Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0022548

Physical Location & Seq

Genomic Coordinates Reverse (-)

7791700 .. 7792207

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGAAACACTCAGTCCATCTTGTGTGGTAGACAAATAAAGTGTTCTTGGGGTAGCAAGCCTACTCCAACAGGAACAGTTTCAAACCCACTCCGGCCGCCAGTGGCAGCAGCACCTTTGCCGGGCCTCTCTGCAACTGACCTTTTGGCCTATCAACGGCAACTGGCAATGAGCAAGATGGGTGGTGTCCATTCCCTCATGCATCCTCAGGGACAGCATCCCCTTAAGCAGGCAGCATTGGGAATGGGCACAGCTGGAGCAAGCCAAGCTATATACGACGGTGGATTCCAGAATGTTGCTGCTGCCCAGCAGCTCATGTACTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

110

Amino Acids

11.4

Weight (kDa)

9.63

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022548)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09680
rosa_multiflora	Rmu_sc0001986.1_g000001 Rmu_sc0030037.1_g000001 Rmu_sc0040533.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	31
AciI	CCGC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	95
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	122, 156, 229
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	84
AluBI	AGCT	3 cut(s)	254, 269, 313
AluI	AGCT	3 cut(s)	254, 269, 313
AoxI	GGCC	3 cut(s)	95, 124, 147
ApeKI	GCWGC	6 cut(s)	107, 110, 233, 299, 302, 310
Asp700I	GAANNNNTTC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	123
AxyI	CCTNAGG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	251
BbvI	GCAGC	6 cut(s)	119, 122, 245, 286, 289, 322
BccI	CCATC	2 cut(s)	26, 172
BceAI	ACGGC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	7 cut(s)	98, 108, 111, 234, 300, 303, 311
BlsI	GCNGC	7 cut(s)	99, 109, 112, 235, 301, 304, 312
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	211, 226
BpmI	CTGGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 156, 229
Bse1I	ACTGG	3 cut(s)	101, 168, 325
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	202, 217
BseLI	CCNNNNNNNGG	3 cut(s)	122, 156, 229
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	26, 221
BseNI	ACTGG	3 cut(s)	101, 168, 325
BseSI	GKGCMC	1 cut(s)	251
BseX3I	CGGCCG	1 cut(s)	95
BseXI	GCAGC	6 cut(s)	119, 122, 245, 286, 289, 322
BseYI	CCCAGC	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	3 cut(s)	97, 126, 149
BsiEI	CGRYCG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	94, 122
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	122, 156, 229
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	3 cut(s)	97, 126, 149
Bsp1286I	GDGCHC	1 cut(s)	251
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	3 cut(s)	97, 126, 149
BspCNI	CTCAG	2 cut(s)	25, 220
BspTI	CTTAAG	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	3 cut(s)	101, 168, 325
Bst4CI	ACNGT	2 cut(s)	79, 281
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	59, 231, 262
BstDEI	CTNAG	2 cut(s)	12, 207
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	202, 217
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	6 cut(s)	119, 122, 245, 286, 289, 322
BstZI	CGGCCG	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	97, 126, 149
BtsCI	GGATG	2 cut(s)	202, 217
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	59, 231, 262
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	2 cut(s)	199, 316
CviJI	RGCY	8 cut(s)	61, 97, 126, 149, 254, 264, 269, 313
CviKI_1	RGCY	8 cut(s)	61, 97, 126, 149, 254, 264, 269, 313
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	2 cut(s)	12, 207
EaeI	YGGCCR	1 cut(s)	95
EagI	CGGCCG	1 cut(s)	95
EclXI	CGGCCG	1 cut(s)	95
Eco52I	CGGCCG	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	204
FaeI	CATG	2 cut(s)	202, 319
FaiI	YATR	4 cut(s)	200, 272, 274, 317
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	2 cut(s)	198, 315
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	7 cut(s)	98, 108, 111, 234, 300, 303, 311
FokI	GGATG	2 cut(s)	189, 204
Fsp4HI	GCNGC	7 cut(s)	98, 108, 111, 234, 300, 303, 311
GluI	GCNGC	7 cut(s)	98, 108, 111, 234, 300, 303, 311
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	97, 126, 149
HapII	CCGG	2 cut(s)	94, 122
Hin1II	CATG	2 cut(s)	202, 319
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	2 cut(s)	94, 122
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	281
HpyCH4III	ACNGT	2 cut(s)	79, 281
HpyCH4V	TGCA	2 cut(s)	134, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	12, 207
Hsp92II	CATG	2 cut(s)	202, 319
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	6 cut(s)	119, 122, 245, 286, 289, 322
LweI	GCATC	2 cut(s)	211, 226
MhlI	GDGCHC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	137, 206, 216
Mph1103I	ATGCAT	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	79
MseI	TTAA	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	2 cut(s)	94, 122
MspR9I	CCNGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	123
NlaIII	CATG	2 cut(s)	202, 319
NsiI	ATGCAT	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	7 cut(s)	99, 109, 112, 235, 301, 304, 312
PspFI	CCCAGC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	7 cut(s)	98, 108, 111, 234, 300, 303, 311
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	5 cut(s)	118, 144, 256, 271, 315
SfaNI	GCATC	2 cut(s)	211, 226
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	79, 281
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	6 cut(s)	107, 110, 233, 299, 302, 310
TspRI	CASTG	1 cut(s)	108
Vha464I	CTTAAG	1 cut(s)	224
XagI	CCTNNNNNAGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.