pycom09g05940

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
4403755 .. 4406480
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1953 bp
ATGGTTATTAGCTACATCTGTTTGCCACAGGAATCTAGGCCTACGAATAATTATGAAGTGTATGAAAATACTAAGAAGGAACTCCAGCAAGCGATATCTAACCTTGAAGAACAGCTCAAGGAACAAAAAACAAGAGAAGATGCTTTAAAATCTGAGGTTAAAAATCTCAAGGCTGAGGTTGCTGAGAAGCCTTTATTGCAGAATTCTCTCAAGGAACTGCAAACCAAGTCAGCTCACTGTGAAGAAGAGAGCAGAAAACTAGTTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTGTTGCTGAGAAGGATGAATCAGTTGAACAACTTCAGGCTACAAAAAGGACAATTGAAGATTTAAAGCAGCAGCATTCTTCTCAATGGCAGAAACTACAATCTCAGGTTTGCACCAAACTTTTTTGTAATTATTTTGCGGCTAAATATTGTTGCTTTATGGTTATTAGCTACATTTGTTTGCCACAGATATCTTCGCTTATGGATGAGAGCAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTCTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTGTTGCTAAGAACGATGAATCAGTTGAACAACTTCAGGCTGCAAAAAGGACAATTGAAGATTTAAAGCAGCAGCATTCTTCTCAAGGGCAGAAACTACAATCTCAGGTTTGCACCAAACTTTTTTGTAATTATTTTGCGGCTAAATATTGTTGCTTTATGGTTATTAGCTGCATTTGTTTGCCACAGATATCTTCGCTTATGGATGAGAACCGCCTGCTTAATGAAGTGCGTCAAAATACTAAGAAAGAACTCCAGCAGGTGATATTCAACCTTGAAGAACAGCCTAAGGAACAAAAAGCAGGAGAAGCTGCTTTAAAATCTGAGGTTGACAATCTCAAGGTTGAGGCTGCTGAGAAGCCTTTGTTGCAGAATTCTCTCAAGGAACTGCAAACCAAGTCAGCTCACTTTGACGAAGAGAGAAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTGTTGCTGAGAAGGATGAATCAGTTGAACAACTTCAGGCTGCAAAAAGGACAATTGAAGATTTAAAGCAGCAGCATTCTTCTCAAGGGCAGAAACTACAATCTCAGGTTTGCACCAAACTTTTTTGTAATTATTTTGCGGCTAAATGTTGTTTCTTTATGGTTATTAGCTACATCTGTTTGCCACAGATATCTTCGCTTACGGATGAGAACAACCTGCTTAATGAAGTGCATCAAAATACTAAGAAGGAACTCCAGCAAGCGATATCTAACCTTGAAGAACTGCTCAAGGAACAAAAGGCAGGAGAAGCTGCTTTAAAATCTGAGGTTGAAAATCTCAAGGCTGAGGTTGCTGAGAAAACTTTGTTGCAGAATTCTCTCAAGGAACTGCAAACTAAGTTAGCTCCCTATGAAGAAGAGAGCAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTGTTGCTGAGAAGGATGAATCAGTTGAACAACTTCAGGCCGCAAAAAGGACTATTGAAGATTTAATGCAGCAGCATTCTTCTCAAGGGCAGAAACTAGAATCTCAGATATCTTCGCTTACAGATGAGAACATGTTGCTTAATGAAGTGCATCAAAATACTAAGAAGGAACTGCAGCAAGTGATATCCAACCTTGAAGGACAGCTCAAGGAACAAAAAGCAGGAGAAGTTGCTTTAAGATCTGAGTTGAAAATCTCAAGGCTGAGGAACTTGCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

651

Amino Acids

74.17

Weight (kDa)

5.39

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022359)

Species Orthologous Gene IDs
malus_domestica MD09G1138300.v1.1
pyrus_communis pycom09g05910 pycom09g05920 pycom09g05940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 895
Acc36I ACCTGC 2 cut(s) 895, 1383
AccI GTMKAC 3 cut(s) 296, 1112, 1625
AciI CCGC 5 cut(s) 482, 785, 859, 1298, 1713
AcsI RAATTY 3 cut(s) 202, 1018, 1531
AcuI CTGAAG 4 cut(s) 362, 665, 1178, 1691
AfiI CCNNNNNNNGG 1 cut(s) 1719
AflIII ACRYGT 1 cut(s) 1803
AhlI ACTAGT 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 601
AoxI GGCC 2 cut(s) 38, 1710
ApoI RAATTY 3 cut(s) 202, 1018, 1531
Asp700I GAANNNNTTC 4 cut(s) 375, 678, 1191, 1704
AsuHPI GGTGA 1 cut(s) 919
AxyI CCTNAGG 1 cut(s) 933
BbvCI CCTCAGC 6 cut(s) 174, 567, 1080, 1503, 1593, 1934
BcoDI GTCTC 1 cut(s) 601
BcuI ACTAGT 1 cut(s) 259
BfaI CTAG 6 cut(s) 36, 260, 563, 1076, 1589, 1769
BfmI CTRYAG 1 cut(s) 1844
BfuAI ACCTGC 2 cut(s) 895, 1383
BglII AGATCT 1 cut(s) 1910
BmsI GCATC 3 cut(s) 130, 1399, 1831
BpmI CTGGAG 3 cut(s) 68, 884, 1397
Bpu10I CCTNAGC 6 cut(s) 174, 567, 1080, 1503, 1593, 1934
Bsc4I CCNNNNNNNGG 1 cut(s) 1719
Bse21I CCTNAGG 1 cut(s) 933
BseGI GGATG 6 cut(s) 364, 553, 856, 1180, 1369, 1693
BseLI CCNNNNNNNGG 1 cut(s) 1719
BshFI GGCC 2 cut(s) 40, 1712
BslI CCNNNNNNNGG 1 cut(s) 1719
BsmAI GTCTC 1 cut(s) 601
BsmI GAATGC 4 cut(s) 418, 721, 1234, 1747
BsnI GGCC 2 cut(s) 40, 1712
Bsp143I GATC 1 cut(s) 1910
BspACI CCGC 5 cut(s) 482, 785, 859, 1298, 1713
BspANI GGCC 2 cut(s) 40, 1712
BspMAI CTGCAG 1 cut(s) 1848
BspMI ACCTGC 2 cut(s) 895, 1383
BssMI GATC 1 cut(s) 1910
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 3 cut(s) 240, 1056, 1569
BstC8I GCNNGC 3 cut(s) 90, 863, 1419
BstF5I GGATG 6 cut(s) 364, 553, 856, 1180, 1369, 1693
BstKTI GATC 1 cut(s) 1913
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 1 cut(s) 1910
BstMWI GCNNNNNNNGC 6 cut(s) 179, 196, 953, 1012, 1466, 1508
BstNSI RCATGY 1 cut(s) 1807
BstSFI CTRYAG 1 cut(s) 1844
BstX2I RGATCY 1 cut(s) 1910
BstYI RGATCY 1 cut(s) 1910
Bsu36I CCTNAGG 1 cut(s) 933
BsuRI GGCC 2 cut(s) 40, 1712
BtsCI GGATG 6 cut(s) 364, 553, 856, 1180, 1369, 1693
BtsI GCAGTG 4 cut(s) 339, 642, 1155, 1668
BtsIMutI CAGTG 5 cut(s) 235, 339, 642, 1155, 1668
BveI ACCTGC 2 cut(s) 895, 1383
Cac8I GCNNGC 3 cut(s) 90, 863, 1419
CseI GACGC 1 cut(s) 866
CspCI CAANNNNNGTGG 8 cut(s) 328, 363, 631, 666, 1144, 1179, 1657, 1692
CviAII CATG 1 cut(s) 1804
DpnI GATC 1 cut(s) 1912
DpnII GATC 1 cut(s) 1910
DraI TTTAAA 6 cut(s) 147, 408, 711, 963, 1224, 1476
Eam1104I CTCTTC 3 cut(s) 240, 1056, 1569
EarI CTCTTC 3 cut(s) 240, 1056, 1569
Eco147I AGGCCT 1 cut(s) 40
Eco32I GATATC 7 cut(s) 96, 534, 837, 1350, 1425, 1782, 1857
Eco57I CTGAAG 4 cut(s) 362, 665, 1178, 1691
Eco81I CCTNAGG 1 cut(s) 933
EcoRI GAATTC 3 cut(s) 202, 1018, 1531
EcoRV GATATC 7 cut(s) 96, 534, 837, 1350, 1425, 1782, 1857
FaeI CATG 1 cut(s) 1807
FatI CATG 1 cut(s) 1803
FblI GTMKAC 3 cut(s) 296, 1112, 1625
FokI GGATG 6 cut(s) 371, 560, 863, 1187, 1376, 1700
FspBI CTAG 6 cut(s) 36, 260, 563, 1076, 1589, 1769
GsuI CTGGAG 3 cut(s) 68, 884, 1397
HaeIII GGCC 2 cut(s) 40, 1712
HgaI GACGC 1 cut(s) 866
Hin1II CATG 1 cut(s) 1807
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HindIII AAGCTT 4 cut(s) 278, 581, 1094, 1607
HphI GGTGA 1 cut(s) 919
Hpy166II GTNNAC 4 cut(s) 297, 976, 1113, 1626
Hpy188I TCNGA 5 cut(s) 154, 970, 1483, 1779, 1915
Hpy8I GTNNAC 4 cut(s) 297, 976, 1113, 1626
HpyAV CCTTC 7 cut(s) 70, 349, 1165, 1399, 1678, 1831, 1862
HpyCH4III ACNGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 196, 953, 1012, 1466, 1508
Hsp92II CATG 1 cut(s) 1807
Kzo9I GATC 1 cut(s) 1910
LmnI GCTCC 1 cut(s) 1567
LweI GCATC 3 cut(s) 130, 1399, 1831
MaeI CTAG 6 cut(s) 36, 260, 563, 1076, 1589, 1769
MaeIII GTNAC 4 cut(s) 317, 620, 1133, 1646
MalI GATC 1 cut(s) 1912
MboI GATC 1 cut(s) 1910
MfeI CAATTG 3 cut(s) 396, 699, 1212
MflI RGATCY 1 cut(s) 1910
MlyI GAGTC 4 cut(s) 314, 617, 1130, 1643
MmeI TCCRAC 1 cut(s) 1884
MroXI GAANNNNTTC 4 cut(s) 375, 678, 1191, 1704
MunI CAATTG 3 cut(s) 396, 699, 1212
Mva1269I GAATGC 4 cut(s) 418, 721, 1234, 1747
MwoI GCNNNNNNNGC 6 cut(s) 179, 196, 953, 1012, 1466, 1508
NdeII GATC 1 cut(s) 1910
NlaIII CATG 1 cut(s) 1807
NmuCI GTSAC 4 cut(s) 317, 620, 1133, 1646
NspI RCATGY 1 cut(s) 1807
PaqCI CACCTGC 1 cut(s) 895
PceI AGGCCT 1 cut(s) 40
PciI ACATGT 1 cut(s) 1803
PctI GAATGC 4 cut(s) 418, 721, 1234, 1747
PdmI GAANNNNTTC 4 cut(s) 375, 678, 1191, 1704
PfeI GAWTC 6 cut(s) 32, 362, 665, 1178, 1691, 1772
PleI GAGTC 4 cut(s) 313, 616, 1129, 1642
PpsI GAGTC 4 cut(s) 313, 616, 1129, 1642
PscI ACATGT 1 cut(s) 1803
PstI CTGCAG 1 cut(s) 1848
PsuI RGATCY 1 cut(s) 1910
Sau3AI GATC 1 cut(s) 1910
SchI GAGTC 4 cut(s) 314, 617, 1130, 1643
SfaNI GCATC 3 cut(s) 130, 1399, 1831
SfcI CTRYAG 1 cut(s) 1844
SpeI ACTAGT 1 cut(s) 259
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 5 cut(s) 482, 785, 859, 1298, 1713
SspI AATATT 6 cut(s) 335, 491, 638, 794, 1151, 1664
SspMI CTAG 6 cut(s) 36, 260, 563, 1076, 1589, 1769
StuI AGGCCT 1 cut(s) 40
TaaI ACNGT 1 cut(s) 239
TauI GCSGC 4 cut(s) 485, 788, 1301, 1715
TfiI GAWTC 6 cut(s) 32, 362, 665, 1178, 1691, 1772
TscAI CASTG 5 cut(s) 242, 346, 649, 1162, 1675
TseFI GTSAC 4 cut(s) 317, 620, 1133, 1646
Tsp45I GTSAC 4 cut(s) 317, 620, 1133, 1646
TspGWI ACGGA 1 cut(s) 1376
TspRI CASTG 5 cut(s) 242, 346, 649, 1162, 1675
XapI RAATTY 3 cut(s) 202, 1018, 1531
XceI RCATGY 1 cut(s) 1807
XmiI GTMKAC 3 cut(s) 296, 1112, 1625
XmnI GAANNNNTTC 4 cut(s) 375, 678, 1191, 1704
XspI CTAG 6 cut(s) 36, 260, 563, 1076, 1589, 1769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.