Rmu_co8461401.1_g000001

Signal peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8461401.1
OG0029346
Physical Location & Seq
Forward (+)
1 .. 1538
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8461401.1_g000001.1.cds

Sequence Viewer

Length: 459 bp
ggaatagaaatgctttctcttgggtctttcaagacaggagccattcttttggctggactttttgtgtatgatatattctgggttttcttcactccagttatggtcagtgttgcaaaatcttttgatgctcctattaagctgttgttccctacagcagatattcaacgtccattttcgatgcttggacttggtgatattgtaatccctggtatttttgtggcactggctttgagatttgatgtctctagaggaaaaaagggccagtatttcaagagtgcatttttgggatacacagtgggtttggtccttacaattgttgtaatgaactggtttcaggcagcacagcctgcactgttgtatattgtaccagctgttattggatttttggctacccattgcatctggaatggtgatgtcaaaccggtttgttcacacatccttgcaatcccctttttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005791 GO:0005798 GO:0006508 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009555 GO:0009846 GO:0009856 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016787 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0030163 GO:0030176 GO:0030660 GO:0030970 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031625 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0033619 GO:0034613 GO:0034976 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042500 GO:0042802 GO:0042803 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0046907 GO:0046983 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0065003 GO:0070001 GO:0070011 GO:0070727 GO:0071458 GO:0071556 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904211
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A22B

Protein Analysis

152

Amino Acids

16.6

Weight (kDa)

9.01

Isoelectric Point (pI)

23.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029346)

Species Orthologous Gene IDs
pyrus_communis pycom08g09870
rosa_multiflora Rmu_co8461401.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 366
AgeI ACCGGT 1 cut(s) 421
AgsI TTSAA 3 cut(s) 31, 164, 271
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 139, 371
AluI AGCT 2 cut(s) 139, 371
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 338
AsiGI ACCGGT 1 cut(s) 421
AspS9I GGNCC 2 cut(s) 259, 304
AsuHPI GGTGA 2 cut(s) 203, 422
AvaII GGWCC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 150
BfuI GTATCC 1 cut(s) 281
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 259, 304
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 3 cut(s) 115, 168, 408
BpmI CTGGAG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 4 cut(s) 95, 228, 262, 332
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 435
BseMI GCAATG 1 cut(s) 394
BseNI ACTGG 4 cut(s) 95, 228, 262, 332
BseXI GCAGC 1 cut(s) 350
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 421
BsiSI CCGG 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 247
BsnI GGCC 1 cut(s) 261
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 4 cut(s) 95, 228, 262, 332
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 295, 354
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 348
BstF5I GGATG 1 cut(s) 435
BstMAI GTCTC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 49
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 435
BtsIMutI CAGTG 4 cut(s) 112, 221, 300, 350
Cac8I GCNNGC 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 259, 304
Csp6I GTAC 1 cut(s) 365
CspAI ACCGGT 1 cut(s) 421
CviJI RGCY 8 cut(s) 41, 53, 139, 227, 261, 346, 371, 389
CviKI_1 RGCY 8 cut(s) 41, 53, 139, 227, 261, 346, 371, 389
CviQI GTAC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 205
FaiI YATR 4 cut(s) 69, 74, 101, 360
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 246
GluI GCNGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 422
HpaII CCGG 1 cut(s) 422
HphI GGTGA 2 cut(s) 203, 422
Hpy166II GTNNAC 1 cut(s) 431
Hpy188III TCNNGA 4 cut(s) 31, 246, 271, 403
Hpy8I GTNNAC 1 cut(s) 431
HpyCH4III ACNGT 2 cut(s) 295, 354
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 5 cut(s) 113, 278, 350, 399, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 166
LmnI GCTCC 2 cut(s) 38, 133
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 3 cut(s) 115, 168, 408
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 166
MboII GAAGA 1 cut(s) 79
MfeI CAATTG 1 cut(s) 312
MluCI AATT 1 cut(s) 312
MnlI CCTC 1 cut(s) 242
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 347
NlaIV GGNNCC 1 cut(s) 40
PinAI ACCGGT 1 cut(s) 421
PkrI GCNGC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 259, 304
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 339
Sau96I GGNCC 2 cut(s) 259, 304
ScrFI CCNGG 1 cut(s) 207
SetI ASST 3 cut(s) 141, 169, 373
SfaNI GCATC 3 cut(s) 115, 168, 408
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 304
Sse9I AATT 1 cut(s) 312
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 295, 354
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 176
TasI AATT 1 cut(s) 312
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 4 cut(s) 112, 228, 300, 357
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 338
TspRI CASTG 4 cut(s) 112, 228, 300, 357
VpaK11BI GGWCC 1 cut(s) 304
XbaI TCTAGA 1 cut(s) 245
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.