pycom09g00990

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0024662
Physical Location & Seq
Forward (+)
756357 .. 756938
582 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00990.1

Sequence Viewer

Length: 582 bp
ATGACAAGAAGCTGCAATTTGCAGCTTCCAAAAGCAGCTTATTTTCACCCACACACGGGTGAACAGTCCGATCTCGAGCGTGAAATCCTTGATTGGATTCGGACACTCGACCCCGCCGTGCTCAATAGGATTAGGAATCGCGACCCTGCCCTCCTCCATGAGATTCAGCAATTCGACCCCTCCGTTGAGATTCGCAACTTTGATCCTTCCATCGTTGATGAGATTCGGAACTTGGACCCTGCTTTCCCTGCGGAATTTTCTGAAAGCGTAGACGTTCCTCAAAATCCCCCGTCTGTTCCGTCTCCTGAGCCGTCCGTTGTTGAAATCCTTGATTGGATTGGGACACTCGGCCCCGCCGTGCTCGATGAGATTCAGCAATTCGACCCCGCCTTCCTCGATGAGGATCGGAGCTTCGATCCTTCCATTGTTGATGGGATTCGGAAATTGAGTTTGAAGGAAAAGGAGGAAAAAGAAGAAGAGAAGGAGAGAGAGACTGAAAAAGAAAAGGAAAATGAGAAGGAGAGAGAGAGAGAGCGAAAAGAGCGAAAGCAGCAGCGGCAGCGGCAGCAGAGGAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

194

Amino Acids

22.72

Weight (kDa)

4.78

Isoelectric Point (pI)

66.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024662)

Species Orthologous Gene IDs
pyrus_communis pycom09g00990 pycom14g13770 pycom14g13780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 141
AciI CCGC 6 cut(s) 114, 251, 354, 387, 556, 562
AclWI GGATC 3 cut(s) 197, 410, 411
AcsI RAATTY 1 cut(s) 254
AfiI CCNNNNNNNGG 3 cut(s) 55, 56, 400
AgsI TTSAA 2 cut(s) 323, 454
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 4 cut(s) 12, 25, 38, 411
AluI AGCT 4 cut(s) 12, 25, 38, 411
Alw21I GWGCWC 2 cut(s) 123, 363
Alw26I GTCTC 2 cut(s) 306, 485
AlwI GGATC 3 cut(s) 197, 410, 411
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 7 cut(s) 12, 22, 35, 550, 553, 559, 565
ApoI RAATTY 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 235, 350
AsuHPI GGTGA 2 cut(s) 38, 71
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 235
Bbv12I GWGCWC 2 cut(s) 123, 363
BbvI GCAGC 6 cut(s) 34, 47, 562, 565, 571, 577
BccI CCATC 2 cut(s) 218, 425
BceAI ACGGC 3 cut(s) 101, 295, 341
BcoDI GTCTC 2 cut(s) 306, 485
BisI GCNGC 9 cut(s) 13, 23, 36, 551, 554, 557, 560, 563, 566
BlsI GCNGC 9 cut(s) 14, 24, 37, 552, 555, 558, 561, 564, 567
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 235, 350
BmiI GGNNCC 2 cut(s) 237, 352
Bpu10I CCTNAGC 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 402
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 56, 400
Bse8I GATNNNNATC 1 cut(s) 402
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 3 cut(s) 55, 56, 400
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 6 cut(s) 34, 47, 562, 565, 571, 577
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 351
BsiHKAI GWGCWC 2 cut(s) 123, 363
BsiHKCI CYCGRG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 3 cut(s) 55, 56, 400
BsmAI GTCTC 2 cut(s) 306, 485
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 1 cut(s) 351
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 123, 363
Bsp143I GATC 4 cut(s) 70, 202, 403, 415
Bsp68I TCGCGA 1 cut(s) 141
BspACI CCGC 6 cut(s) 114, 251, 354, 387, 556, 562
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 237, 352
BspPI GGATC 3 cut(s) 197, 410, 411
BssMI GATC 4 cut(s) 70, 202, 403, 415
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 4 cut(s) 73, 205, 406, 418
BstMAI GTCTC 2 cut(s) 306, 485
BstMBI GATC 4 cut(s) 70, 202, 403, 415
BstMWI GCNNNNNNNGC 7 cut(s) 248, 541, 550, 556, 559, 562, 565
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 6 cut(s) 34, 47, 562, 565, 571, 577
BsuRI GGCC 1 cut(s) 351
BtuMI TCGCGA 1 cut(s) 141
Cfr13I GGNCC 2 cut(s) 235, 350
CviAII CATG 1 cut(s) 158
CviJI RGCY 6 cut(s) 12, 25, 38, 310, 351, 411
CviKI_1 RGCY 6 cut(s) 12, 25, 38, 310, 351, 411
DdeI CTNAG 1 cut(s) 306
DpnI GATC 4 cut(s) 72, 204, 405, 417
DpnII GATC 4 cut(s) 70, 202, 403, 415
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 74
EcoNI CCTNNNNNAGG 1 cut(s) 398
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 1 cut(s) 161
FaiI YATR 1 cut(s) 159
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 157
FauI CCCGC 3 cut(s) 121, 361, 394
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 9 cut(s) 13, 23, 36, 551, 554, 557, 560, 563, 566
Fsp4HI GCNGC 9 cut(s) 13, 23, 36, 551, 554, 557, 560, 563, 566
GluI GCNGC 9 cut(s) 13, 23, 36, 551, 554, 557, 560, 563, 566
HaeIII GGCC 1 cut(s) 351
Hin1II CATG 1 cut(s) 161
HinfI GANTC 7 cut(s) 97, 136, 163, 190, 223, 370, 436
HphI GGTGA 2 cut(s) 38, 71
Hpy166II GTNNAC 2 cut(s) 62, 271
Hpy188I TCNGA 6 cut(s) 70, 102, 228, 262, 408, 441
Hpy188III TCNNGA 3 cut(s) 74, 140, 305
Hpy8I GTNNAC 2 cut(s) 62, 271
HpyAV CCTTC 6 cut(s) 216, 400, 429, 448, 475, 511
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 15, 22
HpyF10VI GCNNNNNNNGC 7 cut(s) 248, 541, 550, 556, 559, 562, 565
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 1 cut(s) 161
Kzo9I GATC 4 cut(s) 70, 202, 403, 415
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 4 cut(s) 159, 252, 261, 318
Lsp1109I GCAGC 6 cut(s) 34, 47, 562, 565, 571, 577
MaeII ACGT 1 cut(s) 273
MalI GATC 4 cut(s) 72, 204, 405, 417
MboI GATC 4 cut(s) 70, 202, 403, 415
MboII GAAGA 2 cut(s) 485, 488
MhlI GDGCHC 2 cut(s) 123, 363
MluCI AATT 5 cut(s) 16, 170, 254, 377, 443
MnlI CCTC 9 cut(s) 161, 164, 190, 288, 394, 404, 457, 564, 567
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 2 cut(s) 556, 562
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 7 cut(s) 248, 541, 550, 556, 559, 562, 565
NdeII GATC 4 cut(s) 70, 202, 403, 415
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 237, 352
NmeAIII GCCGAG 1 cut(s) 327
NruI TCGCGA 1 cut(s) 141
OliI CACNNNNGTG 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 74
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 180, 354
PfeI GAWTC 7 cut(s) 97, 136, 163, 190, 223, 370, 436
PkrI GCNGC 9 cut(s) 14, 24, 37, 552, 555, 558, 561, 564, 567
PspN4I GGNNCC 2 cut(s) 237, 352
PspPI GGNCC 2 cut(s) 235, 350
RruI TCGCGA 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 9 cut(s) 13, 23, 36, 551, 554, 557, 560, 563, 566
Sau3AI GATC 4 cut(s) 70, 202, 403, 415
Sau96I GGNCC 2 cut(s) 235, 350
SduI GDGCHC 2 cut(s) 123, 363
SetI ASST 5 cut(s) 14, 27, 40, 276, 413
Sfr274I CTCGAG 1 cut(s) 74
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 5 cut(s) 16, 170, 254, 377, 443
SsiI CCGC 6 cut(s) 114, 251, 354, 387, 556, 562
TaaI ACNGT 1 cut(s) 66
TaiI ACGT 1 cut(s) 276
TaqI TCGA 7 cut(s) 75, 108, 174, 363, 381, 396, 414
TasI AATT 5 cut(s) 16, 170, 254, 377, 443
TauI GCSGC 2 cut(s) 559, 565
TfiI GAWTC 7 cut(s) 97, 136, 163, 190, 223, 370, 436
TseI GCWGC 7 cut(s) 12, 22, 35, 550, 553, 559, 565
TspGWI ACGGA 3 cut(s) 172, 288, 304
VpaK11BI GGWCC 1 cut(s) 235
XagI CCTNNNNNAGG 1 cut(s) 398
XapI RAATTY 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.