pycom08g09870

Signal peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0029346
Physical Location & Seq
Reverse (-)
8192307 .. 8193992
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09870.2

Sequence Viewer

Length: 405 bp
ATGGTCAGTGTTGCCAAATCTTTTGATGCGCCTATAAAGCTGTTGTTCCCCACAGCAGATGCTGCACGTCCATTTTCTATGCTTGGACTTGGTGATATTGTTATCCCTGGTATTTTCGTGGCGTTGGCTTTGCGGTTTGATGTATCTAGGGGGAAAAAGGGCCAGTACTTCAAGAGTGCTTTTTTGGGATACACAGTTGGTTTGGTCCTCACAATTGTTGTAATGAACTGGTTTCAGGCAGCACAGCCTGCACTGTTGTATATTGTACCATCTGTTATTGGATTTTTGGCTGCTCACTGCATATGGAATGGCGACGTCAAACCGCTGTTGGCGTTCGATGAGTCGAAGAGCGCGGTGATATCTGAAGAAGAAAGTGATCCCAAAACTATCAAGAAGGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005791 GO:0005798 GO:0006508 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009555 GO:0009846 GO:0009856 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016787 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0030163 GO:0030176 GO:0030660 GO:0030970 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031625 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0033619 GO:0034613 GO:0034976 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042500 GO:0042802 GO:0042803 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0046907 GO:0046983 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0065003 GO:0070001 GO:0070011 GO:0070727 GO:0071458 GO:0071556 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904211
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A22B

Protein Analysis

135

Amino Acids

14.53

Weight (kDa)

7.82

Isoelectric Point (pI)

22.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029346)

Species Orthologous Gene IDs
pyrus_communis pycom08g09870
rosa_multiflora Rmu_co8461401.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 318
AccII CGCG 1 cut(s) 353
AciI CCGC 3 cut(s) 133, 323, 353
AclWI GGATC 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 2 cut(s) 167, 267
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 68
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 3 cut(s) 62, 239, 290
AspLEI GCGC 2 cut(s) 31, 353
AspS9I GGNCC 2 cut(s) 160, 205
AsuHPI GGTGA 2 cut(s) 104, 367
AvaII GGWCC 1 cut(s) 205
BbvI GCAGC 3 cut(s) 49, 251, 277
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 182
BfaI CTAG 1 cut(s) 147
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 3 cut(s) 63, 240, 291
BlsI GCNGC 3 cut(s) 64, 241, 292
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 160, 205
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 16, 49
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 163, 233
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 106
BseNI ACTGG 2 cut(s) 163, 233
BseXI GCAGC 3 cut(s) 49, 251, 277
BsgI GTGCAG 2 cut(s) 48, 234
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 1 cut(s) 162
BsnI GGCC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 3 cut(s) 133, 323, 353
BspANI GGCC 1 cut(s) 162
BspFNI CGCG 1 cut(s) 353
BspPI GGATC 1 cut(s) 371
BspQI GCTCTTC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 163, 233
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 376
BssNI GRCGYC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 196, 255
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 315
BstAPI GCANNNNNTGC 2 cut(s) 62, 248
BstC8I GCNNGC 1 cut(s) 249
BstFNI CGCG 1 cut(s) 353
BstHHI GCGC 2 cut(s) 31, 353
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 3 cut(s) 37, 62, 248
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 49, 251, 277
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 162
BtrI CACGTC 1 cut(s) 68
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 3 cut(s) 13, 251, 295
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 2 cut(s) 31, 353
Cfr13I GGNCC 2 cut(s) 160, 205
Csp6I GTAC 2 cut(s) 166, 266
CviJI RGCY 5 cut(s) 40, 128, 162, 247, 290
CviKI_1 RGCY 5 cut(s) 40, 128, 162, 247, 290
CviQI GTAC 2 cut(s) 166, 266
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 106
EcoRV GATATC 1 cut(s) 360
FaiI YATR 5 cut(s) 35, 80, 261, 302, 304
FauNDI CATATG 1 cut(s) 302
Fnu4HI GCNGC 3 cut(s) 63, 240, 291
Fsp4HI GCNGC 3 cut(s) 63, 240, 291
FspBI CTAG 1 cut(s) 147
GlaI GCGC 2 cut(s) 30, 352
GluI GCNGC 3 cut(s) 63, 240, 291
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 2 cut(s) 31, 353
Hin1I GRCGYC 1 cut(s) 315
Hin6I GCGC 2 cut(s) 29, 351
HinP1I GCGC 2 cut(s) 29, 351
HinfI GANTC 1 cut(s) 341
HphI GGTGA 2 cut(s) 104, 367
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 2 cut(s) 172, 391
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 2 cut(s) 196, 255
HpyCH4IV ACGT 2 cut(s) 67, 315
HpyCH4V TGCA 3 cut(s) 65, 251, 300
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 62, 248
HpySE526I ACGT 2 cut(s) 67, 315
Hsp92I GRCGYC 1 cut(s) 315
HspAI GCGC 2 cut(s) 29, 351
Kzo9I GATC 1 cut(s) 376
LguI GCTCTTC 1 cut(s) 341
LpnPI CCDG 6 cut(s) 93, 120, 176, 214, 221, 261
Lsp1109I GCAGC 3 cut(s) 49, 251, 277
LweI GCATC 2 cut(s) 16, 49
MaeI CTAG 1 cut(s) 147
MaeII ACGT 2 cut(s) 67, 315
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 3 cut(s) 358, 377, 380
MfeI CAATTG 1 cut(s) 213
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 37, 62, 248
NdeI CATATG 1 cut(s) 302
NdeII GATC 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 341
PkrI GCNGC 3 cut(s) 64, 241, 292
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 2 cut(s) 160, 205
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 167, 267
RsaNI GTAC 2 cut(s) 166, 266
SapI GCTCTTC 1 cut(s) 341
SatI GCNGC 3 cut(s) 63, 240, 291
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 2 cut(s) 160, 205
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 108
SetI ASST 4 cut(s) 42, 70, 318, 399
SfaNI GCATC 2 cut(s) 16, 49
SinI GGWCC 1 cut(s) 205
Sse9I AATT 1 cut(s) 213
SsiI CCGC 3 cut(s) 133, 323, 353
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 196, 255
TaiI ACGT 2 cut(s) 70, 318
TaqI TCGA 2 cut(s) 336, 344
TasI AATT 1 cut(s) 213
TatI WGTACW 1 cut(s) 165
TscAI CASTG 3 cut(s) 13, 258, 302
TseI GCWGC 3 cut(s) 62, 239, 290
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 3 cut(s) 13, 258, 302
VpaK11BI GGWCC 1 cut(s) 205
XspI CTAG 1 cut(s) 147
ZraI GACGTC 1 cut(s) 316
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.