Rmu_sc0040533.1_g000001

Oligouridylate-binding protein 1B-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040533.1
Physical Location & Seq
Reverse (-)
2 .. 491
490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040533.1_g000001.1.cds

Sequence Viewer

Length: 233 bp
atgtgcagctgcatcagccatgtgctgttgctgcctgaccgaagacctcatagtaagtggcttgccagtagacagatacgttgcaactgggcaacaaaaggtgctggcaccaatgaggataagcagagttcagatgccaagagtgtggtggaactaacaaatggttcctcagaagacggaaaagaggcaactaacaatgaggctccggagaacaacccccaatataccactgt

Protein Analysis

78

Amino Acids

8.57

Weight (kDa)

6.05

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0022548)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 70
AccIII TCCGGA 1 cut(s) 205
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Aor13HI TCCGGA 1 cut(s) 205
ApeKI GCWGC 3 cut(s) 6, 9, 31
BanI GGYRCC 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 49, 180
BbvI GCAGC 2 cut(s) 18, 18
BisI GCNGC 3 cut(s) 7, 10, 32
BlsI GCNGC 3 cut(s) 8, 11, 33
BmiI GGNNCC 3 cut(s) 109, 166, 204
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 21, 124
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 2 cut(s) 49, 180
BsaWI WCCGGW 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 66, 92
BseAI TCCGGA 1 cut(s) 205
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 66, 92
BseXI GCAGC 2 cut(s) 18, 18
BsgI GTGCAG 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 206
Bsp13I TCCGGA 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 182
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 109, 166, 204
BspT107I GGYRCC 1 cut(s) 107
BsrI ACTGG 2 cut(s) 66, 92
Bst4CI ACNGT 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 63, 106
BstDEI CTNAG 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 15, 31
BstV1I GCAGC 2 cut(s) 18, 18
BstV2I GAAGAC 2 cut(s) 49, 180
BstXI CCANNNNNNTGG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 63, 106
CviAII CATG 1 cut(s) 20
CviJI RGCY 4 cut(s) 9, 18, 61, 203
CviKI_1 RGCY 4 cut(s) 9, 18, 61, 203
DdeI CTNAG 1 cut(s) 169
FaeI CATG 1 cut(s) 23
FaiI YATR 3 cut(s) 21, 51, 225
FatI CATG 1 cut(s) 19
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 3 cut(s) 7, 10, 32
Fsp4HI GCNGC 3 cut(s) 7, 10, 32
GluI GCNGC 3 cut(s) 7, 10, 32
HapII CCGG 1 cut(s) 206
Hin1II CATG 1 cut(s) 23
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 2 cut(s) 133, 172
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 6, 12, 84
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 31
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 205
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 48, 73, 79, 90, 219
Lsp1109I GCAGC 2 cut(s) 18, 18
LweI GCATC 2 cut(s) 21, 124
MaeII ACGT 1 cut(s) 79
MboII GAAGA 2 cut(s) 54, 185
MnlI CCTC 5 cut(s) 57, 109, 178, 178, 193
MroI TCCGGA 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 15, 31
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 3 cut(s) 109, 166, 204
PkrI GCNGC 3 cut(s) 8, 11, 33
PspN4I GGNNCC 3 cut(s) 109, 166, 204
PvuII CAGCTG 1 cut(s) 9
SatI GCNGC 3 cut(s) 7, 10, 32
SetI ASST 4 cut(s) 11, 49, 82, 103
SfaNI GCATC 2 cut(s) 21, 124
SgeI CNNG 8 cut(s) 32, 47, 74, 78, 100, 117, 151, 218
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 82
TaqII GACCGA 1 cut(s) 54
TseI GCWGC 3 cut(s) 6, 9, 31
TspGWI ACGGA 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.