Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0024665

Physical Location & Seq

Genomic Coordinates Forward (+)

5825101 .. 5828104

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTTCCTCCTCCATCAAGGTCATCTCCTCCTCCGCCTTCACCGCCTCACCGACACTGTCTCAAGTCCCGCCACCACCATCCAAACCCTACCTCCTTTCCTTCCTCCACACCACCTCCAACCCCATATCCTTAAAACTCTCCCATTCCCATAATTTGCGTTCCCATTCTTTTCTCATAACCAACGTTCTAAAAACAGCTGAGTCATTATCCGACACATACGTTTCAAAGTCCTCCCAGCTTCCCAAGCAGCCGTCTTCAGATTCAACTCCGACCATCCTGGTCTCCGAAAAACTTGGAGAAGCCGGTCTCCAAGTCCTACGTGGCTTTGGCAACTTGGAGTGCGCGTATGACCTCTCCCCTGAGGAGCTCTGCGCCAAGATCTCGACATGCGACGCGTTGATCGTTCGGAGTGGAACGAAGGTGACCAGGCAGGTGTTTGAGGCGGCCAAAGGGAGGTTGAAGGTGGTGGGGAGAGCTGGCGTGGGGATAGACAATGTGGATCTGCAGGCGGCCACAGAATTTGGATGTCTGGTCGTTAATGCGCCCACGGCAAACACCGTGGCCGCCGCAGAGCACGGGATTGCGCTGCTCACTGCCATGTCACGAAATGTTGCGCAAGCTGATGCTTCCATCAAAGCTGGAAAGTGGCAACGAAACAAGTACATTGGCGTCTCTCTGGTTGGGAAAACATTGGCAGTTATGGGATTTGGAAAAGTTGGATCCGAAGTTGCTAGACGTGCGAAAGGCTTGGGAATGCATGTTATTTCACATCGATCCTTATGCACCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

265

Amino Acids

27.75

Weight (kDa)

9.6

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024665)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g07660 pycom17g13700
rosa_multiflora	Rmu_co8216346.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc16I	TGCGCA	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	424
AccII	CGCG	2 cut(s)	347, 398
AciI	CCGC	7 cut(s)	36, 45, 71, 446, 512, 567, 570
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	4 cut(s)	510, 717, 730, 771
AcoI	YGGCCR	3 cut(s)	447, 513, 564
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	1 cut(s)	665
AfiI	CCNNNNNNNGG	1 cut(s)	456
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	3 cut(s)	228, 267, 463
AjiI	CACGTC	1 cut(s)	740
AjnI	CCWGG	2 cut(s)	279, 428
AluBI	AGCT	6 cut(s)	200, 241, 370, 479, 623, 641
AluI	AGCT	6 cut(s)	200, 241, 370, 479, 623, 641
Alw21I	GWGCWC	2 cut(s)	372, 579
Alw26I	GTCTC	4 cut(s)	66, 289, 314, 679
AlwI	GGATC	4 cut(s)	510, 717, 730, 771
AoxI	GGCC	3 cut(s)	447, 513, 564
ApeKI	GCWGC	2 cut(s)	250, 589
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	5 cut(s)	347, 377, 547, 589, 619
AsuHPI	GGTGA	3 cut(s)	34, 42, 436
AxyI	CCTNAGG	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	372, 579
BbvI	GCAGC	2 cut(s)	262, 576
BccI	CCATC	4 cut(s)	23, 88, 284, 641
BceAI	ACGGC	2 cut(s)	238, 567
BcgI	CGANNNNNNTGC	1 cut(s)	765
BciT130I	CCWGG	2 cut(s)	281, 430
BcoDI	GTCTC	4 cut(s)	66, 289, 314, 679
BfaI	CTAG	1 cut(s)	735
BfmI	CTRYAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	6 cut(s)	251, 447, 513, 567, 570, 590
BlsI	GCNGC	6 cut(s)	252, 448, 514, 568, 571, 591
Bme1390I	CCNGG	2 cut(s)	281, 430
BmgBI	CACGTC	1 cut(s)	740
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	2 cut(s)	281, 430
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	775
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	672
BsaI	GGTCTC	2 cut(s)	289, 314
BsaJI	CCNNGG	2 cut(s)	549, 561
BsaXI	ACNNNNNCTCC	6 cut(s)	78, 101, 108, 131, 332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse118I	RCCGGY	2 cut(s)	305, 788
Bse21I	CCTNAGG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	281, 430
BseCI	ATCGAT	1 cut(s)	775
BseDI	CCNNGG	2 cut(s)	549, 561
BseGI	GGATG	3 cut(s)	80, 276, 533
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	192, 354
BseRI	GAGGAG	3 cut(s)	19, 22, 380
BseXI	GCAGC	2 cut(s)	262, 576
BseYI	CCCAGC	1 cut(s)	237
Bsh1236I	CGCG	2 cut(s)	347, 398
BshFI	GGCC	3 cut(s)	449, 515, 566
BshVI	ATCGAT	1 cut(s)	775
BsiHKAI	GWGCWC	2 cut(s)	372, 579
BsiSI	CCGG	2 cut(s)	306, 789
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	4 cut(s)	66, 289, 314, 679
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	762
BsnI	GGCC	3 cut(s)	449, 515, 566
Bso31I	GGTCTC	2 cut(s)	289, 314
Bsp1286I	GDGCHC	2 cut(s)	372, 579
Bsp143I	GATC	5 cut(s)	381, 402, 502, 722, 776
BspACI	CCGC	7 cut(s)	36, 45, 71, 446, 512, 567, 570
BspANI	GGCC	3 cut(s)	449, 515, 566
BspCNI	CTCAG	2 cut(s)	193, 355
BspDI	ATCGAT	1 cut(s)	775
BspFNI	CGCG	2 cut(s)	347, 398
BspLI	GGNNCC	1 cut(s)	724
BspMAI	CTGCAG	1 cut(s)	510
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	4 cut(s)	510, 717, 730, 771
BspTNI	GGTCTC	2 cut(s)	289, 314
BsrFI	RCCGGY	2 cut(s)	305, 788
BssAI	RCCGGY	2 cut(s)	305, 788
BssECI	CCNNGG	2 cut(s)	549, 561
BssMI	GATC	5 cut(s)	381, 402, 502, 722, 776
BssNI	GRCGYC	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	281, 430
Bst4CI	ACNGT	2 cut(s)	60, 562
BstACI	GRCGYC	1 cut(s)	672
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	481, 510, 621
BstDEI	CTNAG	2 cut(s)	201, 363
BstDSI	CCRYGG	2 cut(s)	549, 561
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	3 cut(s)	80, 276, 533
BstFNI	CGCG	2 cut(s)	347, 398
BstHHI	GCGC	5 cut(s)	347, 377, 547, 589, 619
BstKTI	GATC	5 cut(s)	384, 405, 505, 725, 779
BstMAI	GTCTC	4 cut(s)	66, 289, 314, 679
BstMBI	GATC	5 cut(s)	381, 402, 502, 722, 776
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 247, 551, 740
BstNI	CCWGG	2 cut(s)	281, 430
BstNSI	RCATGY	2 cut(s)	393, 764
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	279, 428
BstSFI	CTRYAG	1 cut(s)	506
BstUI	CGCG	2 cut(s)	347, 398
BstV1I	GCAGC	2 cut(s)	262, 576
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	3 cut(s)	381, 502, 722
BstYI	RGATCY	3 cut(s)	381, 502, 722
Bsu15I	ATCGAT	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	449, 515, 566
BsuTUI	ATCGAT	1 cut(s)	775
BtgI	CCRYGG	2 cut(s)	549, 561
BtrI	CACGTC	1 cut(s)	740
BtsCI	GGATG	3 cut(s)	80, 276, 533
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	2 cut(s)	56, 594
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	3 cut(s)	481, 510, 621
CfoI	GCGC	5 cut(s)	347, 377, 547, 589, 619
Cfr10I	RCCGGY	2 cut(s)	305, 788
ClaI	ATCGAT	1 cut(s)	775
CseI	GACGC	2 cut(s)	404, 661
Csp6I	GTAC	1 cut(s)	664
CspCI	CAANNNNNGTGG	4 cut(s)	505, 540, 543, 578
CviAII	CATG	3 cut(s)	390, 601, 761
CviQI	GTAC	1 cut(s)	664
DdeI	CTNAG	2 cut(s)	201, 363
DpnI	GATC	5 cut(s)	383, 404, 504, 724, 778
DpnII	GATC	5 cut(s)	381, 402, 502, 722, 776
EaeI	YGGCCR	3 cut(s)	447, 513, 564
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	372
Eco31I	GGTCTC	2 cut(s)	289, 314
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	363
Eco91I	GGTNACC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	279, 428
EcoT22I	ATGCAT	1 cut(s)	762
EcoT38I	GRGCYC	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	3 cut(s)	393, 604, 764
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	389, 600, 760
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	6 cut(s)	251, 447, 513, 567, 570, 590
FokI	GGATG	3 cut(s)	67, 263, 540
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	6 cut(s)	251, 447, 513, 567, 570, 590
FspBI	CTAG	1 cut(s)	735
FspI	TGCGCA	1 cut(s)	618
GlaI	GCGC	5 cut(s)	346, 376, 546, 588, 618
GluI	GCNGC	6 cut(s)	251, 447, 513, 567, 570, 590
GsaI	CCCAGC	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	449, 515, 566
HapII	CCGG	2 cut(s)	306, 789
HgaI	GACGC	2 cut(s)	404, 661
HhaI	GCGC	5 cut(s)	347, 377, 547, 589, 619
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	3 cut(s)	393, 604, 764
Hin6I	GCGC	5 cut(s)	345, 375, 545, 587, 617
HinP1I	GCGC	5 cut(s)	345, 375, 545, 587, 617
HinfI	GANTC	2 cut(s)	203, 263
HpaII	CCGG	2 cut(s)	306, 789
HphI	GGTGA	3 cut(s)	34, 42, 436
Hpy188I	TCNGA	6 cut(s)	214, 262, 273, 289, 411, 727
Hpy188III	TCNNGA	2 cut(s)	385, 606
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	4 cut(s)	49, 112, 415, 457
HpyCH4III	ACNGT	2 cut(s)	60, 562
HpyCH4IV	ACGT	4 cut(s)	186, 222, 322, 739
HpyCH4V	TGCA	3 cut(s)	508, 760, 786
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 247, 551, 740
HpyF3I	CTNAG	2 cut(s)	201, 363
HpySE526I	ACGT	4 cut(s)	186, 222, 322, 739
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	3 cut(s)	393, 604, 764
HspAI	GCGC	5 cut(s)	345, 375, 545, 587, 617
Kzo9I	GATC	5 cut(s)	381, 402, 502, 722, 776
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	2 cut(s)	262, 576
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	4 cut(s)	186, 222, 322, 739
MaeIII	GTNAC	2 cut(s)	424, 603
MalI	GATC	5 cut(s)	383, 404, 504, 724, 778
MboI	GATC	5 cut(s)	381, 402, 502, 722, 776
MboII	GAAGA	1 cut(s)	249
MflI	RGATCY	3 cut(s)	381, 502, 722
MhlI	GDGCHC	2 cut(s)	372, 579
MluCI	AATT	2 cut(s)	154, 521
MluI	ACGCGT	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	4 cut(s)	144, 237, 296, 700
Mph1103I	ATGCAT	1 cut(s)	762
MseI	TTAA	2 cut(s)	134, 540
MslI	CAYNNNNRTG	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	2 cut(s)	306, 789
MspR9I	CCNGG	2 cut(s)	281, 430
Mva1269I	GAATGC	1 cut(s)	762
MvaI	CCWGG	2 cut(s)	281, 430
MvnI	CGCG	2 cut(s)	347, 398
MwoI	GCNNNNNNNGC	4 cut(s)	44, 247, 551, 740
NdeII	GATC	5 cut(s)	381, 402, 502, 722, 776
NlaIII	CATG	3 cut(s)	393, 604, 764
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	2 cut(s)	424, 603
NsbI	TGCGCA	1 cut(s)	618
NsiI	ATGCAT	1 cut(s)	762
NspI	RCATGY	2 cut(s)	393, 764
PaqCI	CACCTGC	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	263
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	6 cut(s)	252, 448, 514, 568, 571, 591
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	279, 428
PspEI	GGTNACC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	2 cut(s)	279, 428
PspN4I	GGNNCC	1 cut(s)	724
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	3 cut(s)	381, 502, 722
PsyI	GACNNNGTC	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	665
RsaNI	GTAC	1 cut(s)	664
RseI	CAYNNNNRTG	1 cut(s)	599
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	134, 540
SatI	GCNGC	6 cut(s)	251, 447, 513, 567, 570, 590
Sau3AI	GATC	5 cut(s)	381, 402, 502, 722, 776
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	281, 430
SduI	GDGCHC	2 cut(s)	372, 579
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	154, 521
SsiI	CCGC	7 cut(s)	36, 45, 71, 446, 512, 567, 570
SspMI	CTAG	1 cut(s)	735
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	279, 428
TaaI	ACNGT	2 cut(s)	60, 562
TaiI	ACGT	4 cut(s)	189, 225, 325, 742
TaqI	TCGA	2 cut(s)	386, 775
TasI	AATT	2 cut(s)	154, 521
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	4 cut(s)	449, 515, 569, 572
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	134, 540
Tru9I	TTAA	2 cut(s)	134, 540
TscAI	CASTG	2 cut(s)	63, 601
TseFI	GTSAC	2 cut(s)	424, 603
TseI	GCWGC	2 cut(s)	250, 589
Tsp45I	GTSAC	2 cut(s)	424, 603
TspRI	CASTG	2 cut(s)	63, 601
Tth111I	GACNNNGTC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	2 cut(s)	393, 764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	735
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.