Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0020424

Physical Location & Seq

Genomic Coordinates Forward (+)

20619029 .. 20620609

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCATGGCACTACATTGGCAGAACCAGAGGCCGCTGCCCTGGCATCAGGGCAACCTCCAAAGGTCTCTCTCCTCCGCCTCGCTGCCCTCAACAAGCCCGAGATTCCAGCACTTCTTCTTGGAACTTTAGCTGCAACCGCCAATGGTGTTATACTTCCAATTTTCGGTGTGCTTATTTCCAGGGTAATAAAGACTTTGTATGAACCACCTCGTCAACAAAAGAAAGATTCAGAGTTTTGGGCAATTATTTTTATGGTACTTGGTGTGTCATCATTTCTGGTGATCCCAGCACGAGGATACTTCTTTTCGGTTGCCGGTAGTAAGTTAATTGAACGTATCAGATTGATGTGTTTTGAGAGAGTGGTTCACATGGAAGTTGGGTGGTTTGATGAGCCTGAGAACTCAAGTGGTTCAGTTGGTGCGAGGCTCTCAGCAGATGCAGCAACAGTGCGGGCCCTTGTTGGAGATGCGCTAGCTCAGATTGTTAATAGCATTGCGACCGCAATTGCAGGTTTGGTCATTGCTTTCATTACATGCTGGCAGCTGGCATTTATTATCCTCGCAGTGATTCCTCTGATCGGAGTCAACGGATATGTTCAGGCAAAGTTCATGAAAGGATTCAGTGCCGACGCAAAGATGATGTATGAAGAAGCAAGCCAAGTTGCTAATGACGCAGTTGGGAGCATACGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTAATGGAACTGTACAGAAGGAAATGTGAAGGCCCTACAGCTGCAGGGAAAAGACAAGGCTTGATCAGTGGAATAGGATTTGGAATGTCTTCCTTCTTTCTATTTTGTGTGTATGCAACCAGCTTCTATGCGGGAGCTAGACTCGTCAAGGCTGGCAAAGCAACATTTAGCGACGTTTTCCAAGTTTTCTTTGCTTTGACCATGGCAGCCACGGGAATATCTCAGACGAGCAGCTTTGGTCCTGATTCTAGTAAAGCCAGGAGTGCTGCTGCTTCTATATTTGCAATTATAGACAGGAAGTCTAAGATAGACCCTAGTGACGAGTCTGGCGTGAAAATGGATAATGTAAAGGGAGAGATTGAGCTTCATCATATAAGCTTTAAATATCCATCCAGGCCAGATACACAGATTTTCCGAGACCTCAATTTAACCATTCACTGTGGCAAGACAGTTGCCCTGGTTGGAGAAAGTGGGAGTGGAAAATCGACAGTTGTTGCGTTGTTGCAACGATTTTATGATCCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

416

Amino Acids

44.51

Weight (kDa)

8.91

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020424)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G123800_v2.0.a1
pyrus_communis	pycom09g19780 pycom13g12100
rosa_multiflora	Rmu_sc0013900.1_g000001
rosa_rugosa	Rorug02G0607700
rosa_wichuraiana	Rw0G011860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	500
AciI	CCGC	6 cut(s)	33, 76, 138, 451, 501, 851
AclWI	GGATC	2 cut(s)	277, 1232
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	2 cut(s)	258, 734
AfiI	CCNNNNNNNGG	3 cut(s)	164, 293, 578
AgsI	TTSAA	1 cut(s)	332
AhdI	GACNNNNNGTC	1 cut(s)	1018
AjnI	CCWGG	5 cut(s)	39, 179, 977, 1112, 1176
AluBI	AGCT	9 cut(s)	131, 476, 544, 761, 843, 857, 954, 1084, 1098
AluI	AGCT	9 cut(s)	131, 476, 544, 761, 843, 857, 954, 1084, 1098
Alw26I	GTCTC	2 cut(s)	70, 1131
AlwI	GGATC	2 cut(s)	277, 1232
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	4 cut(s)	30, 453, 751, 1115
ApaI	GGGCCC	1 cut(s)	457
Asp700I	GAANNNNTTC	2 cut(s)	617, 808
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	4 cut(s)	453, 454, 752, 959
AsuHPI	GGTGA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	959
BaeGI	GKGCMC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	801
BccI	CCATC	1 cut(s)	1117
BciT130I	CCWGG	5 cut(s)	41, 181, 979, 1114, 1178
BciVI	GTATCC	1 cut(s)	290
BclI	TGATCA	1 cut(s)	783
BcoDI	GTCTC	2 cut(s)	70, 1131
BfaI	CTAG	4 cut(s)	473, 858, 969, 1035
BfmI	CTRYAG	2 cut(s)	756, 762
BfuAI	ACCTGC	1 cut(s)	500
BfuI	GTATCC	1 cut(s)	290
Bme1390I	CCNGG	5 cut(s)	41, 181, 979, 1114, 1178
Bme18I	GGWCC	1 cut(s)	959
BmeRI	GACNNNNNGTC	1 cut(s)	1018
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	4 cut(s)	453, 454, 752, 959
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	5 cut(s)	41, 181, 979, 1114, 1178
BmsI	GCATC	3 cut(s)	53, 427, 457
BmtI	GCTAGC	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	801
BplI	GAGNNNNNCTC	2 cut(s)	846, 878
BpuEI	CTTGAG	1 cut(s)	388
BsaI	GGTCTC	2 cut(s)	70, 1131
BsaJI	CCNNGG	5 cut(s)	39, 180, 921, 930, 1176
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 293, 578
Bse118I	RCCGGY	1 cut(s)	314
Bse3DI	GCAATG	2 cut(s)	492, 519
BseBI	CCWGG	5 cut(s)	41, 181, 979, 1114, 1178
BseDI	CCNNGG	5 cut(s)	39, 180, 921, 930, 1176
BseGI	GGATG	1 cut(s)	1109
BseLI	CCNNNNNNNGG	3 cut(s)	164, 293, 578
BseMI	GCAATG	2 cut(s)	492, 519
BseMII	CTCAG	4 cut(s)	387, 444, 491, 956
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	501
BshFI	GGCC	4 cut(s)	32, 455, 753, 1117
BsiEI	CGRYCG	1 cut(s)	501
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	164, 293, 578
BsmAI	GTCTC	2 cut(s)	70, 1131
BsnI	GGCC	4 cut(s)	32, 455, 753, 1117
Bso31I	GGTCTC	2 cut(s)	70, 1131
BsoBI	CYCGRG	1 cut(s)	98
Bsp120I	GGGCCC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	4 cut(s)	282, 576, 783, 1237
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	6 cut(s)	33, 76, 138, 451, 501, 851
BspANI	GGCC	4 cut(s)	32, 455, 753, 1117
BspCNI	CTCAG	4 cut(s)	388, 443, 490, 955
BspHI	TCATGA	2 cut(s)	609, 1244
BspLI	GGNNCC	1 cut(s)	455
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	500
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	277, 1232
BspTNI	GGTCTC	2 cut(s)	70, 1131
BsrDI	GCAATG	2 cut(s)	492, 519
BsrFI	RCCGGY	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	732
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	5 cut(s)	39, 180, 921, 930, 1176
BssMI	GATC	4 cut(s)	282, 576, 783, 1237
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	921
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	5 cut(s)	41, 181, 979, 1114, 1178
Bst4CI	ACNGT	6 cut(s)	448, 694, 732, 1160, 1171, 1210
Bst6I	CTCTTC	1 cut(s)	708
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	6 cut(s)	453, 474, 539, 546, 655, 874
BstDEI	CTNAG	5 cut(s)	396, 430, 477, 942, 1023
BstDSI	CCRYGG	2 cut(s)	921, 930
BstF5I	GGATG	1 cut(s)	1109
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	4 cut(s)	285, 579, 786, 1240
BstMAI	GTCTC	2 cut(s)	70, 1131
BstMBI	GATC	4 cut(s)	282, 576, 783, 1237
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 137, 440, 671, 878, 983
BstNI	CCWGG	5 cut(s)	41, 181, 979, 1114, 1178
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	5 cut(s)	39, 179, 977, 1112, 1176
BstSFI	CTRYAG	2 cut(s)	756, 762
BstSLI	GKGCMC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	4 cut(s)	32, 455, 753, 1117
BtgI	CCRYGG	2 cut(s)	921, 930
BtsCI	GGATG	1 cut(s)	1109
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	5 cut(s)	453, 570, 628, 793, 1156
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	6 cut(s)	453, 474, 539, 546, 655, 874
CciI	TCATGA	2 cut(s)	609, 1244
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	4 cut(s)	453, 454, 752, 959
CseI	GACGC	2 cut(s)	638, 680
Csp6I	GTAC	2 cut(s)	257, 733
CviAII	CATG	6 cut(s)	5, 370, 534, 610, 922, 1245
CviQI	GTAC	2 cut(s)	257, 733
DdeI	CTNAG	5 cut(s)	396, 430, 477, 942, 1023
DpnI	GATC	4 cut(s)	284, 578, 785, 1239
DpnII	GATC	4 cut(s)	282, 576, 783, 1237
DraI	TTTAAA	1 cut(s)	1102
DriI	GACNNNNNGTC	1 cut(s)	1018
Eam1104I	CTCTTC	1 cut(s)	708
Eam1105I	GACNNNNNGTC	1 cut(s)	1018
EarI	CTCTTC	1 cut(s)	708
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	2 cut(s)	70, 1131
Eco47I	GGWCC	1 cut(s)	959
Eco57I	CTGAAG	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	2 cut(s)	454, 752
EcoRII	CCWGG	5 cut(s)	39, 179, 977, 1112, 1176
EcoT14I	CCWWGG	1 cut(s)	921
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	6 cut(s)	8, 373, 537, 613, 925, 1248
FatI	CATG	6 cut(s)	4, 369, 533, 609, 921, 1244
FauI	CCCGC	2 cut(s)	444, 844
FbaI	TGATCA	1 cut(s)	783
FokI	GGATG	1 cut(s)	1096
FriOI	GRGCYC	1 cut(s)	457
FspBI	CTAG	4 cut(s)	473, 858, 969, 1035
GlaI	GCGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	4 cut(s)	32, 455, 753, 1117
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	2 cut(s)	638, 680
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	6 cut(s)	8, 373, 537, 613, 925, 1248
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	2 cut(s)	215, 586
HindII	GTYRAC	2 cut(s)	215, 586
HindIII	AAGCTT	1 cut(s)	1096
HinfI	GANTC	8 cut(s)	103, 227, 568, 582, 618, 861, 965, 1043
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	3 cut(s)	215, 367, 586
Hpy188I	TCNGA	7 cut(s)	232, 341, 480, 576, 581, 945, 1136
Hpy188III	TCNNGA	3 cut(s)	610, 962, 1245
Hpy8I	GTNNAC	3 cut(s)	215, 367, 586
Hpy99I	CGWCG	2 cut(s)	632, 896
HpyAV	CCTTC	4 cut(s)	712, 732, 743, 823
HpyCH4III	ACNGT	6 cut(s)	448, 694, 732, 1160, 1171, 1210
HpyCH4IV	ACGT	2 cut(s)	334, 894
HpyCH4V	TGCA	8 cut(s)	4, 134, 440, 509, 764, 836, 1004, 1225
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 137, 440, 671, 878, 983
HpyF3I	CTNAG	5 cut(s)	396, 430, 477, 942, 1023
HpySE526I	ACGT	2 cut(s)	334, 894
Hsp92II	CATG	6 cut(s)	8, 373, 537, 613, 925, 1248
HspAI	GCGC	1 cut(s)	470
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	4 cut(s)	282, 576, 783, 1237
LmnI	GCTCC	2 cut(s)	681, 854
LweI	GCATC	3 cut(s)	53, 427, 457
MaeI	CTAG	4 cut(s)	473, 858, 969, 1035
MaeII	ACGT	2 cut(s)	334, 894
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	4 cut(s)	284, 578, 785, 1239
MboI	GATC	4 cut(s)	282, 576, 783, 1237
MboII	GAAGA	4 cut(s)	107, 659, 725, 801
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	6 cut(s)	159, 243, 327, 504, 1005, 1144
MlyI	GAGTC	3 cut(s)	591, 855, 1052
MmeI	TCCRAC	2 cut(s)	442, 1162
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	617, 808
MseI	TTAA	4 cut(s)	326, 486, 1101, 1148
MspA1I	CMGCKG	3 cut(s)	35, 544, 761
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	5 cut(s)	41, 181, 979, 1114, 1178
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	5 cut(s)	41, 181, 979, 1114, 1178
MwoI	GCNNNNNNNGC	6 cut(s)	41, 137, 440, 671, 878, 983
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	4 cut(s)	282, 576, 783, 1237
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	6 cut(s)	8, 373, 537, 613, 925, 1248
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	1037
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	537
PagI	TCATGA	2 cut(s)	609, 1244
PcsI	WCGNNNNNNNCGW	1 cut(s)	1047
PdmI	GAANNNNTTC	2 cut(s)	617, 808
PfeI	GAWTC	5 cut(s)	103, 227, 568, 618, 965
PleI	GAGTC	3 cut(s)	590, 855, 1051
PpsI	GAGTC	3 cut(s)	590, 855, 1051
Psp6I	CCWGG	5 cut(s)	39, 179, 977, 1112, 1176
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	5 cut(s)	39, 179, 977, 1112, 1176
PspN4I	GGNNCC	1 cut(s)	455
PspOMI	GGGCCC	1 cut(s)	453
PspPI	GGNCC	4 cut(s)	453, 454, 752, 959
PstI	CTGCAG	1 cut(s)	766
PvuII	CAGCTG	2 cut(s)	544, 761
RsaI	GTAC	2 cut(s)	258, 734
RsaNI	GTAC	2 cut(s)	257, 733
SaqAI	TTAA	4 cut(s)	326, 486, 1101, 1148
Sau3AI	GATC	4 cut(s)	282, 576, 783, 1237
Sau96I	GGNCC	4 cut(s)	453, 454, 752, 959
SchI	GAGTC	3 cut(s)	591, 855, 1052
ScrFI	CCNGG	5 cut(s)	41, 181, 979, 1114, 1178
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	3 cut(s)	53, 427, 457
SfcI	CTRYAG	2 cut(s)	756, 762
SinI	GGWCC	1 cut(s)	959
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	6 cut(s)	159, 243, 327, 504, 1005, 1144
SsiI	CCGC	6 cut(s)	33, 76, 138, 451, 501, 851
SspMI	CTAG	4 cut(s)	473, 858, 969, 1035
StyD4I	CCNGG	5 cut(s)	39, 179, 977, 1112, 1176
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	6 cut(s)	448, 694, 732, 1160, 1171, 1210
TaiI	ACGT	2 cut(s)	337, 897
TaqI	TCGA	1 cut(s)	1205
TasI	AATT	6 cut(s)	159, 243, 327, 504, 1005, 1144
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	5 cut(s)	103, 227, 568, 618, 965
Tru1I	TTAA	4 cut(s)	326, 486, 1101, 1148
Tru9I	TTAA	4 cut(s)	326, 486, 1101, 1148
TscAI	CASTG	5 cut(s)	453, 570, 628, 793, 1163
TseFI	GTSAC	1 cut(s)	1037
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	6 cut(s)	216, 517, 598, 626, 660, 1076
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	5 cut(s)	453, 570, 628, 793, 1163
VpaK11BI	GGWCC	1 cut(s)	959
XceI	RCATGY	1 cut(s)	537
XmnI	GAANNNNTTC	2 cut(s)	617, 808
XspI	CTAG	4 cut(s)	473, 858, 969, 1035
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.