Rh2AG344200
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0029367
Physical Location & Seq
Reverse (-)
50597269 .. 50600269
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG344200.1

Sequence Viewer

Length: 735 bp
ATGGCATTACATTTCTGTGAGCGTTACAAGCTCATGGTGCTGAAAATCAGTTCAAAATTTGAATTGAGACGATTTTGCCGTACAGTTGGTGCTGTTGCTATGTTGAAGCTTTGCCAGCCTAACCCAGATGATCTTGGATATGTTGACTCTGTCTCAGTTGAGGAAATTGCTGGTGTTAGGGTTACTATTGTGAAGAATGAAGAAGGTGGTAACTCTGTATCCACTGTGCTTCTAAGGGCAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTGATGATGGGGTGAACACTTACAAGGCTATGTGCAGGGATAGCCGTATTGTTCCTGGAGCTGCAGCTACTGAAATTGAGTTAGCCAGGAGGGTCAAGGAGTTCTCTTTCAAAGAAACAGGATTGGATCAGTATGCTATAGCAAAATTTGCCCAAAGTTTTGAGATGGTGCCGAAAACTCTTGCTGAAAATGCGGGGCTTAATTCAATGGAGATAATATCTTCCCTATATGCTGAACATGCAGCCGGGAAAACCAAAGTTGGCATTGACTTGGAGGGAGGCCTTTGCAAAGATGTATCAACTTTACAAGTTTGGGACCTTCATGTTACTAAGTTCTTTGCTCTCAAGTATGCTGCAGATGCTGCCTGCACTGTACTACGAGTAGATCAAATTATAATGGCAAAACCAGCAGGTGGCCCGAGGAGGGGGGATCAGCCTGCAGGCATGGATGAGGACTAA

Protein Analysis

244

Amino Acids

26.66

Weight (kDa)

5.39

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 1 - 228 7.4e-70 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029367)

Species Orthologous Gene IDs
pyrus_communis pycom09g15370
rosa_samantha Rh2AG344200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 671
AarI CACCTGC 1 cut(s) 677
Acc36I ACCTGC 1 cut(s) 677
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 689
AciI CCGC 1 cut(s) 470
AclWI GGATC 2 cut(s) 411, 714
AcsI RAATTY 2 cut(s) 56, 422
AfaI GTAC 3 cut(s) 82, 244, 651
AfiI CCNNNNNNNGG 3 cut(s) 689, 700, 701
AgsI TTSAA 6 cut(s) 54, 62, 106, 269, 388, 483
AjnI CCWGG 2 cut(s) 331, 362
AluBI AGCT 4 cut(s) 31, 109, 338, 344
AluI AGCT 4 cut(s) 31, 109, 338, 344
Alw26I GTCTC 2 cut(s) 61, 157
AlwI GGATC 2 cut(s) 411, 714
AlwNI CAGNNNCTG 2 cut(s) 347, 638
Ama87I CYCGRG 1 cut(s) 694
AoxI GGCC 2 cut(s) 556, 691
ApeKI GCWGC 5 cut(s) 338, 341, 518, 629, 638
ApoI RAATTY 2 cut(s) 56, 422
AspS9I GGNCC 2 cut(s) 592, 692
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 694
AvaII GGWCC 1 cut(s) 592
BanI GGYRCC 1 cut(s) 445
BbvI GCAGC 5 cut(s) 325, 353, 530, 616, 625
BccI CCATC 2 cut(s) 278, 436
BceAI ACGGC 2 cut(s) 63, 306
BciT130I CCWGG 2 cut(s) 333, 364
BciVI GTATCC 1 cut(s) 229
BcnI CCSGG 1 cut(s) 523
BcoDI GTCTC 2 cut(s) 61, 157
BfmI CTRYAG 4 cut(s) 339, 414, 630, 714
BfuAI ACCTGC 1 cut(s) 677
BfuI GTATCC 1 cut(s) 229
BisI GCNGC 5 cut(s) 339, 342, 519, 630, 639
BlsI GCNGC 5 cut(s) 340, 343, 520, 631, 640
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 3 cut(s) 333, 364, 523
Bme18I GGWCC 1 cut(s) 592
BmeT110I CYCGRG 1 cut(s) 694
BmgT120I GGNCC 2 cut(s) 592, 692
BmiI GGNNCC 2 cut(s) 447, 593
BmrFI CCNGG 3 cut(s) 333, 364, 523
BmsI GCATC 1 cut(s) 625
BpmI CTGGAG 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 523
BsaJI CCNNGG 1 cut(s) 695
Bsc4I CCNNNNNNNGG 3 cut(s) 689, 700, 701
BseBI CCWGG 2 cut(s) 333, 364
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 1 cut(s) 730
BseLI CCNNNNNNNGG 3 cut(s) 689, 700, 701
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 712
BseXI GCAGC 5 cut(s) 325, 353, 530, 616, 625
BsgI GTGCAG 2 cut(s) 331, 628
BshFI GGCC 2 cut(s) 558, 693
BshNI GGYRCC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 694
BsiSI CCGG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 3 cut(s) 689, 700, 701
BsmAI GTCTC 2 cut(s) 61, 157
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 2 cut(s) 558, 693
BsoBI CYCGRG 1 cut(s) 694
Bsp143I GATC 4 cut(s) 130, 403, 661, 706
BspACI CCGC 1 cut(s) 470
BspANI GGCC 2 cut(s) 558, 693
BspCNI CTCAG 1 cut(s) 167
BspLI GGNNCC 2 cut(s) 447, 593
BspMAI CTGCAG 3 cut(s) 343, 634, 718
BspMI ACCTGC 1 cut(s) 677
BspPI GGATC 2 cut(s) 411, 714
BspT107I GGYRCC 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 4 cut(s) 130, 403, 661, 706
Bst2UI CCWGG 2 cut(s) 333, 364
Bst4CI ACNGT 3 cut(s) 85, 226, 649
BstAPI GCANNNNNTGC 2 cut(s) 425, 638
BstC8I GCNNGC 4 cut(s) 116, 643, 714, 718
BstDEI CTNAG 3 cut(s) 154, 233, 606
BstF5I GGATG 1 cut(s) 730
BstKTI GATC 4 cut(s) 133, 406, 664, 709
BstMAI GTCTC 2 cut(s) 61, 157
BstMBI GATC 4 cut(s) 130, 403, 661, 706
BstNI CCWGG 2 cut(s) 333, 364
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 331, 362, 521
BstSFI CTRYAG 4 cut(s) 339, 414, 630, 714
BstV1I GCAGC 5 cut(s) 325, 353, 530, 616, 625
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 558, 693
BtsCI GGATG 1 cut(s) 730
BtsIMutI CAGTG 2 cut(s) 222, 645
BveI ACCTGC 1 cut(s) 677
Cac8I GCNNGC 4 cut(s) 116, 643, 714, 718
CaiI CAGNNNCTG 2 cut(s) 347, 638
Cfr13I GGNCC 2 cut(s) 592, 692
Csp6I GTAC 3 cut(s) 81, 243, 650
CviAII CATG 4 cut(s) 34, 515, 599, 721
CviQI GTAC 3 cut(s) 81, 243, 650
DdeI CTNAG 3 cut(s) 154, 233, 606
DpnI GATC 4 cut(s) 132, 405, 663, 708
DpnII GATC 4 cut(s) 130, 403, 661, 706
Eco147I AGGCCT 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 592
Eco88I CYCGRG 1 cut(s) 694
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 2 cut(s) 331, 362
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 4 cut(s) 37, 518, 602, 724
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 33, 514, 598, 720
FauI CCCGC 1 cut(s) 463
Fnu4HI GCNGC 5 cut(s) 339, 342, 519, 630, 639
Fsp4HI GCNGC 5 cut(s) 339, 342, 519, 630, 639
GluI GCNGC 5 cut(s) 339, 342, 519, 630, 639
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 2 cut(s) 558, 693
HapII CCGG 1 cut(s) 522
Hin1II CATG 4 cut(s) 37, 518, 602, 724
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 522
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 145, 292
Hpy8I GTNNAC 2 cut(s) 145, 292
HpyAV CCTTC 2 cut(s) 197, 605
HpyCH4III ACNGT 3 cut(s) 85, 226, 649
HpyCH4V TGCA 7 cut(s) 312, 341, 518, 564, 632, 645, 716
HpyF3I CTNAG 3 cut(s) 154, 233, 606
Hsp92II CATG 4 cut(s) 37, 518, 602, 724
Kzo9I GATC 4 cut(s) 130, 403, 661, 706
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 5 cut(s) 325, 353, 530, 616, 625
LweI GCATC 1 cut(s) 625
MaeIII GTNAC 4 cut(s) 23, 181, 209, 601
MalI GATC 4 cut(s) 132, 405, 663, 708
MboI GATC 4 cut(s) 130, 403, 661, 706
MboII GAAGA 3 cut(s) 205, 212, 489
MluCI AATT 7 cut(s) 56, 62, 165, 351, 422, 478, 666
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 7 cut(s) 154, 360, 544, 548, 690, 693, 721
MseI TTAA 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 522
MspR9I CCNGG 3 cut(s) 333, 364, 523
MvaI CCWGG 2 cut(s) 333, 364
NciI CCSGG 1 cut(s) 523
NdeII GATC 4 cut(s) 130, 403, 661, 706
NlaIII CATG 4 cut(s) 37, 518, 602, 724
NlaIV GGNNCC 2 cut(s) 447, 593
NspI RCATGY 1 cut(s) 518
PaqCI CACCTGC 1 cut(s) 677
PceI AGGCCT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 5 cut(s) 340, 343, 520, 631, 640
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 592
PsiI TTATAA 1 cut(s) 671
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 2 cut(s) 331, 362
PspGI CCWGG 2 cut(s) 331, 362
PspN4I GGNNCC 2 cut(s) 447, 593
PspPI GGNCC 2 cut(s) 592, 692
PspPPI RGGWCCY 1 cut(s) 592
PstI CTGCAG 3 cut(s) 343, 634, 718
PstNI CAGNNNCTG 2 cut(s) 347, 638
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 3 cut(s) 82, 244, 651
RsaNI GTAC 3 cut(s) 81, 243, 650
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 5 cut(s) 339, 342, 519, 630, 639
Sau3AI GATC 4 cut(s) 130, 403, 661, 706
Sau96I GGNCC 2 cut(s) 592, 692
SbfI CCTGCAGG 1 cut(s) 718
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 3 cut(s) 333, 364, 523
SdaI CCTGCAGG 1 cut(s) 718
SetI ASST 8 cut(s) 33, 111, 208, 267, 340, 346, 597, 691
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 4 cut(s) 339, 414, 630, 714
SinI GGWCC 1 cut(s) 592
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse8387I CCTGCAGG 1 cut(s) 718
Sse9I AATT 7 cut(s) 56, 62, 165, 351, 422, 478, 666
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 1 cut(s) 470
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 331, 362, 521
TaaI ACNGT 3 cut(s) 85, 226, 649
TasI AATT 7 cut(s) 56, 62, 165, 351, 422, 478, 666
TatI WGTACW 2 cut(s) 242, 649
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 2 cut(s) 229, 652
TseI GCWGC 5 cut(s) 338, 341, 518, 629, 638
TspDTI ATGAA 2 cut(s) 213, 587
TspRI CASTG 2 cut(s) 229, 652
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 592
XapI RAATTY 2 cut(s) 56, 422
XceI RCATGY 1 cut(s) 518
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.