Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030037.1

Orthogroup ID

OG0022548

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3628

Gene Structure 3628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030037.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

gtcactcagcttgatcttcatcgtcactttcacactcttggtgttggagtaattgaagaagttcggcttcagcgtgataagggttttgggtttgtcaggttcaatacccatgctgaggcagctctggctatacagatgggaaattctcagtcgaatttgtgtggaagacaaataaagtgctcttggggcagcaagcctactccaccaggaacagtctcaaacccactccctcctcctgctgcagcagtgcctatcccgggcctctctgcaagcgacctcctgacctatgagcggcaactagcaatgagcaagatgggcggtgtccatgcccttatgcacccccagggacagatccctcttaagcagggggcaatgggaatgggcactgctggagcaagccaggctatatatgatggtggattccagaatgttgctgctgcccagcagctcatgtactaccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

154

Amino Acids

16.41

Weight (kDa)

9.07

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022548)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09680
rosa_multiflora	Rmu_sc0001986.1_g000001 Rmu_sc0030037.1_g000001 Rmu_sc0040533.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	292
AciI	CCGC	2 cut(s)	292, 318
AclWI	GGATC	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	142, 154
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	3 cut(s)	115, 257, 291
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	56, 103
AjnI	CCWGG	3 cut(s)	205, 342, 399
AluBI	AGCT	3 cut(s)	10, 122, 448
AluI	AGCT	3 cut(s)	10, 122, 448
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	7 cut(s)	119, 189, 239, 242, 434, 437, 445
ApoI	RAATTY	2 cut(s)	142, 154
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	2 cut(s)	257, 258
AvaI	CYCGRG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	7 cut(s)	131, 201, 226, 254, 421, 424, 457
BccI	CCATC	3 cut(s)	130, 307, 407
BciT130I	CCWGG	3 cut(s)	207, 344, 401
BcnI	CCSGG	2 cut(s)	257, 258
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	8 cut(s)	120, 190, 240, 243, 293, 435, 438, 446
BlsI	GCNGC	8 cut(s)	121, 191, 241, 244, 294, 436, 439, 447
Bme1390I	CCNGG	5 cut(s)	207, 257, 258, 344, 401
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	5 cut(s)	207, 257, 258, 344, 401
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	257, 258
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	256, 342, 343
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 257, 291
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	2 cut(s)	309, 378
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	3 cut(s)	207, 344, 401
BseDI	CCNNGG	3 cut(s)	256, 342, 343
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	115, 257, 291
BseMI	GCAATG	2 cut(s)	309, 378
BseMII	CTCAG	3 cut(s)	20, 105, 161
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	7 cut(s)	131, 201, 226, 254, 421, 424, 457
BseYI	CCCAGC	1 cut(s)	441
BshFI	GGCC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	3 cut(s)	115, 257, 291
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	182, 386
Bsp143I	GATC	2 cut(s)	13, 351
BspACI	CCGC	2 cut(s)	292, 318
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	3 cut(s)	19, 106, 160
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	346
BspTI	CTTAAG	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	292
BsrDI	GCAATG	2 cut(s)	309, 378
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	256, 342, 343
BssMI	GATC	2 cut(s)	13, 351
Bst2UI	CCWGG	3 cut(s)	207, 344, 401
Bst4CI	ACNGT	1 cut(s)	214
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	3 cut(s)	194, 271, 397
BstDEI	CTNAG	3 cut(s)	6, 114, 147
BstKTI	GATC	2 cut(s)	16, 354
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	13, 351
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 125, 186, 315, 401
BstNI	CCWGG	3 cut(s)	207, 344, 401
BstSCI	CCNGG	5 cut(s)	205, 255, 256, 342, 399
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	7 cut(s)	131, 201, 226, 254, 421, 424, 457
BstV2I	GAAGAC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	261
BtsI	GCAGTG	2 cut(s)	252, 384
BtsIMutI	CAGTG	2 cut(s)	252, 384
Cac8I	GCNNGC	3 cut(s)	194, 271, 397
Cfr13I	GGNCC	1 cut(s)	259
Cfr9I	CCCGGG	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	3 cut(s)	110, 326, 451
CviJI	RGCY	9 cut(s)	10, 67, 122, 128, 196, 261, 399, 404, 448
CviKI_1	RGCY	9 cut(s)	10, 67, 122, 128, 196, 261, 399, 404, 448
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	6, 114, 147
DpnI	GATC	2 cut(s)	15, 353
DpnII	GATC	2 cut(s)	13, 351
Eco57I	CTGAAG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	256
EcoRII	CCWGG	3 cut(s)	205, 342, 399
FaeI	CATG	3 cut(s)	113, 329, 454
FaiI	YATR	9 cut(s)	111, 131, 288, 327, 335, 407, 409, 411, 452
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	3 cut(s)	109, 325, 450
Fnu4HI	GCNGC	8 cut(s)	120, 190, 240, 243, 293, 435, 438, 446
Fsp4HI	GCNGC	8 cut(s)	120, 190, 240, 243, 293, 435, 438, 446
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	8 cut(s)	120, 190, 240, 243, 293, 435, 438, 446
GsaI	CCCAGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	3 cut(s)	113, 329, 454
HinfI	GANTC	1 cut(s)	420
HpaII	CCGG	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	280, 424
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	242, 269, 337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 125, 186, 315, 401
HpyF3I	CTNAG	3 cut(s)	6, 114, 147
Hsp92II	CATG	3 cut(s)	113, 329, 454
Kzo9I	GATC	2 cut(s)	13, 351
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	7 cut(s)	131, 201, 226, 254, 421, 424, 457
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	15, 353
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	2 cut(s)	13, 351
MboII	GAAGA	3 cut(s)	8, 68, 177
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	2 cut(s)	182, 386
MluCI	AATT	3 cut(s)	51, 142, 154
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	6 cut(s)	109, 240, 243, 272, 287, 366
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	1 cut(s)	360
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	5 cut(s)	207, 257, 258, 344, 401
MvaI	CCWGG	3 cut(s)	207, 344, 401
MwoI	GCNNNNNNNGC	5 cut(s)	119, 125, 186, 315, 401
NciI	CCSGG	2 cut(s)	257, 258
NdeII	GATC	2 cut(s)	13, 351
NlaIII	CATG	3 cut(s)	113, 329, 454
NmuCI	GTSAC	1 cut(s)	23
PasI	CCCWGGG	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	420
PkrI	GCNGC	8 cut(s)	121, 191, 241, 244, 294, 436, 439, 447
Psp6I	CCWGG	3 cut(s)	205, 342, 399
PspFI	CCCAGC	1 cut(s)	441
PspGI	CCWGG	3 cut(s)	205, 342, 399
PspPI	GGNCC	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	8 cut(s)	120, 190, 240, 243, 293, 435, 438, 446
Sau3AI	GATC	2 cut(s)	13, 351
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	5 cut(s)	207, 257, 258, 344, 401
SduI	GDGCHC	2 cut(s)	182, 386
SetI	ASST	6 cut(s)	12, 101, 124, 279, 287, 450
SfcI	CTRYAG	1 cut(s)	240
SmaI	CCCGGG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	51, 142, 154
SsiI	CCGC	2 cut(s)	292, 318
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	5 cut(s)	205, 255, 256, 342, 399
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	152
TasI	AATT	3 cut(s)	51, 142, 154
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	2 cut(s)	252, 391
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	7 cut(s)	119, 189, 239, 242, 434, 437, 445
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	8
TspMI	CCCGGG	1 cut(s)	256
TspRI	CASTG	2 cut(s)	252, 391
Vha464I	CTTAAG	1 cut(s)	359
XapI	RAATTY	2 cut(s)	142, 154
XmaI	CCCGGG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.