Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0024660

Physical Location & Seq

Genomic Coordinates Forward (+)

16949410 .. 16950922

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCATGTGGCTGGGGATCTAGGGTTTCGGAGCCTCGTGCTGGTGGCTTGTTTTCTGGCGCCGGTGATCGGATTCTTCGTGGTTCGGAGAAAATGGCGCCTCGCTAACGCCAGGAGGGAGGATCGATCAGGAGACTTTTGGTCTTGGCCAAGGAGGAAGCTGCTAGAGCTGAGTTCGAGGTCACGGCTGGGTACGGCGCCGCTTCGGTGGCTGAGATTAAGGGTCCTTATTGCGTTGTTTGTTACTGCCCCACCACCACGCGCTGCGCCCGCTGCAAAGCGGTTCGCTACTGTTCTGGGAAGTGTCAAATTGTTCACTGGCGACAAGGTCACAAGGAAGAGTGCCGTCCTTCTACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

120

Amino Acids

13.39

Weight (kDa)

12.0

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024660)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g16840 pycom15g34360
rosa_multiflora	Rmu_sc0008452.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	58, 96, 196
AccII	CGCG	1 cut(s)	261
AciI	CCGC	3 cut(s)	200, 270, 280
AclWI	GGATC	2 cut(s)	24, 129
AcoI	YGGCCR	1 cut(s)	146
AcyI	GRCGYC	3 cut(s)	59, 97, 197
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	40, 68
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	160, 169
AluI	AGCT	2 cut(s)	160, 169
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	24, 129
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	160, 263, 272
AspLEI	GCGC	5 cut(s)	61, 99, 199, 263, 268
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	148
BanI	GGYRCC	3 cut(s)	58, 96, 196
BauI	CACGAG	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	147, 250, 259
BceAI	ACGGC	3 cut(s)	200, 210, 329
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	20, 164
BfoI	RGCGCY	3 cut(s)	62, 100, 200
BisI	GCNGC	4 cut(s)	161, 200, 264, 273
BlsI	GCNGC	4 cut(s)	162, 201, 265, 274
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	223
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	5 cut(s)	32, 60, 98, 198, 224
BmrFI	CCNGG	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	124
BsaHI	GRCGYC	3 cut(s)	59, 97, 197
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 68
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	40, 68
BseMII	CTCAG	2 cut(s)	161, 203
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	3 cut(s)	147, 250, 259
BseYI	CCCAGC	2 cut(s)	11, 187
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	3 cut(s)	58, 96, 196
BshVI	ATCGAT	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	40, 68
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	16, 66, 121, 125
BspACI	CCGC	3 cut(s)	200, 270, 280
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	162, 204
BspDI	ATCGAT	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	5 cut(s)	32, 60, 98, 198, 224
BspPI	GGATC	2 cut(s)	24, 129
BspT107I	GGYRCC	3 cut(s)	58, 96, 196
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	4 cut(s)	16, 66, 121, 125
BssNI	GRCGYC	3 cut(s)	59, 97, 197
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	3 cut(s)	59, 97, 197
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	170, 212
BstFNI	CGCG	1 cut(s)	261
BstH2I	RGCGCY	3 cut(s)	62, 100, 200
BstHHI	GCGC	5 cut(s)	61, 99, 199, 263, 268
BstKTI	GATC	4 cut(s)	19, 69, 124, 128
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	4 cut(s)	16, 66, 121, 125
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 208, 269, 272
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	147, 250, 259
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	5 cut(s)	61, 99, 199, 263, 268
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	8 cut(s)	11, 33, 47, 148, 160, 169, 187, 211
CviKI_1	RGCY	8 cut(s)	11, 33, 47, 148, 160, 169, 187, 211
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	170, 212
DinI	GGCGCC	3 cut(s)	60, 98, 198
DpnI	GATC	4 cut(s)	18, 68, 123, 127
DpnII	GATC	4 cut(s)	16, 66, 121, 125
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	332
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	3 cut(s)	60, 98, 198
EheI	GGCGCC	3 cut(s)	60, 98, 198
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	8
FaiI	YATR	2 cut(s)	6, 358
FatI	CATG	1 cut(s)	4
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	161, 200, 264, 273
Fsp4HI	GCNGC	4 cut(s)	161, 200, 264, 273
FspBI	CTAG	2 cut(s)	20, 164
GlaI	GCGC	5 cut(s)	60, 98, 198, 262, 267
GluI	GCNGC	4 cut(s)	161, 200, 264, 273
GsaI	CCCAGC	2 cut(s)	15, 191
HaeII	RGCGCY	3 cut(s)	62, 100, 200
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	5 cut(s)	61, 99, 199, 263, 268
Hin1I	GRCGYC	3 cut(s)	59, 97, 197
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	5 cut(s)	59, 97, 197, 261, 266
HinP1I	GCGC	5 cut(s)	59, 97, 197, 261, 266
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	3 cut(s)	30, 71, 87
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	4, 275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 208, 269, 272
HpyF3I	CTNAG	2 cut(s)	170, 212
Hsp92I	GRCGYC	3 cut(s)	59, 97, 197
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	5 cut(s)	59, 97, 197, 261, 266
KasI	GGCGCC	3 cut(s)	58, 96, 196
Kzo9I	GATC	4 cut(s)	16, 66, 121, 125
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	9 cut(s)	26, 41, 75, 97, 114, 124, 173, 281, 303
Lsp1109I	GCAGC	3 cut(s)	147, 250, 259
MaeI	CTAG	2 cut(s)	20, 164
MaeIII	GTNAC	3 cut(s)	180, 241, 328
MalI	GATC	4 cut(s)	18, 68, 123, 127
MboI	GATC	4 cut(s)	16, 66, 121, 125
MboII	GAAGA	2 cut(s)	67, 349
MflI	RGATCY	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	148
MluCI	AATT	1 cut(s)	308
MluNI	TGGCCA	1 cut(s)	148
Mly113I	GGCGCC	3 cut(s)	59, 97, 197
MnlI	CCTC	6 cut(s)	44, 108, 110, 112, 147, 171
Mox20I	TGGCCA	1 cut(s)	148
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	148
MseI	TTAA	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	148
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	112
MteI	GCGCNGCGC	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	166, 208, 269, 272
NarI	GGCGCC	3 cut(s)	59, 97, 197
NdeII	GATC	4 cut(s)	16, 66, 121, 125
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	5 cut(s)	32, 60, 98, 198, 224
NmuCI	GTSAC	2 cut(s)	180, 328
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	72
PflFI	GACNNNGTC	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	162, 201, 265, 274
PluTI	GGCGCC	3 cut(s)	62, 100, 200
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	2 cut(s)	11, 187
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	5 cut(s)	32, 60, 98, 198, 224
PspPI	GGNCC	1 cut(s)	223
PspPPI	RGGWCCY	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	326
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	4 cut(s)	161, 200, 264, 273
Sau3AI	GATC	4 cut(s)	16, 66, 121, 125
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	112
SetI	ASST	4 cut(s)	162, 171, 182, 330
SfoI	GGCGCC	3 cut(s)	60, 98, 198
SgrAI	CRCCGGYG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	223
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	3 cut(s)	200, 270, 280
SspDI	GGCGCC	3 cut(s)	58, 96, 196
SspMI	CTAG	2 cut(s)	20, 164
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	124, 176
TasI	AATT	1 cut(s)	308
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	2 cut(s)	180, 328
TseI	GCWGC	3 cut(s)	160, 263, 272
Tsp45I	GTSAC	2 cut(s)	180, 328
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	2 cut(s)	20, 164
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.