pycom08g12120
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0029350
Physical Location & Seq
Reverse (-)
10409477 .. 10409785
309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g12120.1

Sequence Viewer

Length: 309 bp
ATGAAGTTACCTAAAATTCAGTTAAGTAAGGGTTTGGCAAATTGTCATTATCTCAAGATTCTAGACTTGTGCACAAATAGGTTTCATGGAGAAATGTTGACCACTTTCTGCAAAATGACCAACCTTAGAAAGCTTTACCTCTGTGAGAATTATGTGTTTGGTGAAATGTCTGAGGAGATAGGGAATTTAGCTTCACTTGAAGAGCTTTTCATTTACAGTAATAATCTTACCGGTGTCATTCCCACGTCGATTAGTAAGTTGATTTGTGTTGATTTGACTGTGAAGTTTGAAAGAAATGTCGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

103

Amino Acids

11.71

Weight (kDa)

7.61

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 6 - 87 2.9e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029350)

Species Orthologous Gene IDs
pyrus_communis pycom08g12120 pycom08g14430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 15, 184
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 2 cut(s) 200, 290
AjiI CACGTC 1 cut(s) 246
AjuI GAANNNNNNNTTGG 1 cut(s) 286
AluBI AGCT 3 cut(s) 133, 191, 205
AluI AGCT 3 cut(s) 133, 191, 205
Alw21I GWGCWC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 70
ApaLI GTGCAC 1 cut(s) 70
ApoI RAATTY 2 cut(s) 15, 184
AsiGI ACCGGT 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BfaI CTAG 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 230
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 218, 280
Bst6I CTCTTC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 125, 171
BstSLI GKGCMC 1 cut(s) 74
BtrI CACGTC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 230
CspAI ACCGGT 1 cut(s) 230
CviAII CATG 1 cut(s) 86
CviJI RGCY 3 cut(s) 133, 191, 205
CviKI_1 RGCY 3 cut(s) 133, 191, 205
DdeI CTNAG 2 cut(s) 125, 171
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
FaeI CATG 1 cut(s) 89
FaiI YATR 2 cut(s) 87, 153
FatI CATG 1 cut(s) 85
FspBI CTAG 1 cut(s) 62
HapII CCGG 1 cut(s) 231
Hin1II CATG 1 cut(s) 89
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 72, 99
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 55, 62
Hpy8I GTNNAC 2 cut(s) 72, 99
Hpy99I CGWCG 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 218, 280
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 72, 111
HpyF3I CTNAG 2 cut(s) 125, 171
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 89
LguI GCTCTTC 1 cut(s) 195
LpnPI CCDG 1 cut(s) 244
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 6
MboII GAAGA 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 4 cut(s) 15, 40, 148, 184
MnlI CCTC 2 cut(s) 149, 166
MseI TTAA 1 cut(s) 23
MspI CCGG 1 cut(s) 231
NlaIII CATG 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 58
PinAI ACCGGT 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 23
SduI GDGCHC 1 cut(s) 74
SetI ASST 8 cut(s) 13, 83, 126, 135, 141, 193, 207, 248
SgeI CNNG 7 cut(s) 67, 74, 79, 98, 209, 243, 256
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 4 cut(s) 15, 40, 148, 184
SspMI CTAG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 218, 280
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 248
TasI AATT 4 cut(s) 15, 40, 148, 184
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 17, 74, 199
VneI GTGCAC 1 cut(s) 70
XapI RAATTY 2 cut(s) 15, 184
XbaI TCTAGA 1 cut(s) 61
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.