pycom09g19500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0028475
Physical Location & Seq
Reverse (-)
20345829 .. 20346302
474 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19500.1

Sequence Viewer

Length: 474 bp
ATGCCTACTTTAGATATGTTTAAAGGATTAGAAAACATAACTTTCCGACCAGCAACCAAAACGGATTGGGTCGATGCAAAGTGCCTTGCAGGAGACGGAATTCACCTCAAGGTGTTAGAAAATGAAGTGCTTCTCAAGATGATCAATGAGATGCTCAAGGGACTGTCGACGGGAATGACAGAGAGGATTGCTGGATATATACTTATACTTGTGTGGAACATGAGGTCCGAATCTGACAACAGTAGGCGCATCTTTCCAGAAAAGAGCCCAAGTAATCAAGGGATAGATGTTGAGGCCCTTTCTCACACAGTTGTATCACCCCAAGGGACAATCCCCATCAAGCTTTCTGCAGTAGGGCGAAACAGTTATTCCCTAAATGAGTATGTCAGAGTTGGATGTTTTCTTGCTGCCTCTCTGTTAAAATTGTTCAGAAGAACTGCATACTCTTGGGACAAAGCCAAGTTTCATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.65

Weight (kDa)

9.14

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhabdo_ncap_2 PF03216 30 - 154 2.6e-10 Rhabdovirus nucleoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028475)

Species Orthologous Gene IDs
malus_domestica MD09G1287500.v1.1
pyrus_communis pycom09g19500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 99
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 225, 295
AsuHPI GGTGA 2 cut(s) 95, 309
AvaII GGWCC 1 cut(s) 225
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BanII GRGCYC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 394
BccI CCATC 1 cut(s) 344
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 225, 295
BmsI GCATC 3 cut(s) 64, 141, 258
BpuEI CTTGAG 3 cut(s) 92, 119, 140
BsaJI CCNNGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 1 cut(s) 296
BslFI GGGAC 3 cut(s) 174, 340, 464
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 3 cut(s) 174, 340, 464
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 141
BspANI GGCC 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 322
Bst4CI ACNGT 4 cut(s) 165, 242, 310, 365
BstF5I GGATG 1 cut(s) 401
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 401
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 225, 295
CviAII CATG 1 cut(s) 220
CviJI RGCY 4 cut(s) 267, 296, 343, 458
CviKI_1 RGCY 4 cut(s) 267, 296, 343, 458
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
DraI TTTAAA 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 1 cut(s) 223
FaqI GGGAC 3 cut(s) 174, 340, 464
FatI CATG 1 cut(s) 219
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 408
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 296
HhaI GCGC 1 cut(s) 249
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 1 cut(s) 230
HphI GGTGA 2 cut(s) 95, 309
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 5 cut(s) 47, 229, 235, 389, 431
Hpy188III TCNNGA 2 cut(s) 136, 257
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 172
HpyCH4III ACNGT 4 cut(s) 165, 242, 310, 365
HpyCH4V TGCA 4 cut(s) 77, 89, 350, 440
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 4 cut(s) 63, 75, 177, 270
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 3 cut(s) 64, 141, 258
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 2 cut(s) 99, 422
MmeI TCCRAC 2 cut(s) 70, 373
MnlI CCTC 5 cut(s) 116, 177, 216, 286, 421
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 21, 419
NdeII GATC 1 cut(s) 141
NlaIII CATG 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 409
PspPI GGNCC 2 cut(s) 225, 295
PstI CTGCAG 1 cut(s) 352
SalI GTCGAC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 21, 419
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 2 cut(s) 225, 295
SduI GDGCHC 1 cut(s) 269
SetI ASST 4 cut(s) 108, 114, 227, 345
SfaNI GCATC 3 cut(s) 64, 141, 258
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 225
SmlI CTYRAG 3 cut(s) 107, 134, 155
SmoI CTYRAG 3 cut(s) 107, 134, 155
Sse9I AATT 2 cut(s) 99, 422
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 4 cut(s) 165, 242, 310, 365
TaqI TCGA 2 cut(s) 72, 167
TasI AATT 2 cut(s) 99, 422
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 21, 419
Tru9I TTAA 2 cut(s) 21, 419
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 138, 455
TspGWI ACGGA 2 cut(s) 77, 111
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.