pycom09g18540

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0029372
Physical Location & Seq
Reverse (-)
19341977 .. 19343006
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g18540.1

Sequence Viewer

Length: 906 bp
ATGAAAATAAAAATATGCTTATGTGTAATCCTAGTCATTGGATCTGTTTCATCTTTTACTGATGCAGCTAGGATTTATTTGGATAAATGTGGTGACCTGGAAAGAGCTGGGGGATGTTTTTCTCGAGCAGGATGCTATCAAGATGCTGCGGAAGTGTATGCTAAGGGAAAATTTTTCTCCAAGTGTCTCACTGCATGTGCCAAAGGAAAGCTAATTGAAACGGGTCTGGAATACATCAAATATTGGAAGCAGCATCCAATAAAGGACACTGCTGCGGCTCGAAGGGGAGAAGGAATAGATGAAATTGAGCAGGCATTTCTCGAGAGCTGCGCACTTCACTATTACGAGTTGAAAGATAACAGATCCATGATGAATTTTGTTAGAGCTTTTCATTCTATAATTTCAAAGCGAAACTTTTTGAAGGAGCACGGTATTCTTGATGAGCTTCTTTTGTTGGAAGAAGGATTTGAAAACTATCTTGAGGCTGCAGAAGTCGCAAAACTAAAAGGCGATATTATACTTGAGGTTGATTTCCTTGAAAGGGCTGGCAAGTTCAGAGAGGCATCATTGCATATTCTAATCTATGTGCTTGCCAACTCTCTTTGGTCATATGGCAGCAAGGGATGGCCCGTAGAGCAGTTTTCACAAAAGGAGGAGCTTTTATCAAAAGCCAAGTCATGTGCTAAGAACGAGACGGAAAGTTTTTATGAGTTTGTTTGCACTGAGGTTGACTTTTTGTTAAATGAGCAGAATGACTTGGTTGTGATGAAAAATCACATGAATGCTTGCCAGAGACACAAGAGTGTTGGAGGTGAAATTTTAGCAGCTAAAAAAATACTGGATGCTCATCTTTCTTCAAGTGCCGATCGGTATGTGTGGGAAGAAATGTTGGTTGATGATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

302

Amino Acids

34.18

Weight (kDa)

5.72

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029372)

Species Orthologous Gene IDs
pyrus_communis pycom09g18540
rosa_multiflora Rmu_co8451561.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 331
AciI CCGC 2 cut(s) 149, 275
AclWI GGATC 2 cut(s) 49, 357
AcsI RAATTY 3 cut(s) 170, 373, 816
AfiI CCNNNNNNNGG 1 cut(s) 541
AgsI TTSAA 7 cut(s) 218, 352, 405, 421, 470, 539, 858
AjnI CCWGG 1 cut(s) 96
AleI CACNNNNGTG 1 cut(s) 801
AluBI AGCT 8 cut(s) 68, 107, 211, 327, 386, 445, 658, 827
AluI AGCT 8 cut(s) 68, 107, 211, 327, 386, 445, 658, 827
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 3 cut(s) 191, 686, 787
AlwI GGATC 2 cut(s) 49, 357
Ama87I CYCGRG 2 cut(s) 123, 320
AoxI GGCC 1 cut(s) 626
ApeKI GCWGC 8 cut(s) 65, 146, 250, 272, 327, 485, 615, 824
ApoI RAATTY 3 cut(s) 170, 373, 816
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 627
AsuHPI GGTGA 2 cut(s) 104, 824
AvaI CYCGRG 2 cut(s) 123, 320
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 8 cut(s) 77, 133, 259, 262, 314, 472, 627, 836
BccI CCATC 1 cut(s) 618
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 3 cut(s) 191, 686, 787
BfaI CTAG 2 cut(s) 32, 69
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 9 cut(s) 66, 147, 251, 273, 276, 328, 486, 616, 825
BlsI GCNGC 9 cut(s) 67, 148, 252, 274, 277, 329, 487, 617, 826
Bme1390I CCNGG 1 cut(s) 98
BmeT110I CYCGRG 2 cut(s) 123, 320
BmgT120I GGNCC 1 cut(s) 627
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 6 cut(s) 52, 122, 133, 262, 572, 832
Bpu10I CCTNAGC 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 500, 542
Bsa29I ATCGAT 1 cut(s) 901
BsaBI GATNNNNATC 1 cut(s) 846
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse1I ACTGG 1 cut(s) 843
Bse3DI GCAATG 1 cut(s) 566
Bse8I GATNNNNATC 1 cut(s) 846
BseBI CCWGG 1 cut(s) 98
BseCI ATCGAT 1 cut(s) 901
BseGI GGATG 5 cut(s) 119, 137, 253, 629, 847
BseJI GATNNNNATC 1 cut(s) 846
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 1 cut(s) 843
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 8 cut(s) 77, 133, 259, 262, 314, 472, 627, 836
BseYI CCCAGC 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 1 cut(s) 628
BshVI ATCGAT 1 cut(s) 901
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 429
BsiHKCI CYCGRG 2 cut(s) 123, 320
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 3 cut(s) 191, 686, 787
BsmBI CGTCTC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 1 cut(s) 628
BsoBI CYCGRG 2 cut(s) 123, 320
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 4 cut(s) 41, 362, 865, 898
BspACI CCGC 2 cut(s) 149, 275
BspANI GGCC 1 cut(s) 628
BspCNI CTCAG 1 cut(s) 715
BspDI ATCGAT 1 cut(s) 901
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 2 cut(s) 49, 357
BsrDI GCAATG 1 cut(s) 566
BsrI ACTGG 1 cut(s) 843
BssMI GATC 4 cut(s) 41, 362, 865, 898
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 431
BstC8I GCNNGC 4 cut(s) 312, 547, 591, 787
BstDEI CTNAG 3 cut(s) 162, 684, 723
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 5 cut(s) 119, 137, 253, 629, 847
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 4 cut(s) 44, 365, 868, 901
BstMAI GTCTC 3 cut(s) 191, 686, 787
BstMBI GATC 4 cut(s) 41, 362, 865, 898
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 2 cut(s) 494, 634
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 198
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 8 cut(s) 77, 133, 259, 262, 314, 472, 627, 836
BstX2I RGATCY 2 cut(s) 41, 362
BstYI RGATCY 2 cut(s) 41, 362
Bsu15I ATCGAT 1 cut(s) 901
BsuRI GGCC 1 cut(s) 628
BsuTUI ATCGAT 1 cut(s) 901
BtsCI GGATG 5 cut(s) 119, 137, 253, 629, 847
BtsI GCAGTG 2 cut(s) 189, 267
BtsIMutI CAGTG 3 cut(s) 189, 267, 720
Cac8I GCNNGC 4 cut(s) 312, 547, 591, 787
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 627
ClaI ATCGAT 1 cut(s) 901
CviAII CATG 4 cut(s) 195, 367, 678, 778
DdeI CTNAG 3 cut(s) 162, 684, 723
DpnI GATC 4 cut(s) 43, 364, 867, 900
DpnII GATC 4 cut(s) 41, 362, 865, 898
Eco88I CYCGRG 2 cut(s) 123, 320
Eco91I GGTNACC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 686
FaeI CATG 4 cut(s) 198, 370, 681, 781
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 4 cut(s) 194, 366, 677, 777
FauNDI CATATG 1 cut(s) 610
Fnu4HI GCNGC 9 cut(s) 66, 147, 251, 273, 276, 328, 486, 616, 825
FokI GGATG 5 cut(s) 126, 144, 240, 636, 854
Fsp4HI GCNGC 9 cut(s) 66, 147, 251, 273, 276, 328, 486, 616, 825
FspBI CTAG 2 cut(s) 32, 69
FspI TGCGCA 1 cut(s) 331
GlaI GCGC 1 cut(s) 331
GluI GCNGC 9 cut(s) 66, 147, 251, 273, 276, 328, 486, 616, 825
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 628
HhaI GCGC 1 cut(s) 332
Hin1II CATG 4 cut(s) 198, 370, 681, 781
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HphI GGTGA 2 cut(s) 104, 824
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 1 cut(s) 557
Hpy188III TCNNGA 7 cut(s) 123, 140, 227, 320, 322, 437, 479
Hpy8I GTNNAC 1 cut(s) 730
HpyAV CCTTC 4 cut(s) 276, 284, 415, 455
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 5 cut(s) 65, 194, 488, 571, 720
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 634
HpyF3I CTNAG 3 cut(s) 162, 684, 723
Hsp92II CATG 4 cut(s) 198, 370, 681, 781
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 41, 362, 865, 898
LmnI GCTCC 2 cut(s) 424, 655
LpnPI CCDG 9 cut(s) 83, 93, 110, 114, 212, 296, 531, 803, 824
Lsp1109I GCAGC 8 cut(s) 77, 133, 259, 262, 314, 472, 627, 836
LweI GCATC 6 cut(s) 52, 122, 133, 262, 572, 832
MaeI CTAG 2 cut(s) 32, 69
MaeIII GTNAC 1 cut(s) 92
MalI GATC 4 cut(s) 43, 364, 867, 900
MboI GATC 4 cut(s) 41, 362, 865, 898
MboII GAAGA 3 cut(s) 470, 846, 893
MflI RGATCY 2 cut(s) 41, 362
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 6 cut(s) 170, 213, 303, 373, 399, 816
MmeI TCCRAC 2 cut(s) 435, 787
MnlI CCTC 6 cut(s) 475, 517, 553, 646, 718, 803
MseI TTAA 1 cut(s) 740
MslI CAYNNNNRTG 2 cut(s) 780, 801
MspR9I CCNGG 1 cut(s) 98
Mva1269I GAATGC 1 cut(s) 787
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 494, 634
NdeI CATATG 1 cut(s) 610
NdeII GATC 4 cut(s) 41, 362, 865, 898
NlaIII CATG 4 cut(s) 198, 370, 681, 781
NmuCI GTSAC 1 cut(s) 92
NsbI TGCGCA 1 cut(s) 331
NspI RCATGY 1 cut(s) 198
OliI CACNNNNGTG 1 cut(s) 801
PaeR7I CTCGAG 2 cut(s) 123, 320
PctI GAATGC 1 cut(s) 787
PkrI GCNGC 9 cut(s) 67, 148, 252, 274, 277, 329, 487, 617, 826
Ple19I CGATCG 1 cut(s) 868
Psp6I CCWGG 1 cut(s) 96
PspEI GGTNACC 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 627
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 41, 362
PvuI CGATCG 1 cut(s) 868
RseI CAYNNNNRTG 2 cut(s) 780, 801
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 9 cut(s) 66, 147, 251, 273, 276, 328, 486, 616, 825
Sau3AI GATC 4 cut(s) 41, 362, 865, 898
Sau96I GGNCC 1 cut(s) 627
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 6 cut(s) 52, 122, 133, 262, 572, 832
SfcI CTRYAG 1 cut(s) 486
Sfr274I CTCGAG 2 cut(s) 123, 320
SlaI CTCGAG 2 cut(s) 123, 320
SmiMI CAYNNNNRTG 2 cut(s) 780, 801
SmlI CTYRAG 4 cut(s) 123, 320, 479, 521
SmoI CTYRAG 4 cut(s) 123, 320, 479, 521
Sse9I AATT 6 cut(s) 170, 213, 303, 373, 399, 816
SsiI CCGC 2 cut(s) 149, 275
SspI AATATT 1 cut(s) 242
SspMI CTAG 2 cut(s) 32, 69
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 4 cut(s) 124, 280, 321, 901
TasI AATT 6 cut(s) 170, 213, 303, 373, 399, 816
TauI GCSGC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TscAI CASTG 3 cut(s) 196, 274, 727
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 8 cut(s) 65, 146, 250, 272, 327, 485, 615, 824
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 7 cut(s) 17, 39, 315, 380, 386, 782, 794
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 3 cut(s) 196, 274, 727
XapI RAATTY 3 cut(s) 170, 373, 816
XceI RCATGY 1 cut(s) 198
XhoI CTCGAG 2 cut(s) 123, 320
XspI CTAG 2 cut(s) 32, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.