pycom08g06390

xyloglucan glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0029341
Physical Location & Seq
Forward (+)
4951386 .. 4952436
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06390.2

Sequence Viewer

Length: 669 bp
ATGAAGGAAGAAATTAGACAGCAGGAGCAAAAGGTTTCCCGGAAGAAGAAGCACAACAGAATATACACAAAGGAGTTGGCATTGGCTTTCCTTCTCCTAACTGCCGCGGCGAGGAGCCTTCTGTCTGCTCAGGGTATCCACTTCTACTTCTTGTTGTTTCAGGGAGTATCGTTCCTGCTGGTCGGTCTAGACCTAATCGGTGAGCAGGTGGAGTTCAAAGGCAATCTTCTTGATGCTTTTATTCTTCTCATCAATTATAAATGGTATATAGTTTCTCTTTTTTTTTCTTTTTTTTTTGTTTTCAAGAGGAAAAAATACTCCTTAGAAGGGGCCTATGTTTATATAATAGTAGTGATTGAGGATGAATTTTATGTCTATATTATACACGACACATTCAAGATTCGATTGTCAGTGATGGTGAATGACATGATGGTGGTTAGGAAGAAGCTGAAATGCTTCTGTAAGTCTTCCCGACTCCCAAATAGGGAGACTGTTGTGGTGAAACCACCACCTAGTTATGCAAGAAAAGATCTCTGTTTATTCTTTGATTCTCATTTTATTATTCAATGCAAGTGCCATAAATATAAGCAGTTGTCAAGAAAAAAAAAGATTCGAATCACTAGTGAATTATCCAATTTAATCCTAAAATACCCGCCTACAAATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

223

Amino Acids

26.28

Weight (kDa)

9.77

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029341)

Species Orthologous Gene IDs
pyrus_communis pycom08g06390 pycom15g06120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccII CGCG 1 cut(s) 107
AciI CCGC 3 cut(s) 105, 107, 653
AcsI RAATTY 1 cut(s) 365
AfiI CCNNNNNNNGG 3 cut(s) 111, 327, 484
AgsI TTSAA 4 cut(s) 217, 304, 397, 566
AhlI ACTAGT 1 cut(s) 620
AluBI AGCT 1 cut(s) 448
AluI AGCT 1 cut(s) 448
Alw26I GTCTC 1 cut(s) 482
AoxI GGCC 1 cut(s) 330
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 3 cut(s) 212, 430, 511
AsuII TTCGAA 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 459
BccI CCATC 2 cut(s) 409, 424
BciVI GTATCC 1 cut(s) 146
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 482
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 3 cut(s) 188, 513, 621
BfuAI ACCTGC 1 cut(s) 196
BfuI GTATCC 1 cut(s) 146
BglII AGATCT 1 cut(s) 529
BisI GCNGC 2 cut(s) 105, 108
BlsI GCNGC 2 cut(s) 106, 109
Bme1390I CCNGG 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 116, 331
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 613
BpuMI CCSGG 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 327, 484
Bse8I GATNNNNATC 1 cut(s) 614
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 367
BseJI GATNNNNATC 1 cut(s) 614
BseLI CCNNNNNNNGG 3 cut(s) 111, 327, 484
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 3 cut(s) 111, 327, 484
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 1 cut(s) 332
Bsp119I TTCGAA 1 cut(s) 613
Bsp143I GATC 1 cut(s) 529
BspACI CCGC 3 cut(s) 105, 107, 653
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 116, 331
BspMI ACCTGC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 613
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 493
BstBI TTCGAA 1 cut(s) 613
BstDEI CTNAG 2 cut(s) 129, 322
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 38
BstUI CGCG 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 330
Cfr42I CCGCGG 1 cut(s) 108
CviAII CATG 1 cut(s) 427
CviJI RGCY 4 cut(s) 86, 117, 332, 448
CviKI_1 RGCY 4 cut(s) 86, 117, 332, 448
DdeI CTNAG 2 cut(s) 129, 322
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 330
FaeI CATG 1 cut(s) 430
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 1 cut(s) 426
FauI CCCGC 1 cut(s) 660
Fnu4HI GCNGC 2 cut(s) 105, 108
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 105, 108
FspBI CTAG 3 cut(s) 188, 513, 621
GluI GCNGC 2 cut(s) 105, 108
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 40
Hin1II CATG 1 cut(s) 430
HinfI GANTC 5 cut(s) 400, 474, 548, 610, 615
HpaII CCGG 1 cut(s) 40
HphI GGTGA 3 cut(s) 212, 430, 511
Hpy188III TCNNGA 6 cut(s) 188, 230, 304, 397, 471, 597
HpyAV CCTTC 3 cut(s) 101, 128, 320
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 2 cut(s) 521, 570
HpyF3I CTNAG 2 cut(s) 129, 322
Hsp92II CATG 1 cut(s) 430
KspI CCGCGG 1 cut(s) 108
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 25, 114
LpnPI CCDG 7 cut(s) 8, 53, 116, 146, 164, 188, 191
LweI GCATC 1 cut(s) 223
MaeI CTAG 3 cut(s) 188, 513, 621
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 7 cut(s) 20, 55, 58, 218, 236, 454, 459
MflI RGATCY 1 cut(s) 529
MluCI AATT 5 cut(s) 12, 253, 365, 626, 634
MlyI GAGTC 1 cut(s) 468
MnlI CCTC 3 cut(s) 105, 300, 352
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 107
NciI CCSGG 1 cut(s) 40
NdeII GATC 1 cut(s) 529
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 2 cut(s) 116, 331
NspV TTCGAA 1 cut(s) 613
PaqCI CACCTGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 4 cut(s) 400, 548, 610, 615
PfoI TCCNGGA 1 cut(s) 38
PkrI GCNGC 2 cut(s) 106, 109
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PsiI TTATAA 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 116, 331
PspPI GGNCC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 431
SacII CCGCGG 1 cut(s) 108
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 2 cut(s) 105, 108
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 1 cut(s) 468
ScrFI CCNGG 1 cut(s) 40
SetI ASST 5 cut(s) 36, 195, 210, 450, 514
SfaNI GCATC 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 613
SgrBI CCGCGG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 5 cut(s) 12, 253, 365, 626, 634
SsiI CCGC 3 cut(s) 105, 107, 653
SspMI CTAG 3 cut(s) 188, 513, 621
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 493
TaqI TCGA 2 cut(s) 403, 613
TaqII GACCGA 1 cut(s) 173
TasI AATT 5 cut(s) 12, 253, 365, 626, 634
TauI GCSGC 2 cut(s) 107, 110
TfiI GAWTC 4 cut(s) 400, 548, 610, 615
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 1 cut(s) 417
TspDTI ATGAA 2 cut(s) 17, 378
TspRI CASTG 1 cut(s) 417
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 455
XspI CTAG 3 cut(s) 188, 513, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.