Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0029342

Physical Location & Seq

Genomic Coordinates Forward (+)

5518474 .. 5519064

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTGGCGGGAAATCGGAGACTGGGAAGCGGGCAAGCTCCGCCCAAATTCGTTCTCGAATCGAAATCGAATCAAGTCGACCCGGATCCAAACGCTCCCACTCTCCAAGCACAACGACATCATCTCCCCTCACCGCGGCTCCGTCAACTCTCTCCAGCTCGATTTGACGGAGGGCCGGTACCTGTTATCCGGCGCCTCCGATGCTTCCGCTGCCGTGTTCGATGTCCAGCGCGGGACCGATTACGTAGGCAGCGGAGTTATCACGAGGCACAAGTGCCTGTTTGTGGTGGACAAGCAGCACGAGCACGGGCATAAGTTCGCGGTGTGGTATCCCGTCGACACCATACTGTTTGTGACGGGGTCGTACGATCATCACATCAATGTTTGGGATACGAATACGACGCAGGTGCTGATGGACTTCAAGATGCCGGGGAAGGTGTACCGAACTGCAATGTCGCCGTTGGCAACTTCTCACATGCTCATTGCTGCCGGAACCGAAGATGTTCAAGTCCGCCTCTGTGATATTACACCTTGTCTGGCCACCGCGGTATGTCCCAATATTCATAGAATTCGACGTTTAATGCACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006283 GO:0006289 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009893 GO:0009987 GO:0010604 GO:0016567 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0045739 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051716 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 map03420 map04120

Pfam Domains

Protein Families

WD40

Protein Analysis

197

Amino Acids

22.11

Weight (kDa)

8.96

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	27 - 175	5.3e-08	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	35 - 177	1.3e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	38 - 175	1.8e-07	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	39 - 174	4.2e-07	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	44 - 176	4.9e-10	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029342)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g06940
rosa_multiflora	Rmu_co8303285.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	2 cut(s)	177, 191
AccI	GTMKAC	2 cut(s)	77, 336
AccII	CGCG	4 cut(s)	135, 231, 320, 545
AclWI	GGATC	2 cut(s)	79, 92
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	2 cut(s)	46, 567
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	179, 365, 440
AfiI	CCNNNNNNNGG	2 cut(s)	134, 283
AgsI	TTSAA	2 cut(s)	421, 506
AluBI	AGCT	2 cut(s)	37, 157
AluI	AGCT	2 cut(s)	37, 157
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	79, 92
AlwNI	CAGNNNCTG	1 cut(s)	409
AoxI	GGCC	2 cut(s)	172, 537
ApeKI	GCWGC	4 cut(s)	209, 249, 295, 485
ApoI	RAATTY	2 cut(s)	46, 567
Asp700I	GAANNNNTTC	1 cut(s)	501
Asp718I	GGTACC	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	194, 231
AspS9I	GGNCC	2 cut(s)	172, 234
AsuC2I	CCSGG	2 cut(s)	82, 429
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	84
BanI	GGYRCC	2 cut(s)	177, 191
BauI	CACGAG	2 cut(s)	262, 299
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	196, 261, 307, 472
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	2 cut(s)	197, 442
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciVI	GTATCC	2 cut(s)	339, 382
BcnI	CCSGG	2 cut(s)	82, 429
BcoDI	GTCTC	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	2 cut(s)	339, 382
BisI	GCNGC	5 cut(s)	136, 210, 250, 296, 486
BlsI	GCNGC	5 cut(s)	137, 211, 251, 297, 487
Bme1390I	CCNGG	2 cut(s)	82, 429
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	172, 234
BmiI	GGNNCC	6 cut(s)	86, 139, 179, 193, 235, 493
BmrFI	CCNGG	2 cut(s)	82, 429
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	190, 414
BmuI	ACTGGG	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	137
BpuMI	CCSGG	2 cut(s)	82, 429
BsaAI	YACGTR	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	133, 428, 543
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 122, 137, 152, 161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 283
Bse118I	RCCGGY	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	2 cut(s)	456, 480
BseDI	CCNNGG	3 cut(s)	133, 428, 543
BseLI	CCNNNNNNNGG	2 cut(s)	134, 283
BseMI	GCAATG	2 cut(s)	456, 480
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	4 cut(s)	196, 261, 307, 472
Bsh1236I	CGCG	4 cut(s)	135, 231, 320, 545
BshFI	GGCC	2 cut(s)	174, 539
BshNI	GGYRCC	2 cut(s)	177, 191
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	5 cut(s)	82, 175, 189, 428, 489
BsiWI	CGTACG	1 cut(s)	363
BslFI	GGGAC	2 cut(s)	247, 537
BslI	CCNNNNNNNGG	2 cut(s)	134, 283
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	247, 537
BsnI	GGCC	2 cut(s)	174, 539
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	84, 367
BspANI	GGCC	2 cut(s)	174, 539
BspFNI	CGCG	4 cut(s)	135, 231, 320, 545
BspLI	GGNNCC	6 cut(s)	86, 139, 179, 193, 235, 493
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	79, 92
BspT107I	GGYRCC	2 cut(s)	177, 191
BsrDI	GCAATG	2 cut(s)	456, 480
BsrFI	RCCGGY	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	133, 428, 543
BssMI	GATC	2 cut(s)	84, 367
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	2 cut(s)	262, 299
Bst2BI	CACGAG	2 cut(s)	262, 299
Bst4CI	ACNGT	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	31, 35
BstDSI	CCRYGG	2 cut(s)	133, 543
BstFNI	CGCG	4 cut(s)	135, 231, 320, 545
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	194, 231
BstKTI	GATC	2 cut(s)	87, 370
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	84, 367
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 200, 209, 301
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	80, 427
BstSNI	TACGTA	1 cut(s)	244
BstUI	CGCG	4 cut(s)	135, 231, 320, 545
BstV1I	GCAGC	4 cut(s)	196, 261, 307, 472
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuI	GTATCC	2 cut(s)	339, 382
BsuRI	GGCC	2 cut(s)	174, 539
BtgI	CCRYGG	2 cut(s)	133, 543
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	31, 35
CaiI	CAGNNNCTG	1 cut(s)	409
CfoI	GCGC	2 cut(s)	194, 231
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	172, 234
Cfr42I	CCGCGG	2 cut(s)	136, 546
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	178, 364, 439
CviAII	CATG	1 cut(s)	475
CviJI	RGCY	5 cut(s)	37, 138, 157, 174, 539
CviKI_1	RGCY	5 cut(s)	37, 138, 157, 174, 539
CviQI	GTAC	3 cut(s)	178, 364, 439
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	2 cut(s)	86, 369
DpnII	GATC	2 cut(s)	84, 367
EaeI	YGGCCR	1 cut(s)	537
EciI	GGCGGA	2 cut(s)	29, 500
Eco105I	TACGTA	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	567
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
FaeI	CATG	1 cut(s)	478
FaiI	YATR	5 cut(s)	312, 344, 476, 550, 564
FaqI	GGGAC	2 cut(s)	247, 537
FatI	CATG	1 cut(s)	474
FauI	CCCGC	2 cut(s)	22, 224
FblI	GTMKAC	2 cut(s)	77, 336
Fnu4HI	GCNGC	5 cut(s)	136, 210, 250, 296, 486
Fsp4HI	GCNGC	5 cut(s)	136, 210, 250, 296, 486
GlaI	GCGC	2 cut(s)	193, 230
GluI	GCNGC	5 cut(s)	136, 210, 250, 296, 486
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	174, 539
HapII	CCGG	5 cut(s)	82, 175, 189, 428, 489
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	194, 231
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	478
Hin6I	GCGC	2 cut(s)	192, 229
HinP1I	GCGC	2 cut(s)	192, 229
HincII	GTYRAC	3 cut(s)	78, 145, 337
HindII	GTYRAC	3 cut(s)	78, 145, 337
HinfI	GANTC	2 cut(s)	58, 69
HpaII	CCGG	5 cut(s)	82, 175, 189, 428, 489
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	5 cut(s)	78, 145, 289, 337, 439
Hpy188I	TCNGA	2 cut(s)	17, 199
Hpy188III	TCNNGA	3 cut(s)	55, 262, 421
Hpy8I	GTNNAC	5 cut(s)	78, 145, 289, 337, 439
Hpy99I	CGWCG	3 cut(s)	338, 403, 576
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	2 cut(s)	243, 574
HpyCH4V	TGCA	2 cut(s)	449, 583
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 200, 209, 301
HpySE526I	ACGT	2 cut(s)	243, 574
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	478
HspAI	GCGC	2 cut(s)	192, 229
KasI	GGCGCC	1 cut(s)	191
KpnI	GGTACC	1 cut(s)	181
KspI	CCGCGG	2 cut(s)	136, 546
Kzo9I	GATC	2 cut(s)	84, 367
LmnI	GCTCC	3 cut(s)	42, 99, 143
Lsp1109I	GCAGC	4 cut(s)	196, 261, 307, 472
LweI	GCATC	2 cut(s)	190, 414
MaeII	ACGT	2 cut(s)	243, 574
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	2 cut(s)	86, 369
MboI	GATC	2 cut(s)	84, 367
MboII	GAAGA	1 cut(s)	509
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	2 cut(s)	46, 567
MluNI	TGGCCA	1 cut(s)	539
Mly113I	GGCGCC	1 cut(s)	192
MnlI	CCTC	5 cut(s)	138, 163, 205, 258, 524
Mox20I	TGGCCA	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	1 cut(s)	578
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	539
MspA1I	CMGCKG	4 cut(s)	135, 209, 252, 545
MspI	CCGG	5 cut(s)	82, 175, 189, 428, 489
MspR9I	CCNGG	2 cut(s)	82, 429
MvnI	CGCG	4 cut(s)	135, 231, 320, 545
MwoI	GCNNNNNNNGC	4 cut(s)	39, 200, 209, 301
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	2 cut(s)	82, 429
NdeII	GATC	2 cut(s)	84, 367
NlaIII	CATG	1 cut(s)	478
NlaIV	GGNNCC	6 cut(s)	86, 139, 179, 193, 235, 493
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	478
PaqCI	CACCTGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	58, 69
Pfl23II	CGTACG	1 cut(s)	363
PflFI	GACNNNGTC	1 cut(s)	358
PkrI	GCNGC	5 cut(s)	137, 211, 251, 297, 487
PluTI	GGCGCC	1 cut(s)	195
Ppu21I	YACGTR	1 cut(s)	244
PspLI	CGTACG	1 cut(s)	363
PspN4I	GGNNCC	6 cut(s)	86, 139, 179, 193, 235, 493
PspPI	GGNCC	2 cut(s)	172, 234
PstNI	CAGNNNCTG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	3 cut(s)	179, 365, 440
RsaNI	GTAC	3 cut(s)	178, 364, 439
RseI	CAYNNNNRTG	1 cut(s)	378
SacII	CCGCGG	2 cut(s)	136, 546
SalI	GTCGAC	2 cut(s)	76, 335
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	5 cut(s)	136, 210, 250, 296, 486
Sau3AI	GATC	2 cut(s)	84, 367
Sau96I	GGNCC	2 cut(s)	172, 234
ScrFI	CCNGG	2 cut(s)	82, 429
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	8 cut(s)	39, 159, 183, 246, 408, 438, 532, 577
SfaNI	GCATC	2 cut(s)	190, 414
SfoI	GGCGCC	1 cut(s)	193
Sfr303I	CCGCGG	2 cut(s)	136, 546
SgrBI	CCGCGG	2 cut(s)	136, 546
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	244
Sse9I	AATT	2 cut(s)	46, 567
SspDI	GGCGCC	1 cut(s)	191
SspI	AATATT	1 cut(s)	559
StyD4I	CCNGG	2 cut(s)	80, 427
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	2 cut(s)	246, 577
TaqI	TCGA	8 cut(s)	56, 61, 67, 77, 159, 219, 336, 571
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	2 cut(s)	46, 567
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	58, 69
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	4 cut(s)	209, 249, 295, 485
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	2 cut(s)	130, 182
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	2 cut(s)	46, 567
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	2 cut(s)	77, 336
XmnI	GAANNNNTTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.