pycom09g17570
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0024317
Physical Location & Seq
Forward (+)
18058974 .. 18060828
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 987 bp
ATGTCTAGCAATTTGGCTTGGCTCATTCCCAGCGTCTACAGGAACACACACACGACCTTATCTTCTTCCAATCCGAATGACTTCGTGAGTGAGACCCACCTAAAAAGCCAAAACCACCAGTCCAAGTCAACCTTTTGTAACTCCCACCTCCCTCATCGATCGACTACTATATCTACGCTCATCTTCTGCCATTACCTGGGCCTTTCTCTCCCTCTTCTCCTCTATCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTTGTGCAGAATGAGAAAACCTTGCTGTGAAAAAGAAGGCACAAACAAAGGAGCTTGGTCTAAACAAGAAGACCAAAAACTCATTGATTACATTAAGACTCATGGGGAAGGCTGCTGGCGATCTCTCCCCAAGGCTGCAGGGTTGCACCGGTGTGGCAAAAGTTGCAGGCTAAGATGGATAAACTATTTAAGGCCAGACATCAAACGTGGTAACTTTGAGCAAGATGAAGAAGACCTCATCATCAAACTACATGCCCTCCTTGGCAACCGGTGGTCGCTGATTGCTGGAAGGCTGCCCGGTAGGACGGACAATGAGGTTAAGAACTATTGGAATTCTCACATCCGGAAGAAGCTAATAAAAATGGGTATTGATCCAAATAACCATAGGCTAAACCAGATTATTCCTCGTCCAAATCCGCAAAACGATTGCGTTTCACCTGCTGCAACATCATCTGGGTCAATGAGCAATATTAATGCATGTACTAAAATACCATTGAAATCCTCAGATGATCAAATTGATCATAAGGCCTCGGAAGCTGCGAGTGTTCTTGAAGATGAAACATCTGGTCCATCACCTCGTGACTTGAATCTTGATCTCACCATTGCATTTCCTGAACCTTCACTTCACGTTGAGGAAGGGATGCCAAAGCTTATCAAGGGGTCGAACACTACTGCTAGAGAAATCGAAACAAAACTCCAGCATTTGCCTACCCTTGTGCTTTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

329

Amino Acids

36.98

Weight (kDa)

9.03

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 102 - 149 2.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 105 - 163 4.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 155 - 199 9.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 159 - 203 5.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024317)

Species Orthologous Gene IDs
malus_domestica MD09G1261200.v1.1
prunus_persica Prupe.3G158700_v2.0.a1
pyrus_communis pycom09g17570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 703
Acc36I ACCTGC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 196
AccI GTMKAC 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 600
AciI CCGC 1 cut(s) 674
AclWI GGATC 1 cut(s) 623
AcsI RAATTY 1 cut(s) 589
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 1 cut(s) 739
AfiI CCNNNNNNNGG 1 cut(s) 196
AgeI ACCGGT 2 cut(s) 405, 525
AgsI TTSAA 3 cut(s) 754, 809, 844
AjnI CCWGG 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 408
AluBI AGCT 4 cut(s) 311, 610, 794, 907
AluI AGCT 4 cut(s) 311, 610, 794, 907
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 623
Aor13HI TCCGGA 1 cut(s) 600
AoxI GGCC 3 cut(s) 199, 449, 783
ApeKI GCWGC 5 cut(s) 369, 392, 550, 698, 794
ApoI RAATTY 1 cut(s) 589
AseI ATTAAT 1 cut(s) 729
AsiGI ACCGGT 2 cut(s) 405, 525
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 199, 824
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 3 cut(s) 684, 822, 847
AvaII GGWCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 834
BbsI GAAGAC 2 cut(s) 333, 495
BbvI GCAGC 5 cut(s) 356, 379, 537, 685, 781
BccI CCATC 2 cut(s) 426, 835
BciT130I CCWGG 1 cut(s) 197
BclI TGATCA 2 cut(s) 766, 775
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 2 cut(s) 6, 933
BfmI CTRYAG 2 cut(s) 37, 393
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 5 cut(s) 370, 393, 551, 699, 795
BlsI GCNGC 5 cut(s) 371, 394, 552, 700, 796
Bme1390I CCNGG 2 cut(s) 197, 555
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 2 cut(s) 199, 824
BmrFI CCNGG 2 cut(s) 197, 555
BmsI GCATC 1 cut(s) 888
BpiI GAAGAC 2 cut(s) 333, 495
BpmI CTGGAG 1 cut(s) 938
BpuMI CCSGG 1 cut(s) 555
Bsa29I ATCGAT 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 4 cut(s) 196, 387, 517, 786
BsaWI WCCGGW 3 cut(s) 405, 525, 600
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 2 cut(s) 405, 525
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 858
BseAI TCCGGA 1 cut(s) 600
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 4 cut(s) 196, 387, 517, 786
BseGI GGATG 2 cut(s) 597, 903
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 1 cut(s) 774
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 5 cut(s) 356, 379, 537, 685, 781
BseYI CCCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 283
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 3 cut(s) 201, 451, 785
BshTI ACCGGT 2 cut(s) 405, 525
BshVI ATCGAT 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 161
BsiSI CCGG 4 cut(s) 406, 526, 555, 601
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 3 cut(s) 201, 451, 785
Bso31I GGTCTC 1 cut(s) 86
Bsp13I TCCGGA 1 cut(s) 600
Bsp143I GATC 6 cut(s) 158, 377, 628, 766, 775, 850
BspACI CCGC 1 cut(s) 674
BspANI GGCC 3 cut(s) 201, 451, 785
BspCNI CTCAG 1 cut(s) 773
BspDI ATCGAT 1 cut(s) 157
BspEI TCCGGA 1 cut(s) 600
BspMAI CTGCAG 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 858
BsrFI RCCGGY 2 cut(s) 405, 525
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 2 cut(s) 405, 525
BssECI CCNNGG 4 cut(s) 196, 387, 517, 786
BssMI GATC 6 cut(s) 158, 377, 628, 766, 775, 850
BssSI CACGAG 1 cut(s) 834
BssT1I CCWWGG 2 cut(s) 387, 517
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 374, 425
BstDEI CTNAG 2 cut(s) 428, 760
BstF5I GGATG 2 cut(s) 597, 903
BstKTI GATC 6 cut(s) 161, 380, 631, 769, 778, 853
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 6 cut(s) 158, 377, 628, 766, 775, 850
BstMCI CGRYCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 420, 791
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 2 cut(s) 512, 738
BstSCI CCNGG 2 cut(s) 195, 553
BstSFI CTRYAG 2 cut(s) 37, 393
BstV1I GCAGC 5 cut(s) 356, 379, 537, 685, 781
BstV2I GAAGAC 2 cut(s) 333, 495
Bsu15I ATCGAT 1 cut(s) 157
BsuRI GGCC 3 cut(s) 201, 451, 785
BsuTUI ATCGAT 1 cut(s) 157
BtsCI GGATG 2 cut(s) 597, 903
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 2 cut(s) 374, 425
Cfr10I RCCGGY 2 cut(s) 405, 525
Cfr13I GGNCC 2 cut(s) 199, 824
ClaI ATCGAT 1 cut(s) 157
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 738
CspAI ACCGGT 2 cut(s) 405, 525
CviAII CATG 3 cut(s) 359, 509, 735
CviQI GTAC 1 cut(s) 738
DdeI CTNAG 2 cut(s) 428, 760
DpnI GATC 6 cut(s) 160, 379, 630, 768, 777, 852
DpnII GATC 6 cut(s) 158, 377, 628, 766, 775, 850
DraIII CACNNNGTG 1 cut(s) 836
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 387, 517
Eco147I AGGCCT 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 824
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 2 cut(s) 387, 517
EcoT22I ATGCAT 1 cut(s) 736
ErhI CCWWGG 2 cut(s) 387, 517
FaeI CATG 3 cut(s) 362, 512, 738
FaiI YATR 6 cut(s) 170, 360, 510, 642, 736, 780
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 3 cut(s) 358, 508, 734
FbaI TGATCA 2 cut(s) 766, 775
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 5 cut(s) 370, 393, 551, 699, 795
FokI GGATG 2 cut(s) 584, 910
Fsp4HI GCNGC 5 cut(s) 370, 393, 551, 699, 795
FspBI CTAG 2 cut(s) 6, 933
GluI GCNGC 5 cut(s) 370, 393, 551, 699, 795
GsaI CCCAGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 938
HaeIII GGCC 3 cut(s) 201, 451, 785
HapII CCGG 4 cut(s) 406, 526, 555, 601
HgaI GACGC 1 cut(s) 22
Hin1II CATG 3 cut(s) 362, 512, 738
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 2 cut(s) 355, 844
HpaII CCGG 4 cut(s) 406, 526, 555, 601
HphI GGTGA 3 cut(s) 684, 822, 847
Hpy166II GTNNAC 2 cut(s) 37, 129
Hpy188I TCNGA 4 cut(s) 75, 763, 790, 983
Hpy188III TCNNGA 6 cut(s) 85, 601, 806, 836, 848, 869
Hpy8I GTNNAC 2 cut(s) 37, 129
HpyAV CCTTC 5 cut(s) 287, 359, 540, 885, 887
HpyCH4IV ACGT 2 cut(s) 463, 885
HpyCH4V TGCA 7 cut(s) 264, 395, 403, 423, 701, 734, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 420, 791
HpyF3I CTNAG 2 cut(s) 428, 760
HpySE526I ACGT 2 cut(s) 463, 885
Hsp92II CATG 3 cut(s) 362, 512, 738
Kpn2I TCCGGA 1 cut(s) 600
Ksp22I TGATCA 2 cut(s) 766, 775
Kzo9I GATC 6 cut(s) 158, 377, 628, 766, 775, 850
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 5 cut(s) 356, 379, 537, 685, 781
LweI GCATC 1 cut(s) 888
MaeI CTAG 2 cut(s) 6, 933
MaeII ACGT 2 cut(s) 463, 885
MaeIII GTNAC 3 cut(s) 137, 467, 836
MalI GATC 6 cut(s) 160, 379, 630, 768, 777, 852
MboI GATC 6 cut(s) 158, 377, 628, 766, 775, 850
MboII GAAGA 9 cut(s) 54, 57, 175, 206, 338, 497, 500, 616, 821
MluCI AATT 3 cut(s) 10, 589, 771
MlyI GAGTC 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 736
MroI TCCGGA 1 cut(s) 600
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 4 cut(s) 351, 446, 576, 729
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 4 cut(s) 406, 526, 555, 601
MspR9I CCNGG 2 cut(s) 197, 555
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 420, 791
NciI CCSGG 1 cut(s) 555
NdeII GATC 6 cut(s) 158, 377, 628, 766, 775, 850
NlaIII CATG 3 cut(s) 362, 512, 738
NmuCI GTSAC 1 cut(s) 836
NsiI ATGCAT 1 cut(s) 736
NspI RCATGY 2 cut(s) 512, 738
OliI CACNNNNGTG 1 cut(s) 408
PaqCI CACCTGC 1 cut(s) 703
PceI AGGCCT 1 cut(s) 785
PcsI WCGNNNNNNNCGW 1 cut(s) 794
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 844
PflMI CCANNNNNTGG 1 cut(s) 196
PinAI ACCGGT 2 cut(s) 405, 525
PkrI GCNGC 5 cut(s) 371, 394, 552, 700, 796
Ple19I CGATCG 1 cut(s) 161
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 195
PspPI GGNCC 2 cut(s) 199, 824
PstI CTGCAG 1 cut(s) 397
PvuI CGATCG 1 cut(s) 161
RsaI GTAC 1 cut(s) 739
RsaNI GTAC 1 cut(s) 738
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 4 cut(s) 351, 446, 576, 729
SatI GCNGC 5 cut(s) 370, 393, 551, 699, 795
Sau3AI GATC 6 cut(s) 158, 377, 628, 766, 775, 850
Sau96I GGNCC 2 cut(s) 199, 824
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 197, 555
SfaNI GCATC 1 cut(s) 888
SfcI CTRYAG 2 cut(s) 37, 393
SgrAI CRCCGGYG 1 cut(s) 405
SinI GGWCC 1 cut(s) 824
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 3 cut(s) 10, 589, 771
SseBI AGGCCT 1 cut(s) 785
SsiI CCGC 1 cut(s) 674
SspI AATATT 1 cut(s) 727
SspMI CTAG 2 cut(s) 6, 933
StuI AGGCCT 1 cut(s) 785
StyD4I CCNGG 2 cut(s) 195, 553
StyI CCWWGG 2 cut(s) 387, 517
TaiI ACGT 2 cut(s) 466, 888
TaqI TCGA 4 cut(s) 157, 161, 920, 942
TasI AATT 3 cut(s) 10, 589, 771
TatI WGTACW 1 cut(s) 737
TfiI GAWTC 1 cut(s) 844
Tru1I TTAA 4 cut(s) 351, 446, 576, 729
Tru9I TTAA 4 cut(s) 351, 446, 576, 729
TseFI GTSAC 1 cut(s) 836
TseI GCWGC 5 cut(s) 369, 392, 550, 698, 794
Tsp45I GTSAC 1 cut(s) 836
TspDTI ATGAA 2 cut(s) 498, 828
TspGWI ACGGA 1 cut(s) 578
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 824
VspI ATTAAT 1 cut(s) 729
XapI RAATTY 1 cut(s) 589
XceI RCATGY 2 cut(s) 512, 738
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 2 cut(s) 6, 933
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.