pycom08g08250

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0028662
Physical Location & Seq
Forward (+)
6629378 .. 6629820
443 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGTCCGTTATCCTTTGTAATAAGAAGATATTGAAGCCCTCATTTGGTGTCGGGCATGGCAAACCAACAGCTCGAGGTTTTTCCCGACACGTAGCTCAAGCACAAGTGCGCCCTACATGGCTCTCTGGGCTTGACCCACCAGCCTACCTTGACCGAAGGACGGAAAGCTTGAGGTTGTATGTGCAGGCAGAGCTGGTTCATGCTCGCCTTGCAATCCTTGGAGTTGCAGGAATTCTTCTCACAGATGTAAGAGCAACATGGTATTCTGCCTTTTTTTTCTTTTCTTTCTGTGGACTCATTAGAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

104

Amino Acids

11.55

Weight (kDa)

10.43

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 45 - 85 2.7e-06 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0028662)

Species Orthologous Gene IDs
malus_domestica MD08G1101900.v1.1
pyrus_communis pycom08g08250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 231, 305
AfiI CCNNNNNNNGG 2 cut(s) 44, 160
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 4 cut(s) 71, 95, 168, 193
AluI AGCT 4 cut(s) 71, 95, 168, 193
Ama87I CYCGRG 1 cut(s) 72
ApoI RAATTY 2 cut(s) 231, 305
AspLEI GCGC 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 81, 190
BsaAI YACGTR 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 160
BseDI CCNNGG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 44, 160
BsgI GTGCAG 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 44, 160
BsoBI CYCGRG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 186, 205
BstHHI GCGC 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 127, 190, 209
Cac8I GCNNGC 2 cut(s) 186, 205
CfoI GCGC 1 cut(s) 111
CviAII CATG 4 cut(s) 56, 117, 200, 258
CviJI RGCY 8 cut(s) 37, 71, 95, 121, 130, 143, 168, 193
CviKI_1 RGCY 8 cut(s) 37, 71, 95, 121, 130, 143, 168, 193
Eco130I CCWWGG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 4 cut(s) 59, 120, 203, 261
FaiI YATR 5 cut(s) 57, 118, 180, 201, 259
FatI CATG 4 cut(s) 55, 116, 199, 257
GlaI GCGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 111
Hin1II CATG 4 cut(s) 59, 120, 203, 261
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 184, 212, 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 190, 209
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 59, 120, 203, 261
HspAI GCGC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 111, 153, 170, 179, 213
MaeII ACGT 1 cut(s) 90
MboII GAAGA 2 cut(s) 37, 227
MluCI AATT 2 cut(s) 231, 305
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 3 cut(s) 49, 68, 165
MwoI GCNNNNNNNGC 3 cut(s) 127, 190, 209
NlaIII CATG 4 cut(s) 59, 120, 203, 261
PaeR7I CTCGAG 1 cut(s) 72
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 91
PspXI VCTCGAGB 1 cut(s) 72
SchI GAGTC 1 cut(s) 288
SetI ASST 8 cut(s) 73, 79, 93, 97, 150, 170, 176, 195
Sfr274I CTCGAG 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 3 cut(s) 72, 96, 169
SmoI CTYRAG 3 cut(s) 72, 96, 169
Sse9I AATT 2 cut(s) 231, 305
StyI CCWWGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 73
TaqII GACCGA 1 cut(s) 168
TasI AATT 2 cut(s) 231, 305
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 176
XapI RAATTY 2 cut(s) 231, 305
XhoI CTCGAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.