Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008452.1

Orthogroup ID

OG0024660

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 389

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008452.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 290 bp

atgcatgtatcggtggatctagggtttcggagcctggtagtggtggcctgcatcctgctgccggtgatcggattcttcgtcgctcgccacaaatggcgcgtcgccgcggccagaagtcaggagatcaagaggctgttggtgttggcatcacaggaagctgctagagccgagtttgaggtcactactggttacgacgtcgtttttgctcctgagaagagggattcatattgcgccgtctgctactgccccaccaccacccgctgtgcccgctgcaaggccgtccggtactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

96

Amino Acids

10.79

Weight (kDa)

9.24

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024660)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g16840 pycom15g34360
rosa_multiflora	Rmu_sc0008452.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	198
AccII	CGCG	2 cut(s)	99, 107
AciI	CCGC	4 cut(s)	105, 107, 259, 268
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	4 cut(s)	40, 61, 68, 274
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	3 cut(s)	45, 108, 276
ApeKI	GCWGC	3 cut(s)	58, 158, 270
ArsI	GACNNNNNNTTYG	4 cut(s)	84, 116, 185, 217
AspLEI	GCGC	2 cut(s)	99, 233
AsuHPI	GGTGA	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	45, 145, 257
BceAI	ACGGC	2 cut(s)	218, 263
BciT130I	CCWGG	1 cut(s)	35
BfaI	CTAG	2 cut(s)	20, 162
BisI	GCNGC	5 cut(s)	59, 105, 108, 159, 271
BlsI	GCNGC	5 cut(s)	60, 106, 109, 160, 272
Bme1390I	CCNGG	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	60, 155
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 61, 68, 274
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	4 cut(s)	40, 61, 68, 274
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	3 cut(s)	45, 145, 257
Bsh1236I	CGCG	2 cut(s)	99, 107
BshFI	GGCC	3 cut(s)	47, 110, 278
BsiSI	CCGG	2 cut(s)	62, 283
BslI	CCNNNNNNNGG	4 cut(s)	40, 61, 68, 274
BsnI	GGCC	3 cut(s)	47, 110, 278
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	3 cut(s)	16, 66, 123
BspACI	CCGC	4 cut(s)	105, 107, 259, 268
BspANI	GGCC	3 cut(s)	47, 110, 278
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	99, 107
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	3 cut(s)	16, 66, 123
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	49, 85, 268
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	2 cut(s)	99, 107
BstHHI	GCGC	2 cut(s)	99, 233
BstKTI	GATC	3 cut(s)	19, 69, 126
BstMBI	GATC	3 cut(s)	16, 66, 123
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 237, 267
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	2 cut(s)	99, 107
BstV1I	GCAGC	3 cut(s)	45, 145, 257
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	47, 110, 278
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	49, 85, 268
CfoI	GCGC	2 cut(s)	99, 233
Cfr10I	RCCGGY	1 cut(s)	61
Cfr42I	CCGCGG	1 cut(s)	108
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	7 cut(s)	33, 47, 110, 133, 158, 167, 278
CviKI_1	RGCY	7 cut(s)	33, 47, 110, 133, 158, 167, 278
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	3 cut(s)	18, 68, 125
DpnII	GATC	3 cut(s)	16, 66, 123
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	8
FaiI	YATR	2 cut(s)	6, 226
FatI	CATG	1 cut(s)	4
FauI	CCCGC	2 cut(s)	266, 275
Fnu4HI	GCNGC	5 cut(s)	59, 105, 108, 159, 271
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	59, 105, 108, 159, 271
FspBI	CTAG	2 cut(s)	20, 162
GlaI	GCGC	2 cut(s)	98, 232
GluI	GCNGC	5 cut(s)	59, 105, 108, 159, 271
HaeIII	GGCC	3 cut(s)	47, 110, 278
HapII	CCGG	2 cut(s)	62, 283
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	2 cut(s)	99, 233
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	2 cut(s)	97, 231
HinP1I	GCGC	2 cut(s)	97, 231
HinfI	GANTC	2 cut(s)	72, 221
HpaII	CCGG	2 cut(s)	62, 283
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	30, 71
Hpy188III	TCNNGA	3 cut(s)	119, 127, 209
Hpy99I	CGWCG	4 cut(s)	83, 104, 197, 200
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	4, 51, 273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 237, 267
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	2 cut(s)	97, 231
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	16, 66, 123
LmnI	GCTCC	2 cut(s)	30, 211
Lsp1109I	GCAGC	3 cut(s)	45, 145, 257
LweI	GCATC	2 cut(s)	60, 155
MaeI	CTAG	2 cut(s)	20, 162
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	178, 188
MalI	GATC	3 cut(s)	18, 68, 125
MboI	GATC	3 cut(s)	16, 66, 123
MboII	GAAGA	2 cut(s)	67, 226
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	123, 169, 210
Mph1103I	ATGCAT	1 cut(s)	6
MspA1I	CMGCKG	3 cut(s)	107, 261, 270
MspI	CCGG	2 cut(s)	62, 283
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MvnI	CGCG	2 cut(s)	99, 107
MwoI	GCNNNNNNNGC	3 cut(s)	164, 237, 267
NdeII	GATC	3 cut(s)	16, 66, 123
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	72, 221
PkrI	GCNGC	5 cut(s)	60, 106, 109, 160, 272
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacII	CCGCGG	1 cut(s)	108
SatI	GCNGC	5 cut(s)	59, 105, 108, 159, 271
Sau3AI	GATC	3 cut(s)	16, 66, 123
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	3 cut(s)	160, 180, 198
SfaNI	GCATC	2 cut(s)	60, 155
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SsiI	CCGC	4 cut(s)	105, 107, 259, 268
SspMI	CTAG	2 cut(s)	20, 162
StyD4I	CCNGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	198
TauI	GCSGC	2 cut(s)	107, 110
TfiI	GAWTC	2 cut(s)	72, 221
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	58, 158, 270
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	213
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	2 cut(s)	20, 162
ZraI	GACGTC	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.