Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451561.1

Orthogroup ID

OG0029372

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1673

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ctatatcatgaacacaactacgaaatggccacaatgtgctttgaaagagcaggtgacacttactgggaaagaaggtctaaagcagctggccttaaagcacttgctgcccatatacgaacgtcaaatcctgaagaggctaaatctattctcagggaagctgctgaaatatttaacgctataggcaaggcagattctgctgccagatgtttttctgatctgggggagtatgaaagagctgctagaatatatttgaaatgtggggagtctgaactaaagagagccgcggaatgtttttctctagcaggacgatataaggaggcagcagatgtctatgctaagggtaattttttcgcagagtgtctcactatttgtgaaaagggaaaactatttgaactgggtttgcagtacatcaataactggaaacagcatgcagatgaggacactgctatgactactagaggaaaaggaataaatagaatgcagcttgaatttttagagagctgtgcacttcactattatgatttgaatgataacagatccatgattaagtttattaaagcttttccttctataactttggtgcgggactttttgaagaggttggatagccttgatgagcttttgttgttggaggaagaatttggaaattatctggaagctgcaaacatcgcacagcttaaaggtgaaattctacttgaatctgatttccttggaaaggcaggtaagttcaaagaagcctcattgaaaataatattctacgtacttgccatgtctctttggtcatctggcagcaagggctggcctctgaagaagtttccacaacaggaggccctcttggcaaaagccaagtcacttgccaagaatgagacagacaactttcatgagttggtttgcactgaggttgatattttattaaataggcaggataacttggcggtgctgaaaaatcaattgaattcttctcagagacaccagagtatcagaggggaagttttatctgctcgaaaaattttggatgcacatctttctcaaagaactgataagagaagattcttcacatatatgaatctgtgcgatgtttggaaactccagaatgcaagggatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

369

Amino Acids

42.23

Weight (kDa)

7.66

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029372)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g18540
rosa_multiflora	Rmu_co8451561.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	41
Acc36I	ACCTGC	2 cut(s)	41, 710
AccII	CGCG	1 cut(s)	284
AciI	CCGC	4 cut(s)	282, 284, 583, 935
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	5 cut(s)	488, 638, 687, 955, 1008
AcuI	CTGAAG	2 cut(s)	150, 827
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	407, 762
AfiI	CCNNNNNNNGG	1 cut(s)	715
AloI	GAACNNNNNNTCC	2 cut(s)	109, 141
AluBI	AGCT	9 cut(s)	86, 158, 236, 484, 501, 560, 619, 659, 676
AluI	AGCT	9 cut(s)	86, 158, 236, 484, 501, 560, 619, 659, 676
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	4 cut(s)	365, 777, 860, 961
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	531
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	4 cut(s)	27, 88, 800, 828
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	9 cut(s)	83, 104, 158, 197, 236, 320, 481, 659, 789
ApoI	RAATTY	5 cut(s)	488, 638, 687, 955, 1008
ArsI	GACNNNNNNTTYG	2 cut(s)	833, 865
AspS9I	GGNCC	1 cut(s)	829
AsuHPI	GGTGA	2 cut(s)	65, 695
BaeGI	GKGCMC	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	961, 994
BalI	TGGCCA	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	9 cut(s)	91, 95, 145, 184, 223, 332, 493, 646, 801
BcoDI	GTCTC	4 cut(s)	365, 777, 860, 961
BfaI	CTAG	3 cut(s)	240, 299, 456
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	2 cut(s)	41, 710
BglI	GCCNNNNNGGC	1 cut(s)	836
BmgT120I	GGNCC	1 cut(s)	829
BmrI	ACTGGG	2 cut(s)	73, 404
BmsI	GCATC	1 cut(s)	1006
BmuI	ACTGGG	2 cut(s)	73, 404
BpmI	CTGGAG	1 cut(s)	1073
Bpu10I	CCTNAGC	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	760
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaJI	CCNNGG	2 cut(s)	282, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse1I	ACTGG	3 cut(s)	68, 399, 422
Bse8I	GATNNNNATC	1 cut(s)	1020
BseDI	CCNNGG	2 cut(s)	282, 709
BseGI	GGATG	1 cut(s)	1021
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseMII	CTCAG	3 cut(s)	163, 888, 977
BseNI	ACTGG	3 cut(s)	68, 399, 422
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	9 cut(s)	91, 95, 145, 184, 223, 332, 493, 646, 801
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	4 cut(s)	29, 90, 802, 830
BsiHKAI	GWGCWC	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmAI	GTCTC	4 cut(s)	365, 777, 860, 961
BsmFI	GGGAC	1 cut(s)	599
BsmI	GAATGC	2 cut(s)	483, 1099
BsnI	GGCC	4 cut(s)	29, 90, 802, 830
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	214, 536
BspACI	CCGC	4 cut(s)	282, 284, 583, 935
BspANI	GGCC	4 cut(s)	29, 90, 802, 830
BspCNI	CTCAG	3 cut(s)	162, 889, 976
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	2 cut(s)	7, 880
BspMI	ACCTGC	2 cut(s)	41, 710
BspPI	GGATC	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	68, 399, 422
BssECI	CCNNGG	2 cut(s)	282, 709
BssMI	GATC	2 cut(s)	214, 536
BssT1I	CCWWGG	1 cut(s)	709
Bst6I	CTCTTC	2 cut(s)	126, 590
BstAPI	GCANNNNNTGC	2 cut(s)	104, 194
BstBAI	YACGTR	1 cut(s)	760
BstC8I	GCNNGC	3 cut(s)	88, 429, 800
BstDEI	CTNAG	4 cut(s)	149, 336, 897, 963
BstDSI	CCRYGG	1 cut(s)	282
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	1 cut(s)	1021
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	2 cut(s)	217, 539
BstMAI	GTCTC	4 cut(s)	365, 777, 860, 961
BstMBI	GATC	2 cut(s)	214, 536
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 194, 668, 795, 836
BstNSI	RCATGY	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	508
BstSNI	TACGTA	1 cut(s)	760
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	9 cut(s)	91, 95, 145, 184, 223, 332, 493, 646, 801
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
BsuRI	GGCC	4 cut(s)	29, 90, 802, 830
BtgI	CCRYGG	1 cut(s)	282
BtgZI	GCGATG	2 cut(s)	652, 1089
BtsCI	GGATG	1 cut(s)	1021
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	441, 894
BveI	ACCTGC	2 cut(s)	41, 710
Cac8I	GCNNGC	3 cut(s)	88, 429, 800
CaiI	CAGNNNCTG	1 cut(s)	194
CciI	TCATGA	2 cut(s)	7, 880
Cfr13I	GGNCC	1 cut(s)	829
Cfr42I	CCGCGG	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	406, 761
CviAII	CATG	5 cut(s)	8, 428, 541, 769, 881
CviQI	GTAC	2 cut(s)	406, 761
DdeI	CTNAG	4 cut(s)	149, 336, 897, 963
DpnI	GATC	2 cut(s)	216, 538
DpnII	GATC	2 cut(s)	214, 536
DraIII	CACNNNGTG	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	126, 590
EarI	CTCTTC	2 cut(s)	126, 590
Eco105I	TACGTA	1 cut(s)	760
Eco130I	CCWWGG	1 cut(s)	709
Eco57I	CTGAAG	2 cut(s)	150, 827
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRI	GAATTC	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	5 cut(s)	11, 431, 544, 772, 884
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	5 cut(s)	7, 427, 540, 768, 880
FauI	CCCGC	1 cut(s)	576
FokI	GGATG	1 cut(s)	1028
FspBI	CTAG	3 cut(s)	240, 299, 456
GsuI	CTGGAG	1 cut(s)	1073
HaeIII	GGCC	4 cut(s)	29, 90, 802, 830
Hin1II	CATG	5 cut(s)	11, 431, 544, 772, 884
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	5 cut(s)	191, 263, 698, 1050, 1066
HphI	GGTGA	2 cut(s)	65, 695
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	6 cut(s)	214, 268, 703, 807, 966, 983
Hpy188III	TCNNGA	5 cut(s)	8, 128, 653, 881, 1090
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	66, 576
HpyCH4IV	ACGT	2 cut(s)	119, 759
HpyCH4V	TGCA	8 cut(s)	403, 431, 481, 506, 662, 894, 1019, 1097
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 194, 668, 795, 836
HpyF3I	CTNAG	4 cut(s)	149, 336, 897, 963
HpySE526I	ACGT	2 cut(s)	119, 759
Hsp92II	CATG	5 cut(s)	11, 431, 544, 772, 884
KspI	CCGCGG	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	214, 536
Lsp1109I	GCAGC	9 cut(s)	91, 95, 145, 184, 223, 332, 493, 646, 801
LweI	GCATC	1 cut(s)	1006
MaeI	CTAG	3 cut(s)	240, 299, 456
MaeII	ACGT	2 cut(s)	119, 759
MaeIII	GTNAC	2 cut(s)	53, 849
MalI	GATC	2 cut(s)	216, 538
MboI	GATC	2 cut(s)	214, 536
MboII	GAAGA	7 cut(s)	143, 607, 647, 820, 951, 1045, 1059
MfeI	CAATTG	1 cut(s)	950
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	8 cut(s)	343, 488, 638, 646, 687, 950, 955, 1008
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	582, 609
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	6 cut(s)	93, 171, 546, 555, 678, 914
MslI	CAYNNNNRTG	4 cut(s)	432, 446, 516, 1061
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	86, 284
MunI	CAATTG	1 cut(s)	950
Mva1269I	GAATGC	2 cut(s)	483, 1099
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	5 cut(s)	104, 194, 668, 795, 836
NdeII	GATC	2 cut(s)	214, 536
NlaIII	CATG	5 cut(s)	11, 431, 544, 772, 884
NmuCI	GTSAC	2 cut(s)	53, 849
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PagI	TCATGA	2 cut(s)	7, 880
PaqCI	CACCTGC	1 cut(s)	41
PctI	GAATGC	2 cut(s)	483, 1099
PfeI	GAWTC	4 cut(s)	191, 698, 1050, 1066
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	760
PspPI	GGNCC	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	407, 762
RsaNI	GTAC	2 cut(s)	406, 761
RseI	CAYNNNNRTG	4 cut(s)	432, 446, 516, 1061
SacII	CCGCGG	1 cut(s)	285
SaqAI	TTAA	6 cut(s)	93, 171, 546, 555, 678, 914
Sau3AI	GATC	2 cut(s)	214, 536
Sau96I	GGNCC	1 cut(s)	829
SchI	GAGTC	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	1 cut(s)	1006
SfcI	CTRYAG	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	285
SgrBI	CCGCGG	1 cut(s)	285
SmiMI	CAYNNNNRTG	4 cut(s)	432, 446, 516, 1061
SnaBI	TACGTA	1 cut(s)	760
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	8 cut(s)	343, 488, 638, 646, 687, 950, 955, 1008
SsiI	CCGC	4 cut(s)	282, 284, 583, 935
SspI	AATATT	2 cut(s)	168, 753
SspMI	CTAG	3 cut(s)	240, 299, 456
StyI	CCWWGG	1 cut(s)	709
TaiI	ACGT	2 cut(s)	122, 762
TaqI	TCGA	1 cut(s)	1003
TasI	AATT	8 cut(s)	343, 488, 638, 646, 687, 950, 955, 1008
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	4 cut(s)	191, 698, 1050, 1066
Tru1I	TTAA	6 cut(s)	93, 171, 546, 555, 678, 914
Tru9I	TTAA	6 cut(s)	93, 171, 546, 555, 678, 914
TscAI	CASTG	2 cut(s)	448, 901
TseFI	GTSAC	2 cut(s)	53, 849
TseI	GCWGC	9 cut(s)	83, 104, 158, 197, 236, 320, 481, 659, 789
Tsp45I	GTSAC	2 cut(s)	53, 849
TspDTI	ATGAA	4 cut(s)	24, 243, 869, 1079
TspRI	CASTG	2 cut(s)	448, 901
VneI	GTGCAC	1 cut(s)	504
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	5 cut(s)	488, 638, 687, 955, 1008
XceI	RCATGY	1 cut(s)	431
XspI	CTAG	3 cut(s)	240, 299, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.