Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0029366

Physical Location & Seq

Genomic Coordinates Reverse (-)

11548401 .. 11549914

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGAACCCTAAGAACACAATTTCCCAGATTAAGCGCTTGATTGGTAAGCAATTCTCTGATCCTGTGTTGCAGAGGGATATCAAATCATTGCCCTTTGCTGTTTCTGAAGGGCCTGATGGATATCCATTGATTCATGCCCATTATCTGGGAGAAGCAAAGACATTTACACCTACCCAAGTTCTTGGAATGCTGTTTTCCGATCTGAAAATCATAGCCGAGAAGAATCTCAATGCAGCTGTTGTCGATTGCTGTATTGGGATTCCAGTGTATTTCACTGATCTCCAAAGAAGAGCTGTTATGGATGCAGCAAAAATTGCTGGATTGAACCCTCTTCGCTTGTTCCATGAAACTACAGCGACTGCTTTGGCTTACGGTATTTACAAGACGGATTTACCAGAAAATGACCAATTGAATGTTGCCTTTGTTGATATTGGGCATGCTAGCATGCAAGTTTGCATTGCTGGTTTTAAGAAGGGGCAGCTGAAAATATTGGCTCATTCCTTTGACCAGTCTTTGGGAGGTAGGGACTTTGATGAAGTACTGTTCCACCATTTTGCAGCAAAATTCAAGGAAGAGTACAAAATTGATGTTTTACAGAATGCAAGGGCTTGCCTTCGCCTTCGTACCGCTTGTGAGAAGTTGAAGAAGATGCTTAGTGCAAATCCTGTGGTACCTTTGAATATAGAGTGTTTAATGGAAGAGAAGGATGTTAGGGGAATTATTAAGCGGGATGAATTTGAGCAGATTAGTATTCCTATTTTGGAACGTGTGAAGGGACCTTTGGAGAAGGCCCTTCTTGATGCACAGCTTTCAATAGAGGACATTCACACAGTTGAGGTTGTCGGTTCAGGCTCTCGTGTTCCTGCTATAATCAAGATATTGACAGATTTCTTCAAAAAGGAGCCTAGGCGAACTATGAATGCAAGTGAGTGCGTTGCCAGGGTTGTGCTTTGCAATGTGCAATTCTTAGTCCAACATTCAAAGTTAGAGAGTTTCAGGTTAATGAGAGCTTCCCATTTTCAATTTCCTTGTCCTGGAAAGGTTCTGGTCCAGACGCTCAGAACGGAGCAGCTGAGAACAACCAAAATACCCTTGTTTTCCCCAAGGGAAATCCTATCCCAAGTATCAAGGCCCTTACATTTTACAGATCGGGCACTTTTTCAGTTGATGTGCAGTATGCTGATGTTAGTGATTTGCAGGCACCTGCAAAAATCAGCACATATACGATTGGTCCTTTCCAGTCCGTTAAAAGTGAGCGGGCAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

423

Amino Acids

47.5

Weight (kDa)

9.16

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029366)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g13000
rosa_samantha	Rh2BG401200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1212
Acc36I	ACCTGC	1 cut(s)	1212
Acc65I	GGTACC	1 cut(s)	670
AccB1I	GGYRCC	2 cut(s)	670, 1200
AccB7I	CCANNNNNTGG	2 cut(s)	145, 514
AccBSI	CCGCTC	1 cut(s)	1257
AciI	CCGC	3 cut(s)	627, 727, 1257
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	563, 734
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	4 cut(s)	540, 578, 625, 672
AfeI	AGCGCT	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	145, 514, 1034
AflIII	ACRYGT	1 cut(s)	766
AgsI	TTSAA	9 cut(s)	325, 412, 568, 643, 679, 813, 895, 981, 1022
AjnI	CCWGG	2 cut(s)	938, 1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	6 cut(s)	236, 293, 481, 808, 1010, 1072
AluI	AGCT	6 cut(s)	236, 293, 481, 808, 1010, 1072
AlwI	GGATC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	359
Aor51HI	AGCGCT	1 cut(s)	35
AoxI	GGCC	3 cut(s)	110, 789, 1130
ApeKI	GCWGC	5 cut(s)	233, 305, 478, 557, 1069
ApoI	RAATTY	2 cut(s)	563, 734
Asp718I	GGTACC	1 cut(s)	670
AspA2I	CCTAGG	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	6 cut(s)	110, 776, 790, 1048, 1131, 1231
AsuNHI	GCTAGC	1 cut(s)	440
AvaII	GGWCC	3 cut(s)	776, 1048, 1231
AvrII	CCTAGG	1 cut(s)	905
BaeGI	GKGCMC	1 cut(s)	1156
BanI	GGYRCC	2 cut(s)	670, 1200
BauI	CACGAG	1 cut(s)	855
BbvI	GCAGC	5 cut(s)	245, 317, 490, 569, 1081
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	2 cut(s)	940, 1035
BfaI	CTAG	2 cut(s)	441, 906
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	1212
BisI	GCNGC	5 cut(s)	234, 306, 479, 558, 1070
BlnI	CCTAGG	1 cut(s)	905
BlsI	GCNGC	5 cut(s)	235, 307, 480, 559, 1071
BmcAI	AGTACT	1 cut(s)	540
Bme1390I	CCNGG	2 cut(s)	940, 1035
Bme18I	GGWCC	3 cut(s)	776, 1048, 1231
BmgT120I	GGNCC	6 cut(s)	110, 776, 790, 1048, 1131, 1231
BmiI	GGNNCC	4 cut(s)	672, 777, 903, 1202
BmrFI	CCNGG	2 cut(s)	940, 1035
BmsI	GCATC	3 cut(s)	292, 639, 790
BmtI	GCTAGC	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	905, 939, 1103
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 514, 1034
Bse1I	ACTGG	3 cut(s)	263, 508, 1239
Bse3DI	GCAATG	3 cut(s)	86, 456, 961
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	940, 1035
BseDI	CCNNGG	3 cut(s)	905, 939, 1103
BseGI	GGATG	3 cut(s)	307, 712, 736
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	145, 514, 1034
BseMI	GCAATG	3 cut(s)	86, 456, 961
BseMII	CTCAG	2 cut(s)	1064, 1072
BseNI	ACTGG	3 cut(s)	263, 508, 1239
BseSI	GKGCMC	1 cut(s)	1156
BseXI	GCAGC	5 cut(s)	245, 317, 490, 569, 1081
BsgI	GTGCAG	1 cut(s)	1192
BshFI	GGCC	3 cut(s)	112, 791, 1132
BshNI	GGYRCC	2 cut(s)	670, 1200
BslFI	GGGAC	2 cut(s)	539, 789
BslI	CCNNNNNNNGG	3 cut(s)	145, 514, 1034
BsmFI	GGGAC	2 cut(s)	539, 789
BsmI	GAATGC	3 cut(s)	192, 604, 925
BsnI	GGCC	3 cut(s)	112, 791, 1132
Bsp1286I	GDGCHC	1 cut(s)	1156
Bsp143I	GATC	4 cut(s)	58, 199, 277, 1147
BspACI	CCGC	3 cut(s)	627, 727, 1257
BspANI	GGCC	3 cut(s)	112, 791, 1132
BspCNI	CTCAG	2 cut(s)	1065, 1071
BspLI	GGNNCC	4 cut(s)	672, 777, 903, 1202
BspMI	ACCTGC	1 cut(s)	1212
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	283
BspT107I	GGYRCC	2 cut(s)	670, 1200
BsrBI	CCGCTC	1 cut(s)	1257
BsrDI	GCAATG	3 cut(s)	86, 456, 961
BsrI	ACTGG	3 cut(s)	263, 508, 1239
BssECI	CCNNGG	3 cut(s)	905, 939, 1103
BssMI	GATC	4 cut(s)	58, 199, 277, 1147
BssSI	CACGAG	1 cut(s)	855
BssT1I	CCWWGG	2 cut(s)	905, 1103
Bst2BI	CACGAG	1 cut(s)	855
Bst2UI	CCWGG	2 cut(s)	940, 1035
Bst4CI	ACNGT	3 cut(s)	374, 543, 832
Bst6I	CTCTTC	4 cut(s)	283, 336, 567, 693
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	6 cut(s)	438, 442, 446, 610, 1199, 1259
BstDEI	CTNAG	5 cut(s)	9, 653, 967, 1058, 1073
BstF5I	GGATG	3 cut(s)	307, 712, 736
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	4 cut(s)	61, 202, 280, 1150
BstMBI	GATC	4 cut(s)	58, 199, 277, 1147
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	2 cut(s)	940, 1035
BstNSI	RCATGY	2 cut(s)	440, 448
BstSCI	CCNGG	2 cut(s)	938, 1033
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	1156
BstV1I	GCAGC	5 cut(s)	245, 317, 490, 569, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	112, 791, 1132
BtsCI	GGATG	3 cut(s)	307, 712, 736
BtsIMutI	CAGTG	2 cut(s)	270, 273
BveI	ACCTGC	1 cut(s)	1212
Cac8I	GCNNGC	6 cut(s)	438, 442, 446, 610, 1199, 1259
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	6 cut(s)	110, 776, 790, 1048, 1131, 1231
CseI	GACGC	1 cut(s)	1063
Csp6I	GTAC	4 cut(s)	539, 577, 624, 671
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	4 cut(s)	134, 344, 437, 445
CviQI	GTAC	4 cut(s)	539, 577, 624, 671
DdeI	CTNAG	5 cut(s)	9, 653, 967, 1058, 1073
DpnI	GATC	4 cut(s)	60, 201, 279, 1149
DpnII	GATC	4 cut(s)	58, 199, 277, 1147
Eam1104I	CTCTTC	4 cut(s)	283, 336, 567, 693
EarI	CTCTTC	4 cut(s)	283, 336, 567, 693
Eco130I	CCWWGG	2 cut(s)	905, 1103
Eco32I	GATATC	2 cut(s)	79, 122
Eco47I	GGWCC	3 cut(s)	776, 1048, 1231
Eco47III	AGCGCT	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	126
EcoO109I	RGGNCCY	4 cut(s)	110, 776, 790, 1131
EcoRII	CCWGG	2 cut(s)	938, 1033
EcoRV	GATATC	2 cut(s)	79, 122
EcoT14I	CCWWGG	2 cut(s)	905, 1103
ErhI	CCWWGG	2 cut(s)	905, 1103
FaeI	CATG	4 cut(s)	137, 347, 440, 448
FaqI	GGGAC	2 cut(s)	539, 789
FatI	CATG	4 cut(s)	133, 343, 436, 444
FauI	CCCGC	2 cut(s)	720, 1250
Fnu4HI	GCNGC	5 cut(s)	234, 306, 479, 558, 1070
FokI	GGATG	3 cut(s)	314, 719, 743
Fsp4HI	GCNGC	5 cut(s)	234, 306, 479, 558, 1070
FspBI	CTAG	2 cut(s)	441, 906
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	5 cut(s)	234, 306, 479, 558, 1070
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	3 cut(s)	112, 791, 1132
HgaI	GACGC	1 cut(s)	1063
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	137, 347, 440, 448
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	130, 223, 259
Hpy188I	TCNGA	5 cut(s)	58, 106, 199, 204, 1061
Hpy188III	TCNNGA	3 cut(s)	797, 874, 1051
HpyAV	CCTTC	8 cut(s)	101, 466, 623, 629, 697, 766, 781, 803
HpyCH4III	ACNGT	3 cut(s)	374, 543, 832
HpyCH4IV	ACGT	1 cut(s)	766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	5 cut(s)	9, 653, 967, 1058, 1073
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	4 cut(s)	137, 347, 440, 448
HspAI	GCGC	1 cut(s)	34
KpnI	GGTACC	1 cut(s)	674
Kzo9I	GATC	4 cut(s)	58, 199, 277, 1147
LguI	GCTCTTC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	901, 1066
Lsp1109I	GCAGC	5 cut(s)	245, 317, 490, 569, 1081
LweI	GCATC	3 cut(s)	292, 639, 790
MaeI	CTAG	2 cut(s)	441, 906
MaeII	ACGT	1 cut(s)	766
MalI	GATC	4 cut(s)	60, 201, 279, 1149
MbiI	CCGCTC	1 cut(s)	1257
MboI	GATC	4 cut(s)	58, 199, 277, 1147
MboII	GAAGA	8 cut(s)	232, 300, 323, 584, 655, 658, 710, 883
MfeI	CAATTG	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	1156
MmeI	TCCRAC	1 cut(s)	997
MnlI	CCTC	5 cut(s)	66, 339, 512, 811, 829
MseI	TTAA	6 cut(s)	30, 468, 692, 723, 1001, 1247
MspA1I	CMGCKG	3 cut(s)	236, 481, 1072
MspR9I	CCNGG	2 cut(s)	940, 1035
MunI	CAATTG	1 cut(s)	407
Mva1269I	GAATGC	3 cut(s)	192, 604, 925
MvaI	CCWGG	2 cut(s)	940, 1035
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	4 cut(s)	58, 199, 277, 1147
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	4 cut(s)	137, 347, 440, 448
NlaIV	GGNNCC	4 cut(s)	672, 777, 903, 1202
NmeAIII	GCCGAG	1 cut(s)	241
NspI	RCATGY	2 cut(s)	440, 448
PaeI	GCATGC	2 cut(s)	440, 448
PaqCI	CACCTGC	1 cut(s)	1212
PciSI	GCTCTTC	1 cut(s)	283
PctI	GAATGC	3 cut(s)	192, 604, 925
PfeI	GAWTC	3 cut(s)	130, 223, 259
PflMI	CCANNNNNTGG	2 cut(s)	145, 514
PfoI	TCCNGGA	1 cut(s)	1033
PkrI	GCNGC	5 cut(s)	235, 307, 480, 559, 1071
PpuMI	RGGWCCY	1 cut(s)	776
Psp5II	RGGWCCY	1 cut(s)	776
Psp6I	CCWGG	2 cut(s)	938, 1033
PspGI	CCWGG	2 cut(s)	938, 1033
PspN4I	GGNNCC	4 cut(s)	672, 777, 903, 1202
PspPI	GGNCC	6 cut(s)	110, 776, 790, 1048, 1131, 1231
PspPPI	RGGWCCY	1 cut(s)	776
PstNI	CAGNNNCTG	1 cut(s)	359
PvuII	CAGCTG	3 cut(s)	236, 481, 1072
RsaI	GTAC	4 cut(s)	540, 578, 625, 672
RsaNI	GTAC	4 cut(s)	539, 577, 624, 671
SapI	GCTCTTC	1 cut(s)	283
SaqAI	TTAA	6 cut(s)	30, 468, 692, 723, 1001, 1247
SatI	GCNGC	5 cut(s)	234, 306, 479, 558, 1070
Sau3AI	GATC	4 cut(s)	58, 199, 277, 1147
Sau96I	GGNCC	6 cut(s)	110, 776, 790, 1048, 1131, 1231
ScaI	AGTACT	1 cut(s)	540
ScrFI	CCNGG	2 cut(s)	940, 1035
SduI	GDGCHC	1 cut(s)	1156
SfaNI	GCATC	3 cut(s)	292, 639, 790
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	3 cut(s)	776, 1048, 1231
SphI	GCATGC	2 cut(s)	440, 448
SsiI	CCGC	3 cut(s)	627, 727, 1257
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	2 cut(s)	441, 906
StyD4I	CCNGG	2 cut(s)	938, 1033
StyI	CCWWGG	2 cut(s)	905, 1103
TaaI	ACNGT	3 cut(s)	374, 543, 832
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	1 cut(s)	243
TatI	WGTACW	2 cut(s)	538, 576
TfiI	GAWTC	3 cut(s)	130, 223, 259
Tru1I	TTAA	6 cut(s)	30, 468, 692, 723, 1001, 1247
Tru9I	TTAA	6 cut(s)	30, 468, 692, 723, 1001, 1247
TscAI	CASTG	2 cut(s)	270, 280
TseI	GCWGC	5 cut(s)	233, 305, 478, 557, 1069
TspDTI	ATGAA	6 cut(s)	17, 122, 360, 549, 747, 932
TspGWI	ACGGA	3 cut(s)	401, 1079, 1233
TspRI	CASTG	2 cut(s)	270, 280
Van91I	CCANNNNNTGG	2 cut(s)	145, 514
VpaK11BI	GGWCC	3 cut(s)	776, 1048, 1231
XapI	RAATTY	2 cut(s)	563, 734
XceI	RCATGY	2 cut(s)	440, 448
XmaJI	CCTAGG	1 cut(s)	905
XspI	CTAG	2 cut(s)	441, 906
ZrmI	AGTACT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.