pycom09g13310

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0024309
Physical Location & Seq
Forward (+)
11990934 .. 11991361
428 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGGACATATTCCATTCTTCTAACTACAAAAATAAATGGAGCAGTGAGAAAACATCCAACTGGTTAGAAGTTAGAAGTTGCAACCCTTTGTACAAAGCCCTTATATATGCTATTTTCTGGTATCCCTTGAAGTATTTTTCTGCAGCCTCCTATCAGAGAAGAAACGGCATGAATGCACCACCAAGACAAACGATGTCGTGCTGCGATCACGTCCAGCGACGCAAGGAGGAGAAAGGCTGCTTCTATGCTTGCTTGTTCGCGTTGTGCTGCTGTTGTTGCTGCTACGAGACTTGTGAGTCCTGCTTGAGCGGGGTCTGCTGTTGCTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

111

Amino Acids

12.79

Weight (kDa)

8.44

Isoelectric Point (pI)

70.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 72 - 98 8.5e-07 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024309)

Species Orthologous Gene IDs
malus_domestica MD09G1216200.v1.1
prunus_persica Prupe.3G075000_v2.0.a1
pyrus_communis pycom09g13310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 309
AccII CGCG 1 cut(s) 260
AciI CCGC 1 cut(s) 309
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 130
AjiI CACGTC 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 281
ApeKI GCWGC 6 cut(s) 143, 201, 237, 267, 279, 324
BbvI GCAGC 6 cut(s) 155, 188, 224, 254, 266, 311
BceAI ACGGC 1 cut(s) 181
BciVI GTATCC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 132
BisI GCNGC 6 cut(s) 144, 202, 238, 268, 280, 325
BlsI GCNGC 6 cut(s) 145, 203, 239, 269, 281, 326
BmgBI CACGTC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 6 cut(s) 155, 188, 224, 254, 266, 311
Bsh1236I CGCG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 309
BspFNI CGCG 1 cut(s) 260
BspMAI CTGCAG 1 cut(s) 145
BsrBI CCGCTC 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 90
BsrI ACTGG 1 cut(s) 65
BssMI GATC 1 cut(s) 205
BstAUI TGTACA 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 53
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 276, 315, 324
BstSFI CTRYAG 1 cut(s) 141
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 6 cut(s) 155, 188, 224, 254, 266, 311
BsuI GTATCC 1 cut(s) 132
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 250
CseI GACGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 169
CviJI RGCY 3 cut(s) 98, 146, 237
CviKI_1 RGCY 3 cut(s) 98, 146, 237
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
FaeI CATG 1 cut(s) 172
FaiI YATR 6 cut(s) 8, 104, 106, 108, 170, 246
FatI CATG 1 cut(s) 168
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 6 cut(s) 144, 202, 238, 268, 280, 325
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 6 cut(s) 144, 202, 238, 268, 280, 325
GluI GCNGC 6 cut(s) 144, 202, 238, 268, 280, 325
HgaI GACGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 172
HinfI GANTC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 222
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 81, 143, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 315, 324
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 46, 103, 227, 313
Lsp1109I GCAGC 6 cut(s) 155, 188, 224, 254, 266, 311
MaeII ACGT 1 cut(s) 210
MalI GATC 1 cut(s) 207
MbiI CCGCTC 1 cut(s) 309
MboI GATC 1 cut(s) 205
MboII GAAGA 2 cut(s) 9, 171
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 2 cut(s) 157, 220
Mva1269I GAATGC 1 cut(s) 178
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 276, 315, 324
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 172
PctI GAATGC 1 cut(s) 178
PkrI GCNGC 6 cut(s) 145, 203, 239, 269, 281, 326
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PstI CTGCAG 1 cut(s) 145
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SatI GCNGC 6 cut(s) 144, 202, 238, 268, 280, 325
Sau3AI GATC 1 cut(s) 205
SchI GAGTC 1 cut(s) 305
SetI ASST 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
SsiI CCGC 1 cut(s) 309
TaiI ACGT 1 cut(s) 213
TatI WGTACW 1 cut(s) 90
TscAI CASTG 1 cut(s) 49
TseI GCWGC 6 cut(s) 143, 201, 237, 267, 279, 324
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.