pycom09g17150

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0029368
Physical Location & Seq
Reverse (-)
17576860 .. 17577306
447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17150.1

Sequence Viewer

Length: 447 bp
ATGCCTCGGGAGCACGCGCAGCTGACGGCGGCGAAGAAGTCATACGGGAATGCGAAGGCGGTGGGGAACCACGAGGAGGAGGCCCGGTGGGCAAACGCAATCGGCGACATGTTGAAGAAGAGAGGGGAGTACGTGGCGGCCCTCCAGTGGCTCCGAATCGACTACGATTTGTCTGTCAAGTACTTGCCCCAAAAGCATTGCCTCCCCACCTGTCAGTCCCTCGGCGAGCTCTATCTTCGCCTCGAGTGCTTCAAAGAGGCTCTTATTTATCAGGTATTTTCTCGATTGGGTTCGATTCGTGTGAATTTCAATTCGATTGGAGTCCTTTTTTCCCTGGGAATTTATGTTTATTTTGGTATTAAGAATGTATTGGCAATGGGAAAGTTTTCTGGTTGGTCGCTGAGAAATTTGGGGAAGACTCGGGTGAATCAGTATCCCACTTCTTAA

Protein Analysis

149

Amino Acids

16.84

Weight (kDa)

9.59

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029368)

Species Orthologous Gene IDs
pyrus_communis pycom09g17150 pycom15g12680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 29, 59, 137
AcsI RAATTY 3 cut(s) 304, 339, 406
AfaI GTAC 2 cut(s) 131, 182
AfiI CCNNNNNNNGG 2 cut(s) 76, 147
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 3 cut(s) 115, 253, 310
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 2 cut(s) 22, 229
AluI AGCT 2 cut(s) 22, 229
Alw21I GWGCWC 2 cut(s) 15, 231
Ama87I CYCGRG 3 cut(s) 6, 242, 420
AoxI GGCC 2 cut(s) 81, 138
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 3 cut(s) 304, 339, 406
Asp700I GAANNNNTTC 1 cut(s) 385
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 82, 139
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 436
AvaI CYCGRG 3 cut(s) 6, 242, 420
BanII GRGCYC 1 cut(s) 231
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 2 cut(s) 15, 231
BbvI GCAGC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 335
BciVI GTATCC 1 cut(s) 444
BcnI CCSGG 1 cut(s) 85
BfuI GTATCC 1 cut(s) 444
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 3 cut(s) 20, 30, 138
BlsI GCNGC 3 cut(s) 21, 31, 139
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 2 cut(s) 85, 335
BmeT110I CYCGRG 3 cut(s) 6, 242, 420
BmgT120I GGNCC 2 cut(s) 82, 139
BmiI GGNNCC 2 cut(s) 68, 152
BmrFI CCNGG 2 cut(s) 85, 335
BpiI GAAGAC 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 133
BsaJI CCNNGG 4 cut(s) 5, 220, 333, 334
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 147
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 2 cut(s) 196, 381
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 4 cut(s) 5, 220, 333, 334
BseLI CCNNNNNNNGG 2 cut(s) 76, 147
BseMI GCAATG 2 cut(s) 196, 381
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 2 cut(s) 89, 92
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 83, 140
BsiHKAI GWGCWC 2 cut(s) 15, 231
BsiHKCI CYCGRG 3 cut(s) 6, 242, 420
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 76, 147
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 2 cut(s) 83, 140
BsoBI CYCGRG 3 cut(s) 6, 242, 420
Bsp1286I GDGCHC 2 cut(s) 15, 231
BspACI CCGC 3 cut(s) 29, 59, 137
BspANI GGCC 2 cut(s) 83, 140
BspCNI CTCAG 1 cut(s) 393
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 68, 152
BsrDI GCAATG 2 cut(s) 196, 381
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 4 cut(s) 5, 220, 333, 334
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 15, 227
BstDEI CTNAG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 19
BstMWI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 193, 246
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 83, 333
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 422
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 2 cut(s) 83, 140
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 15, 227
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 82, 139
Csp6I GTAC 2 cut(s) 130, 181
CviAII CATG 1 cut(s) 109
CviJI RGCY 6 cut(s) 22, 83, 140, 151, 229, 260
CviKI_1 RGCY 6 cut(s) 22, 83, 140, 151, 229, 260
CviQI GTAC 2 cut(s) 130, 181
DdeI CTNAG 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 3 cut(s) 6, 242, 420
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 1 cut(s) 112
FaiI YATR 3 cut(s) 43, 110, 345
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 202
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 20, 30, 138
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 20, 30, 138
GlaI GCGC 1 cut(s) 18
GluI GCNGC 3 cut(s) 20, 30, 138
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 83, 140
HapII CCGG 1 cut(s) 85
HhaI GCGC 1 cut(s) 19
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 5 cut(s) 156, 295, 321, 418, 427
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 436
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 8, 282
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 193, 246
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 10, 156
LpnPI CCDG 7 cut(s) 98, 158, 223, 257, 320, 347, 375
Lsp1109I GCAGC 1 cut(s) 31
MaeII ACGT 1 cut(s) 132
MboII GAAGA 5 cut(s) 46, 127, 130, 227, 427
MhlI GDGCHC 2 cut(s) 15, 231
MluCI AATT 4 cut(s) 304, 310, 339, 406
MlyI GAGTC 2 cut(s) 330, 412
MroXI GAANNNNTTC 1 cut(s) 385
MseI TTAA 2 cut(s) 360, 445
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 2 cut(s) 85, 335
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 193, 246
NciI CCSGG 1 cut(s) 85
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 2 cut(s) 68, 152
NmeAIII GCCGAG 1 cut(s) 201
NspI RCATGY 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 242
PasI CCCWGGG 1 cut(s) 334
PciI ACATGT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 385
PfeI GAWTC 3 cut(s) 156, 295, 427
PkrI GCNGC 3 cut(s) 21, 31, 139
PleI GAGTC 2 cut(s) 329, 412
PpsI GAGTC 2 cut(s) 329, 412
Ppu21I YACGTR 1 cut(s) 133
PscI ACATGT 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 68, 152
PspPI GGNCC 2 cut(s) 82, 139
PspXI VCTCGAGB 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 2 cut(s) 131, 182
RsaNI GTAC 2 cut(s) 130, 181
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 360, 445
SatI GCNGC 3 cut(s) 20, 30, 138
Sau96I GGNCC 2 cut(s) 82, 139
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 330, 412
ScrFI CCNGG 2 cut(s) 85, 335
SduI GDGCHC 2 cut(s) 15, 231
SetI ASST 5 cut(s) 24, 135, 212, 231, 276
Sfr274I CTCGAG 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 4 cut(s) 304, 310, 339, 406
SsiI CCGC 3 cut(s) 29, 59, 137
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 83, 333
TaiI ACGT 1 cut(s) 135
TaqI TCGA 5 cut(s) 159, 243, 283, 293, 314
TasI AATT 4 cut(s) 304, 310, 339, 406
TatI WGTACW 1 cut(s) 180
TauI GCSGC 2 cut(s) 32, 140
TfiI GAWTC 3 cut(s) 156, 295, 427
Tru1I TTAA 2 cut(s) 360, 445
Tru9I TTAA 2 cut(s) 360, 445
TscAI CASTG 1 cut(s) 152
TseI GCWGC 1 cut(s) 19
TspRI CASTG 1 cut(s) 152
XapI RAATTY 3 cut(s) 304, 339, 406
XceI RCATGY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 385
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.