pycom14g13780

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0024662
Physical Location & Seq
Reverse (-)
16623009 .. 16625122
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13780.3

Sequence Viewer

Length: 1038 bp
ATGTTTTTTTCAGCGGCGGGTATTGTCCTACCGGTGTCATTGTCAGTGCTGGTCGTAATTTATAAGTACTTCAGATTCAGAGGCGTCGAAGTTCCCCTAAATCCGACGTCTGTTCCGTCACCTGCGCCGTCCGATCTCGTTGATTGGATTCGGACGCTCGACCCCGCCGTGCTCAATAGGATTAGGAATCGCGACCCTGCCCTCCTTCAAGAGATTCAGCAATTCGACCCCACCGTTGAGATTCGGAACTTGGGCCCTGCTTTCCCTTCGGAATTTTCTGAAAGCGTAGACGTTCCTCAAAATCCCCCTTCTGTTCCGTCTCCTGAGCCGTCCGTTGTTGAAATCCTTGATTGGATTCGGACACTCGGCCCCGCCGTGCTCGATGAGATTCAGCAATTCGACCCCGCCTTCCTCGATGAGGATCGGAGCTTCGATCCTTCCATCGTTGATGGGATTCGGAAATTGAGTTTGAAGGAAAAGGAGGAAAAAGAAGAAGAGGAGAAGGAGAGAGAGACTGAAAAGGAAAAGGAAAATGAGAAGGAGAGAGAGAGCGAAAGCAGCAGCAGCGGCAGCGGAGGAGGGAATGAGAATGGCGGTGAGGTGGAGAAGAAGGTTGTTGAGGAGACTAGCAGAAGGAATCAGTACCCATTGAGGCCGGAAGCTGGAGACTGTTCGTACCATCCGAAGACTGGCAATTGTAAGTTCGGATGGAATTGCAAGTTGAATCACCCTCGGAGAAGGAAAAACAAGCAGGTGTCTAAGGACAAGGCAAAGCAGAGAGAAGAATTGGGAAAGAAGGAAGACCAGACCGAAAGCAAGTATTACATCAGCCCAGGACGACGTATAGGGGCACCTTCTGTAGCTCCAGCTCTGGAACTTAACTTTTCGGACTTGCCAATTCGTCTGGTGTCTAAGGACAAGGCAAAGCAGAGGGAAGAGTTGGAAGAGAAGCAAGACCAGACGGAAAGCAAGGTTATTATCTATCCGAAGTTCTGGTTTTTACTGGAATGGCTTGGTTTTCATGTTTTACATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-CCCH_2

Protein Analysis

346

Amino Acids

39.4

Weight (kDa)

5.32

Isoelectric Point (pI)

63.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024662)

Species Orthologous Gene IDs
pyrus_communis pycom09g00990 pycom14g13770 pycom14g13780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
AarI CACCTGC 2 cut(s) 130, 742
AatII GACGTC 1 cut(s) 110
Acc36I ACCTGC 2 cut(s) 130, 742
AccB1I GGYRCC 1 cut(s) 850
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 192
AciI CCGC 8 cut(s) 14, 17, 165, 372, 405, 567, 573, 594
AclWI GGATC 2 cut(s) 428, 429
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 55
AcyI GRCGYC 2 cut(s) 84, 107
AfaI GTAC 3 cut(s) 68, 644, 677
AfiI CCNNNNNNNGG 3 cut(s) 418, 662, 689
AgeI ACCGGT 1 cut(s) 31
AgsI TTSAA 4 cut(s) 209, 341, 472, 724
AjnI CCWGG 1 cut(s) 832
AluBI AGCT 4 cut(s) 429, 662, 863, 869
AluI AGCT 4 cut(s) 429, 662, 863, 869
Alw21I GWGCWC 2 cut(s) 174, 381
Alw26I GTCTC 4 cut(s) 324, 506, 617, 660
AlwI GGATC 2 cut(s) 428, 429
AoxI GGCC 3 cut(s) 253, 367, 653
ApaI GGGCCC 1 cut(s) 257
ApeKI GCWGC 4 cut(s) 558, 561, 564, 570
ApoI RAATTY 1 cut(s) 272
AsiGI ACCGGT 1 cut(s) 31
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 3 cut(s) 253, 254, 368
AsuHPI GGTGA 3 cut(s) 111, 608, 719
BaeGI GKGCMC 2 cut(s) 257, 853
BanI GGYRCC 1 cut(s) 850
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 692, 807
Bbv12I GWGCWC 2 cut(s) 174, 381
BbvI GCAGC 4 cut(s) 570, 573, 576, 582
BccI CCATC 4 cut(s) 443, 449, 687, 702
BceAI ACGGC 4 cut(s) 112, 152, 313, 359
BciT130I CCWGG 1 cut(s) 834
BcoDI GTCTC 4 cut(s) 324, 506, 617, 660
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 858
BfuAI ACCTGC 2 cut(s) 130, 742
BisI GCNGC 6 cut(s) 15, 559, 562, 565, 568, 571
BlsI GCNGC 6 cut(s) 16, 560, 563, 566, 569, 572
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 834
BmgT120I GGNCC 3 cut(s) 253, 254, 368
BmiI GGNNCC 3 cut(s) 255, 370, 852
BmrFI CCNGG 1 cut(s) 834
BpiI GAAGAC 2 cut(s) 692, 807
BpmI CTGGAG 2 cut(s) 684, 849
Bpu10I CCTNAGC 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 420
BsaHI GRCGYC 2 cut(s) 84, 107
BsaJI CCNNGG 2 cut(s) 731, 832
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 418, 662, 689
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 694, 1008
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 2 cut(s) 731, 832
BseGI GGATG 2 cut(s) 679, 713
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 3 cut(s) 418, 662, 689
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 694, 1008
BseRI GAGGAG 3 cut(s) 512, 591, 635
BseSI GKGCMC 2 cut(s) 257, 853
BseXI GCAGC 4 cut(s) 570, 573, 576, 582
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 255, 369, 655
BshNI GGYRCC 1 cut(s) 850
BshTI ACCGGT 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 174, 381
BsiSI CCGG 2 cut(s) 32, 656
BslI CCNNNNNNNGG 3 cut(s) 418, 662, 689
BsmAI GTCTC 4 cut(s) 324, 506, 617, 660
BsmBI CGTCTC 1 cut(s) 324
BsnI GGCC 3 cut(s) 255, 369, 655
Bsp120I GGGCCC 1 cut(s) 253
Bsp1286I GDGCHC 4 cut(s) 174, 257, 381, 853
Bsp143I GATC 3 cut(s) 133, 421, 433
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 8 cut(s) 14, 17, 165, 372, 405, 567, 573, 594
BspANI GGCC 3 cut(s) 255, 369, 655
BspCNI CTCAG 1 cut(s) 316
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 255, 370, 852
BspMI ACCTGC 2 cut(s) 130, 742
BspPI GGATC 2 cut(s) 428, 429
BspT107I GGYRCC 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 2 cut(s) 694, 1008
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 731, 832
BssMI GATC 3 cut(s) 133, 421, 433
BssNI GRCGYC 2 cut(s) 84, 107
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 2 cut(s) 235, 671
Bst6I CTCTTC 3 cut(s) 489, 930, 939
BstACI GRCGYC 2 cut(s) 84, 107
BstDEI CTNAG 3 cut(s) 324, 759, 912
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 679, 713
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 3 cut(s) 136, 424, 436
BstMAI GTCTC 4 cut(s) 324, 506, 617, 660
BstMBI GATC 3 cut(s) 133, 421, 433
BstMWI GCNNNNNNNGC 4 cut(s) 558, 564, 567, 570
BstNI CCWGG 1 cut(s) 834
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 858
BstSLI GKGCMC 2 cut(s) 257, 853
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 570, 573, 576, 582
BstV2I GAAGAC 2 cut(s) 692, 807
BsuRI GGCC 3 cut(s) 255, 369, 655
BtsCI GGATG 2 cut(s) 679, 713
BtsIMutI CAGTG 1 cut(s) 51
BtuMI TCGCGA 1 cut(s) 192
BveI ACCTGC 2 cut(s) 130, 742
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 3 cut(s) 253, 254, 368
CseI GACGC 2 cut(s) 73, 163
Csp6I GTAC 3 cut(s) 67, 643, 676
CspAI ACCGGT 1 cut(s) 31
CviAII CATG 1 cut(s) 1022
CviQI GTAC 3 cut(s) 67, 643, 676
DdeI CTNAG 3 cut(s) 324, 759, 912
DpnI GATC 3 cut(s) 135, 423, 435
DpnII GATC 3 cut(s) 133, 421, 433
Eam1104I CTCTTC 3 cut(s) 489, 930, 939
EarI CTCTTC 3 cut(s) 489, 930, 939
Eco24I GRGCYC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 1 cut(s) 1025
FaiI YATR 3 cut(s) 63, 845, 1023
FatI CATG 1 cut(s) 1021
FauI CCCGC 4 cut(s) 10, 172, 379, 412
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 6 cut(s) 15, 559, 562, 565, 568, 571
FokI GGATG 2 cut(s) 666, 720
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 6 cut(s) 15, 559, 562, 565, 568, 571
FspBI CTAG 1 cut(s) 627
GlaI GCGC 1 cut(s) 126
GluI GCNGC 6 cut(s) 15, 559, 562, 565, 568, 571
GsuI CTGGAG 2 cut(s) 684, 849
HaeIII GGCC 3 cut(s) 255, 369, 655
HapII CCGG 2 cut(s) 32, 656
HgaI GACGC 2 cut(s) 73, 163
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 2 cut(s) 84, 107
Hin1II CATG 1 cut(s) 1025
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HpaII CCGG 2 cut(s) 32, 656
HphI GGTGA 3 cut(s) 111, 608, 719
Hpy166II GTNNAC 1 cut(s) 289
Hpy188III TCNNGA 4 cut(s) 191, 209, 323, 872
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 3 cut(s) 89, 109, 843
HpyCH4III ACNGT 2 cut(s) 235, 671
HpyCH4IV ACGT 3 cut(s) 107, 291, 841
HpyCH4V TGCA 1 cut(s) 717
HpyF10VI GCNNNNNNNGC 4 cut(s) 558, 564, 567, 570
HpyF3I CTNAG 3 cut(s) 324, 759, 912
HpySE526I ACGT 3 cut(s) 107, 291, 841
Hsp92I GRCGYC 2 cut(s) 84, 107
Hsp92II CATG 1 cut(s) 1025
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 133, 421, 433
LmnI GCTCC 2 cut(s) 426, 868
Lsp1109I GCAGC 4 cut(s) 570, 573, 576, 582
MaeI CTAG 1 cut(s) 627
MaeII ACGT 3 cut(s) 107, 291, 841
MaeIII GTNAC 1 cut(s) 117
MalI GATC 3 cut(s) 135, 423, 435
MboI GATC 3 cut(s) 133, 421, 433
MboII GAAGA 8 cut(s) 503, 506, 619, 697, 794, 812, 947, 956
MfeI CAATTG 1 cut(s) 694
MhlI GDGCHC 4 cut(s) 174, 257, 381, 853
MluCI AATT 9 cut(s) 57, 221, 272, 395, 461, 694, 712, 785, 897
MmeI TCCRAC 2 cut(s) 128, 921
MseI TTAA 2 cut(s) 879, 1036
MspA1I CMGCKG 3 cut(s) 14, 567, 573
MspI CCGG 2 cut(s) 32, 656
MspR9I CCNGG 1 cut(s) 834
MunI CAATTG 1 cut(s) 694
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 558, 564, 567, 570
NdeII GATC 3 cut(s) 133, 421, 433
NlaIII CATG 1 cut(s) 1025
NlaIV GGNNCC 3 cut(s) 255, 370, 852
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 117
NruI TCGCGA 1 cut(s) 192
PaqCI CACCTGC 2 cut(s) 130, 742
PcsI WCGNNNNNNNCGW 5 cut(s) 113, 165, 231, 372, 680
PinAI ACCGGT 1 cut(s) 31
PkrI GCNGC 6 cut(s) 16, 560, 563, 566, 569, 572
PsiI TTATAA 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 832
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 3 cut(s) 255, 370, 852
PspOMI GGGCCC 1 cut(s) 253
PspPI GGNCC 3 cut(s) 253, 254, 368
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 3 cut(s) 68, 644, 677
RsaNI GTAC 3 cut(s) 67, 643, 676
SaqAI TTAA 2 cut(s) 879, 1036
SatI GCNGC 6 cut(s) 15, 559, 562, 565, 568, 571
Sau3AI GATC 3 cut(s) 133, 421, 433
Sau96I GGNCC 3 cut(s) 253, 254, 368
ScaI AGTACT 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 4 cut(s) 174, 257, 381, 853
SfcI CTRYAG 1 cut(s) 858
Sse9I AATT 9 cut(s) 57, 221, 272, 395, 461, 694, 712, 785, 897
SsiI CCGC 8 cut(s) 14, 17, 165, 372, 405, 567, 573, 594
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 832
TaaI ACNGT 2 cut(s) 235, 671
TaiI ACGT 3 cut(s) 110, 294, 844
TaqI TCGA 7 cut(s) 87, 159, 225, 381, 399, 414, 432
TaqII GACCGA 1 cut(s) 824
TasI AATT 9 cut(s) 57, 221, 272, 395, 461, 694, 712, 785, 897
TatI WGTACW 1 cut(s) 66
TauI GCSGC 2 cut(s) 17, 570
Tru1I TTAA 2 cut(s) 879, 1036
Tru9I TTAA 2 cut(s) 879, 1036
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 4 cut(s) 558, 561, 564, 570
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 1010
TspGWI ACGGA 4 cut(s) 105, 306, 322, 977
TspRI CASTG 1 cut(s) 51
XagI CCTNNNNNAGG 1 cut(s) 416
XapI RAATTY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 1 cut(s) 627
ZraI GACGTC 1 cut(s) 108
ZrmI AGTACT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.