Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303285.1

Orthogroup ID

OG0029342

Physical Location & Seq

Genomic Coordinates Forward (+)

236 .. 900

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 601 bp

atgtggcgggaaatcggcgacagagaagcggggaagctccgcccaagttcgttctcgaatcgggtcaagtcaaatcggatccagacgctccagctctccaatcagaaagaaatcgtctcccctcaccgaggcgccatcaactccctccaggtcgatttgacggaggggcggtacctgttgtccggcgcctccgacgcgtcggccgccgtgtacgacatccagcgcggcacggattacgagggcggcggtgctatttcgaagcacaaggcgatattcgtggtggataagcaacatgagaacgggcacaagtatgcggtgtcgtcggcggtttggtatccggttgacaccggactatttgtgacgggttcttatgatcatcatattaatgtgtgggatacgaacacgactcaggtggtgatgaatttcaaaatgcctgggaaggtttataggactgccatgtcttccttggcaacttctcatatgttgattgctgctgggactgaagatgtgcaggttcggctctgtgatattgcttccggggcatttgctcacactctgtctggtcaccgcggtatgtgcttggtattgcaactcgtttctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006283 GO:0006289 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009893 GO:0009987 GO:0010604 GO:0016567 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0045739 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051716 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 map03420 map04120

Pfam Domains

Protein Families

WD40

Protein Analysis

200

Amino Acids

21.92

Weight (kDa)

8.54

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029342)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g06940
rosa_multiflora	Rmu_co8303285.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	502
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	3 cut(s)	131, 171, 185
AccII	CGCG	3 cut(s)	197, 225, 570
AclWI	GGATC	2 cut(s)	73, 86
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	2 cut(s)	132, 186
AfaI	GTAC	2 cut(s)	173, 212
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	147, 433
AluBI	AGCT	2 cut(s)	37, 94
AluI	AGCT	2 cut(s)	37, 94
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	73, 86
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	421
AseI	ATTAAT	1 cut(s)	384
Asp718I	GGTACC	1 cut(s)	171
AspLEI	GCGC	3 cut(s)	134, 188, 225
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	3 cut(s)	116, 427, 557
AsuII	TTCGAA	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	78
BanI	GGYRCC	3 cut(s)	131, 171, 185
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	149, 435
BciVI	GTATCC	2 cut(s)	345, 388
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	121
BfoI	RGCGCY	2 cut(s)	135, 189
BfuAI	ACCTGC	1 cut(s)	502
BfuI	GTATCC	2 cut(s)	345, 388
BisI	GCNGC	4 cut(s)	204, 226, 244, 492
BlsI	GCNGC	4 cut(s)	205, 227, 245, 493
Bme1390I	CCNGG	3 cut(s)	149, 435, 538
BmiI	GGNNCC	4 cut(s)	80, 133, 173, 187
BmrFI	CCNGG	3 cut(s)	149, 435, 538
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	2 cut(s)	74, 131
Bpu14I	TTCGAA	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	538
BsaHI	GRCGYC	2 cut(s)	132, 186
BsaJI	CCNNGG	5 cut(s)	127, 434, 465, 537, 568
BsaWI	WCCGGW	2 cut(s)	337, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	149, 435
BseDI	CCNNGG	5 cut(s)	127, 434, 465, 537, 568
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	306
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	3 cut(s)	197, 225, 570
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	3 cut(s)	131, 171, 185
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	4 cut(s)	183, 338, 348, 537
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	78, 373
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	3 cut(s)	197, 225, 570
BspLI	GGNNCC	4 cut(s)	80, 133, 173, 187
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	2 cut(s)	73, 86
BspT104I	TTCGAA	1 cut(s)	257
BspT107I	GGYRCC	3 cut(s)	131, 171, 185
BssECI	CCNNGG	5 cut(s)	127, 434, 465, 537, 568
BssMI	GATC	2 cut(s)	78, 373
BssNI	GRCGYC	2 cut(s)	132, 186
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	149, 435
BstACI	GRCGYC	2 cut(s)	132, 186
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	568
BstEII	GGTNACC	1 cut(s)	563
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	3 cut(s)	197, 225, 570
BstH2I	RGCGCY	2 cut(s)	135, 189
BstHHI	GCGC	3 cut(s)	134, 188, 225
BstKTI	GATC	2 cut(s)	81, 376
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	78, 373
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	5 cut(s)	194, 203, 517, 539, 576
BstNI	CCWGG	2 cut(s)	149, 435
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	147, 433, 536
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	3 cut(s)	197, 225, 570
BstV1I	GCAGC	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	201
BsuI	GTATCC	2 cut(s)	345, 388
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	502
CfoI	GCGC	3 cut(s)	134, 188, 225
Cfr42I	CCGCGG	1 cut(s)	571
CseI	GACGC	3 cut(s)	94, 186, 203
Csp6I	GTAC	2 cut(s)	172, 211
CviAII	CATG	2 cut(s)	293, 457
CviJI	RGCY	4 cut(s)	37, 94, 203, 520
CviKI_1	RGCY	4 cut(s)	37, 94, 203, 520
CviQI	GTAC	2 cut(s)	172, 211
DdeI	CTNAG	1 cut(s)	408
DinI	GGCGCC	2 cut(s)	133, 187
DpnI	GATC	2 cut(s)	80, 375
DpnII	GATC	2 cut(s)	78, 373
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	201
EagI	CGGCCG	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	465
Eco52I	CGGCCG	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	563
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	147, 433
EcoT14I	CCWWGG	1 cut(s)	465
EgeI	GGCGCC	2 cut(s)	133, 187
EheI	GGCGCC	2 cut(s)	133, 187
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	2 cut(s)	296, 460
FaiI	YATR	9 cut(s)	294, 312, 372, 381, 447, 458, 480, 482, 575
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	2 cut(s)	292, 456
FauI	CCCGC	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	4 cut(s)	204, 226, 244, 492
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	204, 226, 244, 492
GlaI	GCGC	3 cut(s)	133, 187, 224
GluI	GCNGC	4 cut(s)	204, 226, 244, 492
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	2 cut(s)	74, 131
HaeII	RGCGCY	2 cut(s)	135, 189
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	4 cut(s)	183, 338, 348, 537
HgaI	GACGC	3 cut(s)	94, 186, 203
HhaI	GCGC	3 cut(s)	134, 188, 225
Hin1I	GRCGYC	2 cut(s)	132, 186
Hin1II	CATG	2 cut(s)	296, 460
Hin6I	GCGC	3 cut(s)	132, 186, 223
HinP1I	GCGC	3 cut(s)	132, 186, 223
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	58, 406
HpaII	CCGG	4 cut(s)	183, 338, 348, 537
HphI	GGTGA	3 cut(s)	116, 427, 557
Hpy166II	GTNNAC	2 cut(s)	211, 343
Hpy188I	TCNGA	3 cut(s)	78, 105, 193
Hpy188III	TCNNGA	2 cut(s)	55, 82
Hpy8I	GTNNAC	2 cut(s)	211, 343
Hpy99I	CGWCG	3 cut(s)	197, 202, 325
HpyAV	CCTTC	1 cut(s)	433
HpyCH4V	TGCA	2 cut(s)	511, 589
HpyF10VI	GCNNNNNNNGC	5 cut(s)	194, 203, 517, 539, 576
HpyF3I	CTNAG	1 cut(s)	408
Hsp92I	GRCGYC	2 cut(s)	132, 186
Hsp92II	CATG	2 cut(s)	296, 460
HspAI	GCGC	3 cut(s)	132, 186, 223
KasI	GGCGCC	2 cut(s)	131, 185
KpnI	GGTACC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	373
KspI	CCGCGG	1 cut(s)	571
Kzo9I	GATC	2 cut(s)	78, 373
LmnI	GCTCC	2 cut(s)	42, 93
Lsp1109I	GCAGC	1 cut(s)	478
MaeIII	GTNAC	2 cut(s)	358, 563
MalI	GATC	2 cut(s)	80, 375
MboI	GATC	2 cut(s)	78, 373
MboII	GAAGA	2 cut(s)	453, 515
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	1 cut(s)	421
MluI	ACGCGT	1 cut(s)	195
Mly113I	GGCGCC	2 cut(s)	132, 186
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	122, 132, 155, 157, 199, 232
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	309, 384
MspA1I	CMGCKG	1 cut(s)	570
MspI	CCGG	4 cut(s)	183, 338, 348, 537
MspR9I	CCNGG	3 cut(s)	149, 435, 538
MvaI	CCWGG	2 cut(s)	149, 435
MvnI	CGCG	3 cut(s)	197, 225, 570
MwoI	GCNNNNNNNGC	5 cut(s)	194, 203, 517, 539, 576
NarI	GGCGCC	2 cut(s)	132, 186
NciI	CCSGG	1 cut(s)	538
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	2 cut(s)	78, 373
NlaIII	CATG	2 cut(s)	296, 460
NlaIV	GGNNCC	4 cut(s)	80, 133, 173, 187
NmuCI	GTSAC	2 cut(s)	358, 563
NspV	TTCGAA	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	205, 227, 245, 493
PleI	GAGTC	1 cut(s)	400
PluTI	GGCGCC	2 cut(s)	135, 189
PpsI	GAGTC	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	147, 433
PspEI	GGTNACC	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	2 cut(s)	147, 433
PspN4I	GGNNCC	4 cut(s)	80, 133, 173, 187
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	2 cut(s)	173, 212
RsaNI	GTAC	2 cut(s)	172, 211
RseI	CAYNNNNRTG	2 cut(s)	309, 384
SacII	CCGCGG	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	4 cut(s)	204, 226, 244, 492
Sau3AI	GATC	2 cut(s)	78, 373
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	3 cut(s)	149, 435, 538
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	39, 96, 153, 177, 414, 444, 516
SfoI	GGCGCC	2 cut(s)	133, 187
Sfr303I	CCGCGG	1 cut(s)	571
SfuI	TTCGAA	1 cut(s)	257
SgrBI	CCGCGG	1 cut(s)	571
SmiMI	CAYNNNNRTG	2 cut(s)	309, 384
Sse9I	AATT	1 cut(s)	421
SspDI	GGCGCC	2 cut(s)	131, 185
StyD4I	CCNGG	3 cut(s)	147, 433, 536
StyI	CCWWGG	1 cut(s)	465
TaqI	TCGA	3 cut(s)	56, 153, 257
TasI	AATT	1 cut(s)	421
TauI	GCSGC	3 cut(s)	206, 228, 246
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	358, 563
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	2 cut(s)	358, 563
TspDTI	ATGAA	1 cut(s)	434
TspGWI	ACGGA	2 cut(s)	176, 245
VspI	ATTAAT	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.