pycom08g08690

phosphatidylglycerol acyl-chain remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0029344
Physical Location & Seq
Forward (+)
7004435 .. 7005773
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08690.3

Sequence Viewer

Length: 891 bp
ATGTTGCTCCGCCTCTGTTACACAACCCGCCGCTACTGCCACCACCTCTTCCCCCACCACCACCGTCATCACAATCCCGCCCGCTTATTTTCCTCTTCCACTTCCAGAAACCCCGACGAGCCCCCCAACAATTTCAAGAATTCTGACCAAGTCCCCCATCCTCCCTCTGTTCTACACCGCCGCTTAAACCCTCTGTATTCTGTCCCTGGCGCTTCCTCTCTCGCTCGCGCCGCCGCTATCGCGCTCTCCGGCACCCTCGCCTCCGCCCTGATCGCCTTGTTCGTCGTCGTTTGGACGGACTGCTACGACAAGTCGTTGAATCCTGTACATAACGGAGTACGACATGCCGTCCTCAAATCCACCAAGTCGTTCAGGAAGCTTCTCCACCACGCTAAACAGACCGGCGTCGGCGCCTCCGTTCTCTGGCACTCTCTCAGCCCCATCTTGTCCTCTGCCAACCACGAGGTCCGCTCCGGCTTCGAGCTCCGGGTCGCTGCATTCCTTGCCGATATTGCCGCCGCCAATGCCAGCCGAAGGGTCGCCCTTGTTGGGGCTGGAGGTGGCGCCGTTGTCGATTGGCTGCTCGAGTCGGTGGCTGTCCCTAGGGATGGGTGTGGGAGCCAGGCCGAGTCGGCTAGAGCTCTCGCCTTCTTGATCTCCGATCCTAATGTGTCCGCCCCCGTGCTTGGCAGGCCCGGCGCCGTTCCCAATCTCTTTAGGTTCATTTTCTCCTGCCAGCCTCATCCGTCTAAGAAGCAATCCAGGAGTTTCTTATGCCAAGTATTTGGAGGGGCTCTCTGCACGTTCTGCTCCATTGTTCCTCTGCCACTTCTACAATATCTACATTTCGCATATAGCTGGTGGGCAGGTCATTGCAAGGCAGGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

32.17

Weight (kDa)

9.92

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029344)

Species Orthologous Gene IDs
pyrus_communis pycom08g08690
rosa_multiflora Rmu_co8144014.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 857, 872
AccB1I GGYRCC 4 cut(s) 251, 410, 563, 698
AccBSI CCGCTC 1 cut(s) 471
AccII CGCG 2 cut(s) 228, 242
AclWI GGATC 1 cut(s) 656
AcsI RAATTY 1 cut(s) 139
AcyI GRCGYC 4 cut(s) 405, 411, 564, 699
AfaI GTAC 2 cut(s) 327, 339
AfiI CCNNNNNNNGG 6 cut(s) 423, 534, 549, 550, 608, 686
AgsI TTSAA 2 cut(s) 136, 319
AhdI GACNNNNNGTC 1 cut(s) 347
AjnI CCWGG 3 cut(s) 205, 621, 761
AluBI AGCT 4 cut(s) 379, 484, 641, 858
AluI AGCT 4 cut(s) 379, 484, 641, 858
Alw21I GWGCWC 2 cut(s) 486, 643
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 2 cut(s) 624, 692
ApeKI GCWGC 2 cut(s) 494, 580
ApoI RAATTY 1 cut(s) 139
AspA2I CCTAGG 1 cut(s) 602
AspLEI GCGC 6 cut(s) 212, 230, 244, 413, 566, 701
AspS9I GGNCC 2 cut(s) 466, 693
AsuC2I CCSGG 2 cut(s) 488, 696
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 466
AvrII CCTAGG 1 cut(s) 602
BanI GGYRCC 4 cut(s) 251, 410, 563, 698
BanII GRGCYC 4 cut(s) 123, 486, 643, 796
BauI CACGAG 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 486, 643
BbvI GCAGC 2 cut(s) 481, 567
BccI CCATC 3 cut(s) 165, 449, 602
BceAI ACGGC 3 cut(s) 332, 551, 686
BciT130I CCWGG 3 cut(s) 207, 623, 763
BcnI CCSGG 2 cut(s) 488, 696
BfaI CTAG 2 cut(s) 603, 636
BfoI RGCGCY 4 cut(s) 213, 414, 567, 702
BfuAI ACCTGC 2 cut(s) 857, 872
BglI GCCNNNNNGGC 1 cut(s) 632
BisI GCNGC 8 cut(s) 31, 181, 231, 234, 495, 516, 519, 581
BlnI CCTAGG 1 cut(s) 602
BlsI GCNGC 8 cut(s) 32, 182, 232, 235, 496, 517, 520, 582
Bme1390I CCNGG 5 cut(s) 207, 488, 623, 696, 763
Bme18I GGWCC 1 cut(s) 466
BmeRI GACNNNNNGTC 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 466, 693
BmiI GGNNCC 5 cut(s) 253, 412, 565, 620, 700
BmrFI CCNGG 5 cut(s) 207, 488, 623, 696, 763
BoxI GACNNNNGTC 1 cut(s) 404
BplI GAGNNNNNCTC 4 cut(s) 455, 487, 780, 812
BpmI CTGGAG 1 cut(s) 576
BpuMI CCSGG 2 cut(s) 488, 696
BsaHI GRCGYC 4 cut(s) 405, 411, 564, 699
BsaJI CCNNGG 2 cut(s) 205, 602
Bsc4I CCNNNNNNNGG 6 cut(s) 423, 534, 549, 550, 608, 686
Bse118I RCCGGY 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 871
BseBI CCWGG 3 cut(s) 207, 623, 763
BseDI CCNNGG 2 cut(s) 205, 602
BseGI GGATG 3 cut(s) 157, 613, 742
BseLI CCNNNNNNNGG 6 cut(s) 423, 534, 549, 550, 608, 686
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 1 cut(s) 448
BseXI GCAGC 2 cut(s) 481, 567
BsgI GTGCAG 1 cut(s) 784
Bsh1236I CGCG 2 cut(s) 228, 242
BshFI GGCC 2 cut(s) 626, 694
BshNI GGYRCC 4 cut(s) 251, 410, 563, 698
BsiHKAI GWGCWC 2 cut(s) 486, 643
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 5 cut(s) 249, 402, 474, 487, 696
BslFI GGGAC 3 cut(s) 137, 188, 584
BslI CCNNNNNNNGG 6 cut(s) 423, 534, 549, 550, 608, 686
BsmFI GGGAC 3 cut(s) 137, 188, 584
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 2 cut(s) 626, 694
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 4 cut(s) 123, 486, 643, 796
Bsp1407I TGTACA 1 cut(s) 325
Bsp143I GATC 3 cut(s) 270, 654, 661
BspANI GGCC 2 cut(s) 626, 694
BspCNI CTCAG 1 cut(s) 447
BspFNI CGCG 2 cut(s) 228, 242
BspLI GGNNCC 5 cut(s) 253, 412, 565, 620, 700
BspMI ACCTGC 2 cut(s) 857, 872
BspPI GGATC 1 cut(s) 656
BspT107I GGYRCC 4 cut(s) 251, 410, 563, 698
BsrBI CCGCTC 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 871
BsrFI RCCGGY 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 205, 602
BssMI GATC 3 cut(s) 270, 654, 661
BssNI GRCGYC 4 cut(s) 405, 411, 564, 699
BssSI CACGAG 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 3 cut(s) 207, 623, 763
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 2 cut(s) 53, 100
BstACI GRCGYC 4 cut(s) 405, 411, 564, 699
BstAPI GCANNNNNTGC 2 cut(s) 503, 807
BstAUI TGTACA 1 cut(s) 325
BstC8I GCNNGC 5 cut(s) 82, 226, 529, 692, 737
BstDEI CTNAG 2 cut(s) 434, 750
BstF5I GGATG 3 cut(s) 157, 613, 742
BstFNI CGCG 2 cut(s) 228, 242
BstH2I RGCGCY 4 cut(s) 213, 414, 567, 702
BstHHI GCGC 6 cut(s) 212, 230, 244, 413, 566, 701
BstKTI GATC 3 cut(s) 273, 657, 664
BstMBI GATC 3 cut(s) 270, 654, 661
BstNI CCWGG 3 cut(s) 207, 623, 763
BstNSI RCATGY 1 cut(s) 347
BstPAI GACNNNNGTC 1 cut(s) 404
BstSCI CCNGG 5 cut(s) 205, 486, 621, 694, 761
BstUI CGCG 2 cut(s) 228, 242
BstV1I GCAGC 2 cut(s) 481, 567
BstXI CCANNNNNNTGG 1 cut(s) 785
BsuRI GGCC 2 cut(s) 626, 694
BtsCI GGATG 3 cut(s) 157, 613, 742
BveI ACCTGC 2 cut(s) 857, 872
Cac8I GCNNGC 5 cut(s) 82, 226, 529, 692, 737
CfoI GCGC 6 cut(s) 212, 230, 244, 413, 566, 701
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 466, 693
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 326, 338
CviAII CATG 1 cut(s) 344
CviQI GTAC 2 cut(s) 326, 338
DdeI CTNAG 2 cut(s) 434, 750
DinI GGCGCC 3 cut(s) 412, 565, 700
DpnI GATC 3 cut(s) 272, 656, 663
DpnII GATC 3 cut(s) 270, 654, 661
DriI GACNNNNNGTC 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 53, 100
Eam1105I GACNNNNNGTC 1 cut(s) 347
EarI CTCTTC 2 cut(s) 53, 100
EciI GGCGGA 2 cut(s) 253, 664
Ecl136II GAGCTC 2 cut(s) 484, 641
Eco130I CCWWGG 1 cut(s) 602
Eco24I GRGCYC 4 cut(s) 123, 486, 643, 796
Eco47I GGWCC 1 cut(s) 466
Eco53kI GAGCTC 2 cut(s) 484, 641
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 2 cut(s) 484, 641
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 3 cut(s) 205, 621, 761
EcoT14I CCWWGG 1 cut(s) 602
EcoT38I GRGCYC 4 cut(s) 123, 486, 643, 796
EgeI GGCGCC 3 cut(s) 412, 565, 700
EheI GGCGCC 3 cut(s) 412, 565, 700
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 1 cut(s) 347
FaiI YATR 5 cut(s) 330, 345, 775, 853, 855
FaqI GGGAC 3 cut(s) 137, 188, 584
FatI CATG 1 cut(s) 343
FauI CCCGC 3 cut(s) 35, 85, 89
Fnu4HI GCNGC 8 cut(s) 31, 181, 231, 234, 495, 516, 519, 581
FokI GGATG 3 cut(s) 144, 620, 729
FriOI GRGCYC 4 cut(s) 123, 486, 643, 796
Fsp4HI GCNGC 8 cut(s) 31, 181, 231, 234, 495, 516, 519, 581
FspBI CTAG 2 cut(s) 603, 636
GlaI GCGC 6 cut(s) 211, 229, 243, 412, 565, 700
GluI GCNGC 8 cut(s) 31, 181, 231, 234, 495, 516, 519, 581
GsuI CTGGAG 1 cut(s) 576
HaeII RGCGCY 4 cut(s) 213, 414, 567, 702
HaeIII GGCC 2 cut(s) 626, 694
HapII CCGG 5 cut(s) 249, 402, 474, 487, 696
HgaI GACGC 1 cut(s) 394
HhaI GCGC 6 cut(s) 212, 230, 244, 413, 566, 701
Hin1I GRCGYC 4 cut(s) 405, 411, 564, 699
Hin1II CATG 1 cut(s) 347
Hin6I GCGC 6 cut(s) 210, 228, 242, 411, 564, 699
HinP1I GCGC 6 cut(s) 210, 228, 242, 411, 564, 699
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 3 cut(s) 319, 587, 629
HpaII CCGG 5 cut(s) 249, 402, 474, 487, 696
Hpy188I TCNGA 3 cut(s) 145, 661, 890
Hpy188III TCNNGA 4 cut(s) 105, 136, 373, 652
Hpy99I CGWCG 4 cut(s) 119, 287, 290, 410
HpyAV CCTTC 2 cut(s) 528, 658
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 803
HpyCH4V TGCA 3 cut(s) 497, 801, 876
HpyF3I CTNAG 2 cut(s) 434, 750
HpySE526I ACGT 1 cut(s) 803
Hsp92I GRCGYC 4 cut(s) 405, 411, 564, 699
Hsp92II CATG 1 cut(s) 347
HspAI GCGC 6 cut(s) 210, 228, 242, 411, 564, 699
KasI GGCGCC 3 cut(s) 410, 563, 698
Kzo9I GATC 3 cut(s) 270, 654, 661
LmnI GCTCC 5 cut(s) 12, 476, 489, 618, 815
Lsp1109I GCAGC 2 cut(s) 481, 567
MaeI CTAG 2 cut(s) 603, 636
MaeII ACGT 1 cut(s) 803
MaeIII GTNAC 1 cut(s) 17
MalI GATC 3 cut(s) 272, 656, 663
MbiI CCGCTC 1 cut(s) 471
MboI GATC 3 cut(s) 270, 654, 661
MboII GAAGA 2 cut(s) 40, 87
MhlI GDGCHC 4 cut(s) 123, 486, 643, 796
MluCI AATT 2 cut(s) 130, 139
Mly113I GGCGCC 3 cut(s) 411, 564, 699
MlyI GAGTC 2 cut(s) 596, 638
MseI TTAA 1 cut(s) 185
MspI CCGG 5 cut(s) 249, 402, 474, 487, 696
MspR9I CCNGG 5 cut(s) 207, 488, 623, 696, 763
Mva1269I GAATGC 1 cut(s) 497
MvaI CCWGG 3 cut(s) 207, 623, 763
MvnI CGCG 2 cut(s) 228, 242
NarI GGCGCC 3 cut(s) 411, 564, 699
NciI CCSGG 2 cut(s) 488, 696
NdeII GATC 3 cut(s) 270, 654, 661
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 5 cut(s) 253, 412, 565, 620, 700
NmeAIII GCCGAG 1 cut(s) 652
NspI RCATGY 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 584
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 414
PctI GAATGC 1 cut(s) 497
PfeI GAWTC 1 cut(s) 319
PflFI GACNNNGTC 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 761
PkrI GCNGC 8 cut(s) 32, 182, 232, 235, 496, 517, 520, 582
PleI GAGTC 2 cut(s) 595, 637
PluTI GGCGCC 3 cut(s) 414, 567, 702
PpsI GAGTC 2 cut(s) 595, 637
PshAI GACNNNNGTC 1 cut(s) 404
Psp124BI GAGCTC 2 cut(s) 486, 643
Psp6I CCWGG 3 cut(s) 205, 621, 761
PspGI CCWGG 3 cut(s) 205, 621, 761
PspN4I GGNNCC 5 cut(s) 253, 412, 565, 620, 700
PspPI GGNCC 2 cut(s) 466, 693
PspXI VCTCGAGB 1 cut(s) 584
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 2 cut(s) 327, 339
RsaNI GTAC 2 cut(s) 326, 338
SacI GAGCTC 2 cut(s) 486, 643
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 8 cut(s) 31, 181, 231, 234, 495, 516, 519, 581
Sau3AI GATC 3 cut(s) 270, 654, 661
Sau96I GGNCC 2 cut(s) 466, 693
SchI GAGTC 2 cut(s) 596, 638
ScrFI CCNGG 5 cut(s) 207, 488, 623, 696, 763
SduI GDGCHC 4 cut(s) 123, 486, 643, 796
SfoI GGCGCC 3 cut(s) 412, 565, 700
Sfr274I CTCGAG 1 cut(s) 584
SinI GGWCC 1 cut(s) 466
SlaI CTCGAG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 2 cut(s) 130, 139
SspDI GGCGCC 3 cut(s) 410, 563, 698
SspMI CTAG 2 cut(s) 603, 636
SstI GAGCTC 2 cut(s) 486, 643
StyD4I CCNGG 5 cut(s) 205, 486, 621, 694, 761
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 806
TaqI TCGA 3 cut(s) 480, 573, 585
TasI AATT 2 cut(s) 130, 139
TatI WGTACW 1 cut(s) 325
TauI GCSGC 6 cut(s) 33, 183, 233, 236, 518, 521
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseI GCWGC 2 cut(s) 494, 580
TspDTI ATGAA 1 cut(s) 712
TspGWI ACGGA 4 cut(s) 311, 348, 406, 735
Tth111I GACNNNGTC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 584
XmaJI CCTAGG 1 cut(s) 602
XspI CTAG 2 cut(s) 603, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.