Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8216346.1

Orthogroup ID

OG0024665

Physical Location & Seq

Genomic Coordinates Forward (+)

5 .. 670

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8216346.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggcttcttcttcttctctcaaagccatctccaccttcaccaccccttcaaaaacaccaccacctccctcatcatcatcatcaaaagcttcacttctctcgttcctcaacaacacctcctctccaatctccctaaaactttctcactccattcctcgttcacattttcgtggaaaccattccgctctatctctcgcagtcaccaatgctttgaacaccgtacagtcttcctctccggtgtctacctccggagatcaaacaaagttgccatcctccaacgccaagcctacgatcctggtctccgagaaacttggagaggcgggcctggaggtcctacgcaagttcgggaacctggagtgcgcgtacaacctcacgccggaggagctctgcgccaagatctcagcctgcgacgccctgatcgtccggagcgggacgaaggtcaacaggcaggttttcgaggcgtcgaaggggaggctgaaggtggtgggaagggcaggggttggaatagacaatgtggatctgcaggcggcgacggagtttggatgcctcgtcgttaatgcgccgacagcaaacaccgtcgctgccgcagagcacgggatcgctctgctcacttccatggctagaaatgttgctcaggcagatgcctccatgaaagctggtaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

221

Amino Acids

22.81

Weight (kDa)

9.44

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024665)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g07660 pycom17g13700
rosa_multiflora	Rmu_co8216346.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccBSI	CCGCTC	2 cut(s)	185, 429
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	1 cut(s)	362
AccIII	TCCGGA	2 cut(s)	248, 423
AciI	CCGC	5 cut(s)	183, 320, 429, 527, 585
AclWI	GGATC	3 cut(s)	286, 525, 605
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	2 cut(s)	411, 461
AfaI	GTAC	2 cut(s)	222, 365
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	51, 214
AjnI	CCWGG	3 cut(s)	294, 324, 351
AluBI	AGCT	3 cut(s)	89, 385, 656
AluI	AGCT	3 cut(s)	89, 385, 656
Alw21I	GWGCWC	2 cut(s)	387, 594
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	3 cut(s)	286, 525, 605
Aor13HI	TCCGGA	2 cut(s)	248, 423
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	178
AspLEI	GCGC	3 cut(s)	362, 392, 562
AspS9I	GGNCC	2 cut(s)	322, 331
AsuHPI	GGTGA	2 cut(s)	31, 193
AvaII	GGWCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	387, 594
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	2 cut(s)	35, 277
BciT130I	CCWGG	3 cut(s)	296, 326, 353
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	1 cut(s)	521
BfuAI	ACCTGC	1 cut(s)	439
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	3 cut(s)	528, 582, 585
BlsI	GCNGC	3 cut(s)	529, 583, 586
Bme1390I	CCNGG	3 cut(s)	296, 326, 353
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	322, 331
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	3 cut(s)	296, 326, 353
BmsI	GCATC	2 cut(s)	533, 631
BoxI	GACNNNNGTC	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	2 cut(s)	347, 374
Bpu10I	CCTNAGC	1 cut(s)	633
BsaHI	GRCGYC	2 cut(s)	411, 461
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	615
BsaWI	WCCGGW	3 cut(s)	235, 248, 423
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 106, 131, 136, 347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
BseAI	TCCGGA	2 cut(s)	248, 423
BseBI	CCWGG	3 cut(s)	296, 326, 353
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	2 cut(s)	269, 548
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	414, 647
BseRI	GAGGAG	2 cut(s)	109, 395
BseXI	GCAGC	1 cut(s)	568
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	324
BsiHKAI	GWGCWC	2 cut(s)	387, 594
BsiSI	CCGG	4 cut(s)	236, 249, 377, 424
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	2 cut(s)	387, 594
Bsp13I	TCCGGA	2 cut(s)	248, 423
Bsp143I	GATC	6 cut(s)	253, 291, 396, 417, 517, 597
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	5 cut(s)	183, 320, 429, 527, 585
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	413, 646
BspEI	TCCGGA	2 cut(s)	248, 423
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	3 cut(s)	286, 525, 605
BspTNI	GGTCTC	1 cut(s)	304
BsrBI	CCGCTC	2 cut(s)	185, 429
BssECI	CCNNGG	1 cut(s)	615
BssMI	GATC	6 cut(s)	253, 291, 396, 417, 517, 597
BssNI	GRCGYC	2 cut(s)	411, 461
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	3 cut(s)	296, 326, 353
Bst4CI	ACNGT	3 cut(s)	220, 225, 577
BstACI	GRCGYC	2 cut(s)	411, 461
BstC8I	GCNNGC	3 cut(s)	322, 406, 525
BstDEI	CTNAG	2 cut(s)	400, 633
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	2 cut(s)	269, 548
BstFNI	CGCG	1 cut(s)	362
BstHHI	GCGC	3 cut(s)	362, 392, 562
BstKTI	GATC	6 cut(s)	256, 294, 399, 420, 520, 600
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	6 cut(s)	253, 291, 396, 417, 517, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	382, 410, 566
BstNI	CCWGG	3 cut(s)	296, 326, 353
BstPAI	GACNNNNGTC	1 cut(s)	437
BstSCI	CCNGG	3 cut(s)	294, 324, 351
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	2 cut(s)	396, 517
BstYI	RGATCY	2 cut(s)	396, 517
BsuRI	GGCC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	269, 548
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	322, 406, 525
CfoI	GCGC	3 cut(s)	362, 392, 562
Cfr13I	GGNCC	2 cut(s)	322, 331
CseI	GACGC	2 cut(s)	419, 450
Csp6I	GTAC	2 cut(s)	221, 364
CviAII	CATG	2 cut(s)	616, 649
CviQI	GTAC	2 cut(s)	221, 364
DdeI	CTNAG	2 cut(s)	400, 633
DpnI	GATC	6 cut(s)	255, 293, 398, 419, 519, 599
DpnII	GATC	6 cut(s)	253, 291, 396, 417, 517, 597
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	3 cut(s)	294, 324, 351
EcoT14I	CCWWGG	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	2 cut(s)	619, 652
FaiI	YATR	2 cut(s)	617, 650
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	615, 648
FauI	CCCGC	2 cut(s)	313, 422
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	528, 582, 585
FokI	GGATG	2 cut(s)	256, 555
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	3 cut(s)	528, 582, 585
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	3 cut(s)	361, 391, 561
GluI	GCNGC	3 cut(s)	528, 582, 585
GsuI	CTGGAG	2 cut(s)	347, 374
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	4 cut(s)	236, 249, 377, 424
HgaI	GACGC	2 cut(s)	419, 450
HhaI	GCGC	3 cut(s)	362, 392, 562
Hin1I	GRCGYC	2 cut(s)	411, 461
Hin1II	CATG	2 cut(s)	619, 652
Hin6I	GCGC	3 cut(s)	360, 390, 560
HinP1I	GCGC	3 cut(s)	360, 390, 560
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	87
HpaII	CCGG	4 cut(s)	236, 249, 377, 424
HphI	GGTGA	2 cut(s)	31, 193
Hpy166II	GTNNAC	3 cut(s)	161, 243, 442
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	3 cut(s)	249, 346, 424
Hpy8I	GTNNAC	3 cut(s)	161, 243, 442
Hpy99I	CGWCG	5 cut(s)	413, 466, 535, 554, 581
HpyAV	CCTTC	6 cut(s)	46, 57, 430, 460, 472, 483
HpyCH4III	ACNGT	3 cut(s)	220, 225, 577
HpyCH4V	TGCA	1 cut(s)	523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	382, 410, 566
HpyF3I	CTNAG	2 cut(s)	400, 633
Hsp92I	GRCGYC	2 cut(s)	411, 461
Hsp92II	CATG	2 cut(s)	619, 652
HspAI	GCGC	3 cut(s)	360, 390, 560
Kpn2I	TCCGGA	2 cut(s)	248, 423
Kzo9I	GATC	6 cut(s)	253, 291, 396, 417, 517, 597
LmnI	GCTCC	2 cut(s)	382, 426
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	2 cut(s)	533, 631
MaeI	CTAG	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	6 cut(s)	255, 293, 398, 419, 519, 599
MbiI	CCGCTC	2 cut(s)	185, 429
MboI	GATC	6 cut(s)	253, 291, 396, 417, 517, 597
MboII	GAAGA	3 cut(s)	3, 6, 219
MflI	RGATCY	2 cut(s)	396, 517
MhlI	GDGCHC	2 cut(s)	387, 594
MluCI	AATT	1 cut(s)	661
MmeI	TCCRAC	2 cut(s)	300, 481
MroI	TCCGGA	2 cut(s)	248, 423
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	2 cut(s)	555, 664
MslI	CAYNNNNRTG	2 cut(s)	168, 614
MspI	CCGG	4 cut(s)	236, 249, 377, 424
MspR9I	CCNGG	3 cut(s)	296, 326, 353
MvaI	CCWGG	3 cut(s)	296, 326, 353
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	3 cut(s)	382, 410, 566
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	6 cut(s)	253, 291, 396, 417, 517, 597
NlaIII	CATG	2 cut(s)	619, 652
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	529, 583, 586
PpuMI	RGGWCCY	1 cut(s)	331
PshAI	GACNNNNGTC	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	3 cut(s)	294, 324, 351
PspGI	CCWGG	3 cut(s)	294, 324, 351
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	322, 331
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	396, 517
RsaI	GTAC	2 cut(s)	222, 365
RsaNI	GTAC	2 cut(s)	221, 364
RseI	CAYNNNNRTG	2 cut(s)	168, 614
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	2 cut(s)	555, 664
SatI	GCNGC	3 cut(s)	528, 582, 585
Sau3AI	GATC	6 cut(s)	253, 291, 396, 417, 517, 597
Sau96I	GGNCC	2 cut(s)	322, 331
ScrFI	CCNGG	3 cut(s)	296, 326, 353
SduI	GDGCHC	2 cut(s)	387, 594
SfaNI	GCATC	2 cut(s)	533, 631
SfcI	CTRYAG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	168, 614
Sse9I	AATT	1 cut(s)	661
SsiI	CCGC	5 cut(s)	183, 320, 429, 527, 585
SspMI	CTAG	1 cut(s)	621
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	294, 324, 351
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	3 cut(s)	220, 225, 577
TaqI	TCGA	2 cut(s)	456, 464
TasI	AATT	1 cut(s)	661
TauI	GCSGC	2 cut(s)	530, 587
Tru1I	TTAA	2 cut(s)	555, 664
Tru9I	TTAA	2 cut(s)	555, 664
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.