Rmu_co8144014.1_g000001

phosphatidylglycerol acyl-chain remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8144014.1
OG0029344
Physical Location & Seq
Forward (+)
1 .. 429
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8144014.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
cgccaatccgccgagtcgtgccggaggattatccaccacgccaaacagaccggcgtcaccgcctccgtcctctggcactcgctccggtccgtgttgtcctccgccaaccacgaggtccgttccggcttccagcttagggttgcggcgcttctcgccgatatttccgcggccaatgccagccgcagggccgccattgtgggcgccggaggcggcgccgtcgtcgattggctgctcgagtcggtggcggtccccagggatgggtcccgcactcaggcggagtcggccagagcgcttgctttcttgatcgccgaccctaatgtctccgcagccgtgctcggcaggcctaacgctgttcctaatctcttgaggtttatctattcgtgccagcctaagcaatccaacaaggtgagcctttcgattatctcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.01

Weight (kDa)

11.06

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029344)

Species Orthologous Gene IDs
pyrus_communis pycom08g08690
rosa_multiflora Rmu_co8144014.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 200, 212
AccII CGCG 1 cut(s) 167
AcoI YGGCCR 2 cut(s) 168, 282
AcyI GRCGYC 3 cut(s) 54, 201, 213
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 6 cut(s) 72, 136, 183, 257, 258, 271
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 233
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 4 cut(s) 168, 186, 282, 341
ApeKI GCWGC 2 cut(s) 229, 326
AspLEI GCGC 4 cut(s) 148, 203, 215, 292
AspS9I GGNCC 5 cut(s) 87, 115, 186, 247, 261
AsuHPI GGTGA 2 cut(s) 49, 418
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 4 cut(s) 87, 115, 247, 261
BanI GGYRCC 2 cut(s) 200, 212
BauI CACGAG 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 216, 338
BccI CCATC 1 cut(s) 251
BceAI ACGGC 2 cut(s) 200, 314
BciT130I CCWGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 325
BfoI RGCGCY 4 cut(s) 149, 204, 216, 293
BisI GCNGC 7 cut(s) 144, 168, 181, 189, 211, 230, 327
BlsI GCNGC 7 cut(s) 145, 169, 182, 190, 212, 231, 328
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 4 cut(s) 87, 115, 247, 261
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 5 cut(s) 87, 115, 186, 247, 261
BmiI GGNNCC 5 cut(s) 202, 214, 249, 262, 263
BmrFI CCNGG 1 cut(s) 253
BoxI GACNNNNGTC 1 cut(s) 53
Bpu10I CCTNAGC 2 cut(s) 134, 390
BpuEI CTTGAG 1 cut(s) 385
BsaHI GRCGYC 3 cut(s) 54, 201, 213
BsaJI CCNNGG 3 cut(s) 165, 251, 252
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 136, 183, 257, 258, 271
Bse118I RCCGGY 1 cut(s) 50
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 3 cut(s) 165, 251, 252
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 6 cut(s) 72, 136, 183, 257, 258, 271
BseMII CTCAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 216, 338
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 4 cut(s) 170, 188, 284, 343
BshNI GGYRCC 2 cut(s) 200, 212
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 5 cut(s) 22, 51, 85, 123, 204
BslFI GGGAC 2 cut(s) 233, 247
BslI CCNNNNNNNGG 6 cut(s) 72, 136, 183, 257, 258, 271
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 2 cut(s) 233, 247
BsnI GGCC 4 cut(s) 170, 188, 284, 343
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 1 cut(s) 303
BspANI GGCC 4 cut(s) 170, 188, 284, 343
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 1 cut(s) 167
BspHI TCATGA 1 cut(s) 425
BspLI GGNNCC 5 cut(s) 202, 214, 249, 262, 263
BspT107I GGYRCC 2 cut(s) 200, 212
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 3 cut(s) 165, 251, 252
BssMI GATC 1 cut(s) 303
BssNI GRCGYC 3 cut(s) 54, 201, 213
BssSI CACGAG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 253
BstACI GRCGYC 3 cut(s) 54, 201, 213
BstC8I GCNNGC 4 cut(s) 178, 294, 341, 386
BstDEI CTNAG 3 cut(s) 134, 270, 390
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 167
BstH2I RGCGCY 4 cut(s) 149, 204, 216, 293
BstHHI GCGC 4 cut(s) 148, 203, 215, 292
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 5 cut(s) 152, 173, 207, 281, 340
BstNI CCWGG 1 cut(s) 253
BstPAI GACNNNNGTC 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 216, 338
BsuRI GGCC 4 cut(s) 170, 188, 284, 343
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 4 cut(s) 178, 294, 341, 386
CciI TCATGA 1 cut(s) 425
CfoI GCGC 4 cut(s) 148, 203, 215, 292
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 5 cut(s) 87, 115, 186, 247, 261
Cfr42I CCGCGG 1 cut(s) 168
CpoI CGGWCCG 1 cut(s) 87
CseI GACGC 1 cut(s) 43
CspI CGGWCCG 1 cut(s) 87
CviAII CATG 1 cut(s) 426
DdeI CTNAG 3 cut(s) 134, 270, 390
DinI GGCGCC 2 cut(s) 202, 214
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 2 cut(s) 168, 282
EciI GGCGGA 2 cut(s) 91, 290
Eco147I AGGCCT 1 cut(s) 343
Eco47I GGWCC 4 cut(s) 87, 115, 247, 261
Eco47III AGCGCT 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 251
EgeI GGCGCC 2 cut(s) 202, 214
EheI GGCGCC 2 cut(s) 202, 214
FaeI CATG 1 cut(s) 429
FaiI YATR 1 cut(s) 427
FaqI GGGAC 2 cut(s) 233, 247
FatI CATG 1 cut(s) 425
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 7 cut(s) 144, 168, 181, 189, 211, 230, 327
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 7 cut(s) 144, 168, 181, 189, 211, 230, 327
GlaI GCGC 4 cut(s) 147, 202, 214, 291
GluI GCNGC 7 cut(s) 144, 168, 181, 189, 211, 230, 327
HaeII RGCGCY 4 cut(s) 149, 204, 216, 293
HaeIII GGCC 4 cut(s) 170, 188, 284, 343
HapII CCGG 5 cut(s) 22, 51, 85, 123, 204
HgaI GACGC 1 cut(s) 43
HhaI GCGC 4 cut(s) 148, 203, 215, 292
Hin1I GRCGYC 3 cut(s) 54, 201, 213
Hin1II CATG 1 cut(s) 429
Hin6I GCGC 4 cut(s) 146, 201, 213, 290
HinP1I GCGC 4 cut(s) 146, 201, 213, 290
HinfI GANTC 3 cut(s) 14, 236, 278
HpaII CCGG 5 cut(s) 22, 51, 85, 123, 204
HphI GGTGA 2 cut(s) 49, 418
Hpy188III TCNNGA 3 cut(s) 301, 364, 426
Hpy99I CGWCG 2 cut(s) 221, 224
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 173, 207, 281, 340
HpyF3I CTNAG 3 cut(s) 134, 270, 390
Hsp92I GRCGYC 3 cut(s) 54, 201, 213
Hsp92II CATG 1 cut(s) 429
HspAI GCGC 4 cut(s) 146, 201, 213, 290
KasI GGCGCC 2 cut(s) 200, 212
KflI GGGWCCC 1 cut(s) 261
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 2 cut(s) 216, 338
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 336
Mly113I GGCGCC 2 cut(s) 201, 213
MlyI GAGTC 3 cut(s) 23, 245, 287
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 7 cut(s) 18, 73, 80, 106, 109, 200, 360
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 5 cut(s) 22, 51, 85, 123, 204
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 5 cut(s) 152, 173, 207, 281, 340
NarI GGCGCC 2 cut(s) 201, 213
NdeII GATC 1 cut(s) 303
NlaIII CATG 1 cut(s) 429
NlaIV GGNNCC 5 cut(s) 202, 214, 249, 262, 263
NmeAIII GCCGAG 2 cut(s) 37, 315
NmuCI GTSAC 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 233
PagI TCATGA 1 cut(s) 425
PasI CCCWGGG 1 cut(s) 252
PceI AGGCCT 1 cut(s) 343
PkrI GCNGC 7 cut(s) 145, 169, 182, 190, 212, 231, 328
PleI GAGTC 3 cut(s) 22, 244, 286
PluTI GGCGCC 2 cut(s) 204, 216
PpsI GAGTC 3 cut(s) 22, 244, 286
PpuMI RGGWCCY 1 cut(s) 261
PshAI GACNNNNGTC 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 5 cut(s) 202, 214, 249, 262, 263
PspPI GGNCC 5 cut(s) 87, 115, 186, 247, 261
PspPPI RGGWCCY 1 cut(s) 261
PspXI VCTCGAGB 1 cut(s) 233
Rsr2I CGGWCCG 1 cut(s) 87
RsrII CGGWCCG 1 cut(s) 87
SacII CCGCGG 1 cut(s) 168
SatI GCNGC 7 cut(s) 144, 168, 181, 189, 211, 230, 327
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 5 cut(s) 87, 115, 186, 247, 261
SchI GAGTC 3 cut(s) 23, 245, 287
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 336
SetI ASST 4 cut(s) 117, 135, 371, 408
SfoI GGCGCC 2 cut(s) 202, 214
Sfr274I CTCGAG 1 cut(s) 233
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SinI GGWCC 4 cut(s) 87, 115, 247, 261
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 233, 364
SmoI CTYRAG 2 cut(s) 233, 364
SseBI AGGCCT 1 cut(s) 343
SspDI GGCGCC 2 cut(s) 200, 212
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 251
TaqI TCGA 3 cut(s) 222, 234, 416
TauI GCSGC 5 cut(s) 146, 170, 183, 191, 213
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 229, 326
Tsp45I GTSAC 1 cut(s) 55
TspGWI ACGGA 3 cut(s) 55, 79, 107
VpaK11BI GGWCC 4 cut(s) 87, 115, 247, 261
XhoI CTCGAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.