Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0029367

Physical Location & Seq

Genomic Coordinates Forward (+)

15219177 .. 15221869

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTGACTCTGTTGCGGTTGAGGAAATTGCCGGTGTTAGGGTATGTCACTGTTGTGAAGAATGAAGAAGGTGGAAACTCAGTAGCTACTGTGGTTCTACGGGCAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCGGTTGATGATGGAGTGAACACTTACAAGGCTATGTGCAAGGATAGCCGTATTGTTCCTGGAGCTGCAGCTACTGAAATTGAGTTAGCTAGAAGGGTGAAGGAATTCTCTTTTAAAGAAACAGGATTGGATCAGTATGCTATAGCAAAGTTTGCCGAAAGTTTTGAGATGGTGCCTAAAACTCTGGCTGAGAATGCTGGGCAGAATGCAATGGAGATCATATCTTCTCTCTATGCTGAACATGCATCAGGAAATACGAAAGCTGGCATTGACTTAGAGGAAGGCCGTTGCAAAGATGTGTCAACTATTAATGTTTGGGACCTCCACATAACTAAGTTCTTTGCTCTCAAATATGCTGCAGATGCTGCCTGCACTGTCCTCAGAGTAGATCAAATTATAATGGCAAAACCAGCAGGTGGCCCAAGTAGGAGAGATCAGCCTGCAGGGATGGATGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032879 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051082 GO:0055044 GO:0061077 GO:0065007 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

200

Amino Acids

21.66

Weight (kDa)

5.09

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029367)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g15370
rosa_samantha	Rh2AG344200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	2 cut(s)	16, 140
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	38, 554
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	196
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	5 cut(s)	86, 203, 209, 227, 401
AluI	AGCT	5 cut(s)	86, 203, 209, 227, 401
AlwI	GGATC	1 cut(s)	276
AlwNI	CAGNNNCTG	2 cut(s)	212, 503
AoxI	GGCC	2 cut(s)	421, 556
ApeKI	GCWGC	4 cut(s)	203, 206, 494, 503
ApoI	RAATTY	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	457, 557
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	310
BbvI	GCAGC	4 cut(s)	190, 218, 481, 490
BccI	CCATC	3 cut(s)	143, 301, 580
BceAI	ACGGC	2 cut(s)	171, 408
BciT130I	CCWGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	4 cut(s)	204, 279, 495, 579
BfuAI	ACCTGC	1 cut(s)	542
BisI	GCNGC	4 cut(s)	204, 207, 495, 504
BlsI	GCNGC	4 cut(s)	205, 208, 496, 505
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	457, 557
BmiI	GGNNCC	2 cut(s)	312, 458
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	392, 490
BpmI	CTGGAG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 554
Bse118I	RCCGGY	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	591, 595
BseLI	CCNNNNNNNGG	2 cut(s)	38, 554
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	93, 318, 532
BseXI	GCAGC	4 cut(s)	190, 218, 481, 490
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	493
BshFI	GGCC	2 cut(s)	423, 558
BshNI	GGYRCC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	38, 554
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	2 cut(s)	337, 349
BsnI	GGCC	2 cut(s)	423, 558
Bsp143I	GATC	4 cut(s)	268, 354, 526, 571
BspACI	CCGC	2 cut(s)	16, 140
BspANI	GGCC	2 cut(s)	423, 558
BspCNI	CTCAG	3 cut(s)	92, 319, 531
BspLI	GGNNCC	2 cut(s)	312, 458
BspMAI	CTGCAG	3 cut(s)	208, 499, 583
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssMI	GATC	4 cut(s)	268, 354, 526, 571
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	3 cut(s)	52, 91, 514
BstAPI	GCANNNNNTGC	2 cut(s)	290, 503
BstC8I	GCNNGC	3 cut(s)	403, 508, 579
BstDEI	CTNAG	5 cut(s)	79, 327, 412, 471, 518
BstF5I	GGATG	2 cut(s)	591, 595
BstKTI	GATC	4 cut(s)	271, 357, 529, 574
BstMBI	GATC	4 cut(s)	268, 354, 526, 571
BstMWI	GCNNNNNNNGC	7 cut(s)	183, 290, 332, 380, 500, 503, 548
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	4 cut(s)	204, 279, 495, 579
BstV1I	GCAGC	4 cut(s)	190, 218, 481, 490
BsuRI	GGCC	2 cut(s)	423, 558
BtsCI	GGATG	2 cut(s)	591, 595
BtsIMutI	CAGTG	2 cut(s)	48, 510
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	3 cut(s)	403, 508, 579
CaiI	CAGNNNCTG	2 cut(s)	212, 503
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	457, 557
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	1 cut(s)	380
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	5 cut(s)	79, 327, 412, 471, 518
DpnI	GATC	4 cut(s)	270, 356, 528, 573
DpnII	GATC	4 cut(s)	268, 354, 526, 571
DraI	TTTAAA	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	385
FaeI	CATG	1 cut(s)	383
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	1 cut(s)	379
Fnu4HI	GCNGC	4 cut(s)	204, 207, 495, 504
Fsp4HI	GCNGC	4 cut(s)	204, 207, 495, 504
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	4 cut(s)	204, 207, 495, 504
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	423, 558
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	157, 441
Hpy188I	TCNGA	1 cut(s)	521
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	2 cut(s)	157, 441
HpyAV	CCTTC	4 cut(s)	62, 225, 232, 413
HpyCH4III	ACNGT	3 cut(s)	52, 91, 514
HpyCH4V	TGCA	8 cut(s)	177, 206, 347, 383, 429, 497, 510, 581
HpyF10VI	GCNNNNNNNGC	7 cut(s)	183, 290, 332, 380, 500, 503, 548
HpyF3I	CTNAG	5 cut(s)	79, 327, 412, 471, 518
Hsp92II	CATG	1 cut(s)	383
Kzo9I	GATC	4 cut(s)	268, 354, 526, 571
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	4 cut(s)	190, 218, 481, 490
LweI	GCATC	2 cut(s)	392, 490
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	4 cut(s)	270, 356, 528, 573
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	4 cut(s)	268, 354, 526, 571
MboII	GAAGA	3 cut(s)	70, 77, 354
MluCI	AATT	4 cut(s)	26, 216, 242, 531
MnlI	CCTC	5 cut(s)	15, 409, 470, 527, 586
Mph1103I	ATGCAT	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	3 cut(s)	252, 447, 598
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	2 cut(s)	337, 349
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	7 cut(s)	183, 290, 332, 380, 500, 503, 548
NdeII	GATC	4 cut(s)	268, 354, 526, 571
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	2 cut(s)	312, 458
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	1 cut(s)	383
OliI	CACNNNNGTG	1 cut(s)	53
PaqCI	CACCTGC	1 cut(s)	542
PctI	GAATGC	2 cut(s)	337, 349
PdmI	GAANNNNTTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	554
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	4 cut(s)	205, 208, 496, 505
PpuMI	RGGWCCY	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	536
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	312, 458
PspPI	GGNCC	2 cut(s)	457, 557
PspPPI	RGGWCCY	1 cut(s)	457
PstI	CTGCAG	3 cut(s)	208, 499, 583
PstNI	CAGNNNCTG	2 cut(s)	212, 503
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	252, 447, 598
SatI	GCNGC	4 cut(s)	204, 207, 495, 504
Sau3AI	GATC	4 cut(s)	268, 354, 526, 571
Sau96I	GGNCC	2 cut(s)	457, 557
SbfI	CCTGCAGG	1 cut(s)	583
ScaI	AGTACT	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	198
SdaI	CCTGCAGG	1 cut(s)	583
SetI	ASST	9 cut(s)	73, 88, 132, 205, 211, 229, 403, 462, 556
SfaNI	GCATC	2 cut(s)	392, 490
SfcI	CTRYAG	4 cut(s)	204, 279, 495, 579
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse8387I	CCTGCAGG	1 cut(s)	583
Sse9I	AATT	4 cut(s)	26, 216, 242, 531
SsiI	CCGC	2 cut(s)	16, 140
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	52, 91, 514
TasI	AATT	4 cut(s)	26, 216, 242, 531
TatI	WGTACW	1 cut(s)	107
Tru1I	TTAA	3 cut(s)	252, 447, 598
Tru9I	TTAA	3 cut(s)	252, 447, 598
TscAI	CASTG	2 cut(s)	55, 517
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	4 cut(s)	203, 206, 494, 503
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	55, 517
Van91I	CCANNNNNTGG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	457
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.