pycom09g09850

phosphatase 2c

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
7976302 .. 7978288
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGCTGCCAAGTTCTACGACTTTTGTGGGGCTGAGGATCCTGAGGCATCCAGCTGCACTACCAGTTTCCATGTTTCGTATAATGCTGATTGATCCATATCAGAATGGGTGCAATCTGAGCACTCCTAAAACTGAAAAGTTCTCCGAAATTTGTGAGAATGGCTGTGTCAGATATGGTTTATCGTCCATGCAAGGATGGCGTACCACACAATGGAGGATGTTATCTTCAATCAGGCTGGCCCCAAATCAAATCCTCTCCCTCACTCTGAGTCGCAGTCGAGTACCTCAAAGAAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.16

Weight (kDa)

10.8

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024426)

Species Orthologous Gene IDs
malus_domestica MD12G1192600.v1.1
pyrus_communis pycom09g09850 pycom11g22040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 210
AclWI GGATC 3 cut(s) 31, 44, 86
AcsI RAATTY 1 cut(s) 147
AfaI GTAC 2 cut(s) 202, 282
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 228
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 122
AlwI GGATC 3 cut(s) 31, 44, 86
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 4, 53
ApoI RAATTY 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 41
BamHI GGATCC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 189
BisI GCNGC 2 cut(s) 5, 54
BlsI GCNGC 2 cut(s) 6, 55
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 38, 240
BmsI GCATC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 62
Bse21I CCTNAGG 1 cut(s) 41
Bse8I GATNNNNATC 1 cut(s) 96
BseGI GGATG 3 cut(s) 46, 200, 222
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 4 cut(s) 23, 32, 107, 257
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 36, 91
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 4 cut(s) 24, 33, 108, 258
BspLI GGNNCC 2 cut(s) 38, 240
BspPI GGATC 3 cut(s) 31, 44, 86
BsrI ACTGG 1 cut(s) 62
BssMI GATC 2 cut(s) 36, 91
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 32, 41, 116, 266
BstF5I GGATG 3 cut(s) 46, 200, 222
BstKTI GATC 2 cut(s) 39, 94
BstMBI GATC 2 cut(s) 36, 91
BstMWI GCNNNNNNNGC 2 cut(s) 117, 196
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 3 cut(s) 46, 200, 222
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 201, 281
CviAII CATG 2 cut(s) 70, 187
CviJI RGCY 5 cut(s) 31, 53, 162, 235, 239
CviKI_1 RGCY 5 cut(s) 31, 53, 162, 235, 239
CviQI GTAC 2 cut(s) 201, 281
DdeI CTNAG 4 cut(s) 32, 41, 116, 266
DpnI GATC 2 cut(s) 38, 93
DpnII GATC 2 cut(s) 36, 91
Eco81I CCTNAGG 1 cut(s) 41
FaeI CATG 2 cut(s) 73, 190
FaiI YATR 5 cut(s) 71, 80, 97, 174, 188
FatI CATG 2 cut(s) 69, 186
Fnu4HI GCNGC 2 cut(s) 5, 54
FokI GGATG 3 cut(s) 33, 207, 229
Fsp4HI GCNGC 2 cut(s) 5, 54
GluI GCNGC 2 cut(s) 5, 54
HaeIII GGCC 1 cut(s) 239
Hin1II CATG 2 cut(s) 73, 190
HinfI GANTC 1 cut(s) 268
Hpy188I TCNGA 5 cut(s) 102, 117, 145, 170, 267
Hpy188III TCNNGA 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 56, 111, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 196
HpyF3I CTNAG 4 cut(s) 32, 41, 116, 266
Hsp92II CATG 2 cut(s) 73, 190
Kzo9I GATC 2 cut(s) 36, 91
LpnPI CCDG 5 cut(s) 53, 63, 75, 217, 221
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 55
MalI GATC 2 cut(s) 38, 93
MboI GATC 2 cut(s) 36, 91
MboII GAAGA 1 cut(s) 216
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 147, 292
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 6 cut(s) 27, 36, 207, 263, 269, 294
MspA1I CMGCKG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 117, 196
NdeII GATC 2 cut(s) 36, 91
NlaIII CATG 2 cut(s) 73, 190
NlaIV GGNNCC 2 cut(s) 38, 240
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 2 cut(s) 6, 55
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 38, 240
PspPI GGNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 202, 282
RsaNI GTAC 2 cut(s) 201, 281
SatI GCNGC 2 cut(s) 5, 54
Sau3AI GATC 2 cut(s) 36, 91
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 277
SduI GDGCHC 1 cut(s) 122
SetI ASST 2 cut(s) 55, 286
SfaNI GCATC 1 cut(s) 55
Sse9I AATT 2 cut(s) 147, 292
TaqI TCGA 1 cut(s) 277
TasI AATT 2 cut(s) 147, 292
TseI GCWGC 2 cut(s) 4, 53
Van91I CCANNNNNTGG 1 cut(s) 210
XapI RAATTY 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.