Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0024308

Physical Location & Seq

Genomic Coordinates Forward (+)

5502922 .. 5503890

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCGGAACTATCCTGAGTACAAGATTGTGGTCCTTGACAAGCTTGATTACTGTTCAAATTTGAAAAACCTTCACCCTTCACATTCATCACCCAGCTTTAAGTTTATCAAGGGAGACATCTGCAGTGCTGACTTTGTCAATTCAGTTCTTCTCAACGAGTCCATTGATACAATAATGCACTTTGCAGCCCAGACCCATGTCGACAACTCTTTTGGTAACAGCTTTGAGTTCACTAAAAACAACGTCTACGGAACACAAGTTCTCTTAGAAGCATGCAAAGTCACTGGTCAAATCAAAAGGTTCATTCATGTAAGCACAGACGAAGTGTATGGGGAGACAGATGAGAATGCTGTGGTGGGAAATCATGAGGCTTCTCAGCTTCTTCCGACAAACCCCTACTCTGCAACTAAAGCTGGAGCGGAGATGCTTGTTATGGCGTACGGACGTTCATATGGATTGCCGGTGATAACGACCAGAGGAAATAATGTTTACGGCCCCAATCAGTTTCCTGAAAAGATGATTCCAAAATTTATTCTATTGGCTATGCAAGGGAAGCATCTTCCGATTTATGGAAATGGATCCAATGTCAGAAGTTATCTCTATTGTGAGGATGTCGCAGAGGCATTTGAAGTCATTCTCCATAGGGGTGAGGTAGGCTGTGTCTACAACATCGGGACGAAGAAAGAGAGGAGATTGATTGATGTGGCTAGGGAAATTTGCCAACACTTCTCTTTGAACCCAGATGCACATATTAAGTTTGTGCAGGATAGGCCTTTTCATGATAAGAGATATTTCATAGATTACGAGAAGCTGAAAGCCTTGGGATGGTCCCAACAGACATCGTGGGAGGATGGGTTGAAGAAGACATTGGACTGGTACGTGAAGAATCCCGACTGGTGGGGGGATGTTTCTGGAACACTAGTTGCTCGCCCGAGAAACTGCGAAGTTTCTTCAAATTTTTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009812 GO:0009813 GO:0009914 GO:0009966 GO:0009987 GO:0010253 GO:0010280 GO:0010315 GO:0010646 GO:0010817 GO:0010928 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0023051 GO:0030054 GO:0030154 GO:0032502 GO:0033478 GO:0034641 GO:0034654 GO:0042127 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0048583 GO:0048869 GO:0050377 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0055044 GO:0055086 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

323

Amino Acids

36.62

Weight (kDa)

6.42

Isoelectric Point (pI)

22.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDP_Man_Dehyd	PF16363	3 - 289	7.5e-63	GDP-mannose 4,6 dehydratase
Epimerase	PF01370	6 - 225	2.8e-49	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	28 - 208	7.6e-20	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	33 - 184	5.1e-16	Male sterility protein
Polysacc_synt_2	PF02719	33 - 254	8.8e-15	Polysaccharide biosynthesis protein
RmlD_sub_bind	PF04321	37 - 291	2.2e-13	RmlD substrate binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024308)

Species	Orthologous Gene IDs
malus_domestica	MD09G1154200.v1.1 MD09G1154400.v1.1
pyrus_communis	pycom09g07330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	419
AccI	GTMKAC	3 cut(s)	201, 246, 663
AciI	CCGC	2 cut(s)	4, 419
AclWI	GGATC	2 cut(s)	573, 586
AcsI	RAATTY	4 cut(s)	58, 527, 714, 955
AfaI	GTAC	3 cut(s)	20, 440, 878
AfiI	CCNNNNNNNGG	3 cut(s)	569, 825, 897
AgsI	TTSAA	6 cut(s)	57, 64, 629, 736, 859, 954
AhlI	ACTAGT	1 cut(s)	919
AjuI	GAANNNNNNNTTGG	2 cut(s)	851, 883
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
AluBI	AGCT	6 cut(s)	43, 96, 222, 379, 413, 811
AluI	AGCT	6 cut(s)	43, 96, 222, 379, 413, 811
Alw26I	GTCTC	2 cut(s)	108, 329
AlwI	GGATC	2 cut(s)	573, 586
Ama87I	CYCGRG	1 cut(s)	931
AoxI	GGCC	2 cut(s)	493, 770
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	4 cut(s)	58, 527, 714, 955
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
Asp700I	GAANNNNTTC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	31, 494, 828
AsuHPI	GGTGA	4 cut(s)	65, 81, 475, 659
AvaI	CYCGRG	1 cut(s)	931
AvaII	GGWCC	2 cut(s)	31, 828
BamHI	GGATCC	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	869
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	2 cut(s)	819, 845
BceAI	ACGGC	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	108, 329
BcuI	ACTAGT	1 cut(s)	919
BfaI	CTAG	2 cut(s)	708, 920
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme18I	GGWCC	2 cut(s)	31, 828
BmeT110I	CYCGRG	1 cut(s)	931
BmgT120I	GGNCC	3 cut(s)	31, 494, 828
BmiI	GGNNCC	3 cut(s)	496, 580, 830
BmsI	GCATC	3 cut(s)	414, 565, 733
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	869
BpmI	CTGGAG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	880
BsaJI	CCNNGG	1 cut(s)	819
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bsc4I	CCNNNNNNNGG	3 cut(s)	569, 825, 897
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	3 cut(s)	289, 878, 899
BseDI	CCNNGG	1 cut(s)	819
BseGI	GGATG	4 cut(s)	616, 830, 856, 910
BseLI	CCNNNNNNNGG	3 cut(s)	569, 825, 897
BseMII	CTCAG	2 cut(s)	6, 389
BseNI	ACTGG	3 cut(s)	289, 878, 899
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	782
BshFI	GGCC	2 cut(s)	495, 772
BsiHKCI	CYCGRG	1 cut(s)	931
BsiSI	CCGG	1 cut(s)	461
BsiWI	CGTACG	1 cut(s)	438
BslFI	GGGAC	2 cut(s)	688, 814
BslI	CCNNNNNNNGG	3 cut(s)	569, 825, 897
BsmAI	GTCTC	2 cut(s)	108, 329
BsmFI	GGGAC	2 cut(s)	688, 814
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	495, 772
BsoBI	CYCGRG	1 cut(s)	931
Bsp143I	GATC	1 cut(s)	578
BspACI	CCGC	2 cut(s)	4, 419
BspANI	GGCC	2 cut(s)	495, 772
BspCNI	CTCAG	2 cut(s)	7, 388
BspHI	TCATGA	2 cut(s)	364, 778
BspLI	GGNNCC	3 cut(s)	496, 580, 830
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	2 cut(s)	573, 586
BsrBI	CCGCTC	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	289, 878, 899
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	819
BssMI	GATC	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	819
Bst4CI	ACNGT	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	880
BstC8I	GCNNGC	2 cut(s)	274, 928
BstDEI	CTNAG	3 cut(s)	15, 265, 375
BstF5I	GGATG	4 cut(s)	616, 830, 856, 910
BstKTI	GATC	1 cut(s)	581
BstMAI	GTCTC	2 cut(s)	108, 329
BstMBI	GATC	1 cut(s)	578
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 553, 769
BstNSI	RCATGY	1 cut(s)	276
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	869
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	495, 772
BtsCI	GGATG	4 cut(s)	616, 830, 856, 910
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	130, 282
Cac8I	GCNNGC	2 cut(s)	274, 928
CciI	TCATGA	2 cut(s)	364, 778
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	3 cut(s)	31, 494, 828
Csp6I	GTAC	3 cut(s)	19, 439, 877
CviAII	CATG	5 cut(s)	197, 273, 308, 365, 779
CviQI	GTAC	3 cut(s)	19, 439, 877
DdeI	CTNAG	3 cut(s)	15, 265, 375
DpnI	GATC	1 cut(s)	580
DpnII	GATC	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	819
Eco147I	AGGCCT	1 cut(s)	772
Eco47I	GGWCC	2 cut(s)	31, 828
Eco88I	CYCGRG	1 cut(s)	931
EcoT14I	CCWWGG	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	5 cut(s)	200, 276, 311, 368, 782
FaqI	GGGAC	2 cut(s)	688, 814
FatI	CATG	5 cut(s)	196, 272, 307, 364, 778
FauNDI	CATATG	1 cut(s)	451
FblI	GTMKAC	3 cut(s)	201, 246, 663
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	4 cut(s)	623, 837, 863, 917
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	708, 920
GluI	GCNGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	495, 772
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	5 cut(s)	200, 276, 311, 368, 782
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	158, 520, 886
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	4 cut(s)	65, 81, 475, 659
Hpy166II	GTNNAC	5 cut(s)	202, 231, 247, 490, 664
Hpy188I	TCNGA	3 cut(s)	387, 564, 590
Hpy188III	TCNNGA	7 cut(s)	14, 365, 509, 673, 779, 890, 912
Hpy8I	GTNNAC	5 cut(s)	202, 231, 247, 490, 664
HpyAV	CCTTC	2 cut(s)	80, 87
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	3 cut(s)	243, 445, 879
HpyCH4V	TGCA	8 cut(s)	123, 178, 185, 276, 404, 547, 746, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 553, 769
HpyF3I	CTNAG	3 cut(s)	15, 265, 375
HpySE526I	ACGT	3 cut(s)	243, 445, 879
Hsp92II	CATG	5 cut(s)	200, 276, 311, 368, 782
Kzo9I	GATC	1 cut(s)	578
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	3 cut(s)	414, 565, 733
MaeI	CTAG	2 cut(s)	708, 920
MaeII	ACGT	3 cut(s)	243, 445, 879
MaeIII	GTNAC	2 cut(s)	215, 280
MalI	GATC	1 cut(s)	580
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	1 cut(s)	578
MboII	GAAGA	8 cut(s)	140, 374, 551, 691, 871, 874, 895, 942
MflI	RGATCY	1 cut(s)	578
MluCI	AATT	5 cut(s)	58, 139, 527, 714, 955
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	7 cut(s)	361, 470, 601, 613, 643, 681, 841
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	3 cut(s)	99, 753, 967
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	410, 553, 769
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	1 cut(s)	578
NlaIII	CATG	5 cut(s)	200, 276, 311, 368, 782
NlaIV	GGNNCC	3 cut(s)	496, 580, 830
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	276
PaeI	GCATGC	1 cut(s)	276
PagI	TCATGA	2 cut(s)	364, 778
PceI	AGGCCT	1 cut(s)	772
PctI	GAATGC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	520, 886
Pfl23II	CGTACG	1 cut(s)	438
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	880
PshAI	GACNNNNGTC	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	92
PspLI	CGTACG	1 cut(s)	438
PspN4I	GGNNCC	3 cut(s)	496, 580, 830
PspPI	GGNCC	3 cut(s)	31, 494, 828
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	578
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	3 cut(s)	20, 440, 878
RsaNI	GTAC	3 cut(s)	19, 439, 877
RseI	CAYNNNNRTG	1 cut(s)	645
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	99, 753, 967
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	578
Sau96I	GGNCC	3 cut(s)	31, 494, 828
SchI	GAGTC	1 cut(s)	167
SfaNI	GCATC	3 cut(s)	414, 565, 733
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	31, 828
SmiMI	CAYNNNNRTG	1 cut(s)	645
SpeI	ACTAGT	1 cut(s)	919
SphI	GCATGC	1 cut(s)	276
Sse9I	AATT	5 cut(s)	58, 139, 527, 714, 955
SseBI	AGGCCT	1 cut(s)	772
SsiI	CCGC	2 cut(s)	4, 419
SspMI	CTAG	2 cut(s)	708, 920
StuI	AGGCCT	1 cut(s)	772
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	3 cut(s)	246, 448, 882
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	58, 139, 527, 714, 955
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	520, 886
Tru1I	TTAA	3 cut(s)	99, 753, 967
Tru9I	TTAA	3 cut(s)	99, 753, 967
TscAI	CASTG	2 cut(s)	130, 289
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	6 cut(s)	75, 292, 296, 438, 767, 784
TspGWI	ACGGA	2 cut(s)	264, 456
TspRI	CASTG	2 cut(s)	130, 289
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	31, 828
XapI	RAATTY	4 cut(s)	58, 527, 714, 955
XceI	RCATGY	1 cut(s)	276
XmiI	GTMKAC	3 cut(s)	201, 246, 663
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	2 cut(s)	708, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.