pycom09g05920

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
4396837 .. 4398909
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGGTTATTAGCTACATCTGTTTGCCACAGGAATCTACGCCTACGAATAATTATGAAGTGTATGAAAATACTAAGAAGGAACTCCAGCAAGCGATATCTAACCTTGAAGAACAGCTCAAGGAACAAAAAACAAGAGAAGATGCTTTAAAATCTGAGGTTAAAAATCTCAAGGCTGAGGTTGCTGAGAAGCCTTTATTGCAGAATTCTCTCAAGGAACTGCAAACCAAGTCAGCTCACTGTGAAGAAGAGAGCAGAAAACTAGTTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTGTTGCTGAGAAGGATGAATCAGTTGAACAACTTCAGGCTACAAAAAGGACAATTGAAGATTTAAAGCAGCAGCATTCTTCTCAATGGCAGAAACTACAATCTCAGATATCTTCGCTTATGGATGAGAGCAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTCTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTGTTGCTAAGAACGATGAATCAGTTGAACAACTTCAGGCTGCAAAAAGGACAATTGAAGATTTAAAGCAGCAGCATTCTTCTCAAGGGCAGAAACTACAATCTCAGATATCTTCGCTTATGGATGAGAACCAGAGCAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTGTTGCTGAGAAGGATGAATCAGTTGAACAACTTCAGGCCGCAAAAAGGACTATTGAAGATTTAATGCAGCAGCATTCTTCTCAAGGGCAGAAACTAGAATCTCAGATATCTTCGCTTACAGATGAGAACATGTTGCTTAATGAAGTGCATCAAAATACTAAGAAGGAACTGCAGCAAGTGATATCCAACCTTGAAGGACAGCTCAAGGAACAAAAAGCAGGAGAAGTTGCTTTAAGATCTGAGTTGAAAATCTCAAGGCTGAGGTTGCTGAGAAACTTTTGTTGCAGAATTGCCTCAAGGATCTCGAAGAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

42.24

Weight (kDa)

5.52

Isoelectric Point (pI)

62.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022359)

Species Orthologous Gene IDs
malus_domestica MD09G1138300.v1.1
pyrus_communis pycom09g05910 pycom09g05920 pycom09g05940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 296, 746
AciI CCGC 1 cut(s) 834
AclWI GGATC 1 cut(s) 1103
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 3 cut(s) 362, 584, 812
AfiI CCNNNNNNNGG 1 cut(s) 840
AflIII ACRYGT 1 cut(s) 924
AhlI ACTAGT 1 cut(s) 259
AluBI AGCT 9 cut(s) 12, 115, 233, 280, 485, 502, 713, 730, 997
AluI AGCT 9 cut(s) 12, 115, 233, 280, 485, 502, 713, 730, 997
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 1 cut(s) 1103
AoxI GGCC 1 cut(s) 831
ApeKI GCWGC 8 cut(s) 412, 415, 605, 634, 637, 862, 865, 967
ApoI RAATTY 1 cut(s) 202
Asp700I GAANNNNTTC 3 cut(s) 375, 597, 825
BbvCI CCTCAGC 4 cut(s) 174, 486, 714, 1055
BbvI GCAGC 8 cut(s) 424, 427, 592, 646, 649, 874, 877, 979
BcoDI GTCTC 1 cut(s) 520
BcuI ACTAGT 1 cut(s) 259
BfaI CTAG 4 cut(s) 260, 482, 710, 890
BfmI CTRYAG 1 cut(s) 965
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 9 cut(s) 413, 416, 606, 635, 638, 834, 863, 866, 968
BlsI GCNGC 9 cut(s) 414, 417, 607, 636, 639, 835, 864, 867, 969
BmsI GCATC 2 cut(s) 130, 952
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 4 cut(s) 174, 486, 714, 1055
BpuEI CTTGAG 8 cut(s) 101, 152, 194, 633, 861, 983, 1033, 1075
Bsc4I CCNNNNNNNGG 1 cut(s) 840
BseGI GGATG 4 cut(s) 364, 472, 694, 814
BseLI CCNNNNNNNGG 1 cut(s) 840
BseXI GCAGC 8 cut(s) 424, 427, 592, 646, 649, 874, 877, 979
BshFI GGCC 1 cut(s) 833
BslI CCNNNNNNNGG 1 cut(s) 840
BsmAI GTCTC 1 cut(s) 520
BsmI GAATGC 3 cut(s) 418, 640, 868
BsnI GGCC 1 cut(s) 833
Bsp143I GATC 2 cut(s) 1031, 1095
BspACI CCGC 1 cut(s) 834
BspANI GGCC 1 cut(s) 833
BspMAI CTGCAG 1 cut(s) 969
BspPI GGATC 1 cut(s) 1103
BssMI GATC 2 cut(s) 1031, 1095
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 240, 1097
BstC8I GCNNGC 1 cut(s) 90
BstF5I GGATG 4 cut(s) 364, 472, 694, 814
BstKTI GATC 2 cut(s) 1034, 1098
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 2 cut(s) 1031, 1095
BstMWI GCNNNNNNNGC 3 cut(s) 179, 196, 1060
BstNSI RCATGY 1 cut(s) 928
BstSFI CTRYAG 1 cut(s) 965
BstV1I GCAGC 8 cut(s) 424, 427, 592, 646, 649, 874, 877, 979
BstX2I RGATCY 2 cut(s) 1031, 1095
BstYI RGATCY 2 cut(s) 1031, 1095
BsuRI GGCC 1 cut(s) 833
BtsCI GGATG 4 cut(s) 364, 472, 694, 814
BtsI GCAGTG 3 cut(s) 339, 561, 789
BtsIMutI CAGTG 4 cut(s) 235, 339, 561, 789
Cac8I GCNNGC 1 cut(s) 90
CspCI CAANNNNNGTGG 6 cut(s) 328, 363, 550, 585, 778, 813
CviAII CATG 1 cut(s) 925
DpnI GATC 2 cut(s) 1033, 1097
DpnII GATC 2 cut(s) 1031, 1095
DraI TTTAAA 3 cut(s) 147, 408, 630
Eam1104I CTCTTC 2 cut(s) 240, 1097
EarI CTCTTC 2 cut(s) 240, 1097
Eco32I GATATC 5 cut(s) 96, 453, 675, 903, 978
Eco57I CTGAAG 3 cut(s) 362, 584, 812
EcoRI GAATTC 1 cut(s) 202
EcoRV GATATC 5 cut(s) 96, 453, 675, 903, 978
FaeI CATG 1 cut(s) 928
FatI CATG 1 cut(s) 924
FblI GTMKAC 2 cut(s) 296, 746
Fnu4HI GCNGC 9 cut(s) 413, 416, 606, 635, 638, 834, 863, 866, 968
FokI GGATG 4 cut(s) 371, 479, 701, 821
Fsp4HI GCNGC 9 cut(s) 413, 416, 606, 635, 638, 834, 863, 866, 968
FspBI CTAG 4 cut(s) 260, 482, 710, 890
GluI GCNGC 9 cut(s) 413, 416, 606, 635, 638, 834, 863, 866, 968
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 833
Hin1II CATG 1 cut(s) 928
HindIII AAGCTT 3 cut(s) 278, 500, 728
HinfI GANTC 8 cut(s) 32, 305, 362, 527, 584, 755, 812, 893
Hpy166II GTNNAC 2 cut(s) 297, 747
Hpy188I TCNGA 5 cut(s) 154, 450, 672, 900, 1036
Hpy188III TCNNGA 1 cut(s) 1099
Hpy8I GTNNAC 2 cut(s) 297, 747
HpyAV CCTTC 5 cut(s) 70, 349, 799, 952, 983
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 7 cut(s) 199, 220, 608, 862, 943, 967, 1080
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 196, 1060
Hsp92II CATG 1 cut(s) 928
Kzo9I GATC 2 cut(s) 1031, 1095
LpnPI CCDG 7 cut(s) 14, 98, 365, 587, 710, 815, 999
Lsp1109I GCAGC 8 cut(s) 424, 427, 592, 646, 649, 874, 877, 979
LweI GCATC 2 cut(s) 130, 952
MaeI CTAG 4 cut(s) 260, 482, 710, 890
MaeIII GTNAC 3 cut(s) 317, 539, 767
MalI GATC 2 cut(s) 1033, 1097
MboI GATC 2 cut(s) 1031, 1095
MfeI CAATTG 2 cut(s) 396, 618
MflI RGATCY 2 cut(s) 1031, 1095
MluCI AATT 6 cut(s) 49, 202, 396, 618, 1083, 1108
MlyI GAGTC 3 cut(s) 314, 536, 764
MmeI TCCRAC 1 cut(s) 1005
MnlI CCTC 7 cut(s) 148, 169, 259, 481, 709, 1050, 1099
MroXI GAANNNNTTC 3 cut(s) 375, 597, 825
MunI CAATTG 2 cut(s) 396, 618
Mva1269I GAATGC 3 cut(s) 418, 640, 868
MwoI GCNNNNNNNGC 3 cut(s) 179, 196, 1060
NdeII GATC 2 cut(s) 1031, 1095
NlaIII CATG 1 cut(s) 928
NmuCI GTSAC 3 cut(s) 317, 539, 767
NspI RCATGY 1 cut(s) 928
PciI ACATGT 1 cut(s) 924
PctI GAATGC 3 cut(s) 418, 640, 868
PdmI GAANNNNTTC 3 cut(s) 375, 597, 825
PfeI GAWTC 5 cut(s) 32, 362, 584, 812, 893
PkrI GCNGC 9 cut(s) 414, 417, 607, 636, 639, 835, 864, 867, 969
PleI GAGTC 3 cut(s) 313, 535, 763
PpsI GAGTC 3 cut(s) 313, 535, 763
PscI ACATGT 1 cut(s) 924
PstI CTGCAG 1 cut(s) 969
PsuI RGATCY 2 cut(s) 1031, 1095
SatI GCNGC 9 cut(s) 413, 416, 606, 635, 638, 834, 863, 866, 968
Sau3AI GATC 2 cut(s) 1031, 1095
SchI GAGTC 3 cut(s) 314, 536, 764
SfaNI GCATC 2 cut(s) 130, 952
SfcI CTRYAG 1 cut(s) 965
SmlI CTYRAG 8 cut(s) 116, 167, 209, 648, 876, 998, 1048, 1090
SmoI CTYRAG 8 cut(s) 116, 167, 209, 648, 876, 998, 1048, 1090
SpeI ACTAGT 1 cut(s) 259
Sse9I AATT 6 cut(s) 49, 202, 396, 618, 1083, 1108
SsiI CCGC 1 cut(s) 834
SspI AATATT 3 cut(s) 335, 557, 785
SspMI CTAG 4 cut(s) 260, 482, 710, 890
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 1100
TasI AATT 6 cut(s) 49, 202, 396, 618, 1083, 1108
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 5 cut(s) 32, 362, 584, 812, 893
TscAI CASTG 4 cut(s) 242, 346, 568, 796
TseFI GTSAC 3 cut(s) 317, 539, 767
TseI GCWGC 8 cut(s) 412, 415, 605, 634, 637, 862, 865, 967
Tsp45I GTSAC 3 cut(s) 317, 539, 767
TspDTI ATGAA 6 cut(s) 69, 78, 375, 597, 825, 951
TspRI CASTG 4 cut(s) 242, 346, 568, 796
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 928
XmiI GTMKAC 2 cut(s) 296, 746
XmnI GAANNNNTTC 3 cut(s) 375, 597, 825
XspI CTAG 4 cut(s) 260, 482, 710, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.