Rmu_sc0013900.1_g000001

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013900.1
Physical Location & Seq
Reverse (-)
1 .. 2562
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013900.1_g000001.1.cds

Sequence Viewer

Length: 1980 bp
atggtgggtgagcatggaactcaactatctgggggccaaaagcagagagttgctatagctcgagcaattctaaaaaacccaagaattctacttttagatgaagccacaagtgctcttgacgcagaatctgagagagttgtgcaggaggcactggatagaattatggttaaccggactaccgtcatagtagcccatcgcttgagcacagtaaggaatgctgataccattgctgtaataaatcgaggaacaattgttgaacaaggaccacattccgagctagttaaggatcctgagggagcatatagccagcttataagactacaagaaaccagaactgtgtcagaacagactggtgtaaatgatcaggataggccagatatttcttccgattctcggagacggtcaagtcaaagattttctttattaagatccataagccgtggatcatctggaagagcaaatagtattcgtcattcattctcaatctcatttggtggtgcacctgctgcaatcggcatccttgaaacaaatcctgctgaacctgatactcatgctccagcatcatctaaagggcatccagaagtctcacttagccgcctagctgccctgaacaagccagagatcccagtgctgcttcttggtactttagctgcagcagccaatggggcgatcttacctgtttttgggatactaatatccagtgtaatcaagaccttctttgagccacctgatcaactgagtaaggattcaaagttttgggcattaatctttgttgttcttggagttgcatcgttcttggcacaatcatcaagagcatatctttttggtgtggctggatgtaagttgataagaagagttcgatcaaagtgctttgagaaggtggtttacatggacataggttggtttgatgagtctgatcattcaagtggtgcaattggggcaaggctttctacagatgcggcttctctaagagggttggttggagatgctctaggtttgttggttcagaatatagcaactgcagttgccggcctagttattgctttcgtagcaaattggcaattggctcttataatccttgtcctgctgccaatgttaggagttagtggatattttcaagtcaagttaatgaaagggttcagtgcagatgcaaagaaaatgtacgaggacgcaagccaagtagccaatgatgctgttgggagtattagaacaattgcttccttttgtgctgaagagaaggtgatggaactgtaccaggaaaaatgcgaaggtcctattaaaagtgggataagacaaggcttagttagcggaattggttttgggctatcgttctttttgctattttctgtgtatgcctgcagtttctatgctggagcccgacttgttgcagcaggcaagacagaattttctgacgtgtttcgggttttctttgctctcactatgacagctgttggaatatctcagtcgagctccctagcccctgatataagtaaaggaaagagttctgcttcttccatatttgcaattcttgacggcaagtcaaaaatagactctagtgacgactctggaactacaatagaaaatgtgaagggagatattgaactacgccatgtcagtttcaagtatccaactagacccaacgtgccaatctttcaggatctttgcttgaccattcatcatggcaagacggttgctctggttggagaaagtggtagtgggaagtcgacagtgatctcattgttgcagagattttatgaccctgattcaggtcacattacattagatggaatcgaaatccaaaagctacaactgaagtggttgagacagcaaatggggctggtgagccaagagcctctgctgtttaatgacactatccgagccaacattgcatatggaaaggatgggaatgcaaccgaagctgaaattatagctgcagcagaattggcaaatgcccacaagttcattagtagcttacagcag

Protein Analysis

660

Amino Acids

70.95

Weight (kDa)

8.09

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020424)

Species Orthologous Gene IDs
prunus_persica Prupe.3G123800_v2.0.a1
pyrus_communis pycom09g19780 pycom13g12100
rosa_multiflora Rmu_sc0013900.1_g000001
rosa_rugosa Rorug02G0607700
rosa_wichuraiana Rw0G011860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 314, 1073
AarI CACCTGC 1 cut(s) 511
AasI GACNNNNNNGTC 1 cut(s) 405
Acc36I ACCTGC 1 cut(s) 511
AccI GTMKAC 1 cut(s) 1724
AciI CCGC 3 cut(s) 595, 959, 1308
AclWI GGATC 6 cut(s) 281, 294, 423, 451, 616, 1665
AcsI RAATTY 2 cut(s) 84, 1403
AcuI CTGAAG 2 cut(s) 1251, 1832
AfaI GTAC 3 cut(s) 643, 1163, 1253
AfiI CCNNNNNNNGG 4 cut(s) 393, 683, 1097, 1766
AflIII ACRYGT 1 cut(s) 1413
AgsI TTSAA 7 cut(s) 257, 524, 750, 924, 1118, 1601, 1621
AhdI GACNNNNNGTC 1 cut(s) 1537
AjiI CACGTC 1 cut(s) 1414
AjnI CCWGG 1 cut(s) 1254
Alw21I GWGCWC 4 cut(s) 115, 206, 502, 1472
Alw26I GTCTC 3 cut(s) 391, 589, 1816
Alw44I GTGCAC 1 cut(s) 498
AlwI GGATC 6 cut(s) 281, 294, 423, 451, 616, 1665
AlwNI CAGNNNCTG 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 3 cut(s) 34, 371, 1030
ApaLI GTGCAC 1 cut(s) 498
ApoI RAATTY 2 cut(s) 84, 1403
AseI ATTAAT 1 cut(s) 764
Asp700I GAANNNNTTC 2 cut(s) 1136, 1501
AspS9I GGNCC 3 cut(s) 34, 263, 1271
AsuHPI GGTGA 3 cut(s) 20, 1252, 1852
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 263, 1271
AxyI CCTNAGG 1 cut(s) 291
BaeGI GKGCMC 1 cut(s) 502
BamHI GGATCC 1 cut(s) 286
BanII GRGCYC 2 cut(s) 1378, 1472
BarI GAAGNNNNNNTAC 2 cut(s) 869, 901
Bbv12I GWGCWC 4 cut(s) 115, 206, 502, 1472
BccI CCATC 4 cut(s) 201, 1237, 1778, 1895
BceAI ACGGC 2 cut(s) 423, 1549
BcgI CGANNNNNNTGC 2 cut(s) 849, 883
BciT130I CCWGG 1 cut(s) 1256
BciVI GTATCC 2 cut(s) 681, 1635
BclI TGATCA 3 cut(s) 361, 730, 916
BcoDI GTCTC 3 cut(s) 391, 589, 1816
BfaI CTAG 7 cut(s) 278, 599, 992, 1034, 1475, 1554, 1632
BfmI CTRYAG 6 cut(s) 54, 651, 951, 1020, 1357, 1932
BfuAI ACCTGC 1 cut(s) 511
BfuI GTATCC 2 cut(s) 681, 1635
BglI GCCNNNNNGGC 1 cut(s) 665
Bme1390I CCNGG 1 cut(s) 1256
Bme18I GGWCC 2 cut(s) 263, 1271
BmeRI GACNNNNNGTC 1 cut(s) 1537
BmeT110I CYCGRG 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 1414
BmgT120I GGNCC 3 cut(s) 34, 263, 1271
BmiI GGNNCC 3 cut(s) 35, 288, 1375
BmrFI CCNGG 1 cut(s) 1256
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 8 cut(s) 525, 569, 583, 797, 946, 976, 1138, 1180
BmuI ACTGGG 1 cut(s) 620
BoxI GACNNNNGTC 1 cut(s) 179
BpmI CTGGAG 2 cut(s) 540, 1392
BpuEI CTTGAG 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 4 cut(s) 393, 683, 1097, 1766
Bse118I RCCGGY 1 cut(s) 1028
Bse1I ACTGG 4 cut(s) 156, 355, 626, 699
Bse21I CCTNAGG 1 cut(s) 291
Bse3DI GCAATG 2 cut(s) 225, 1884
BseBI CCWGG 1 cut(s) 1256
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 4 cut(s) 516, 574, 842, 1906
BseLI CCNNNNNNNGG 4 cut(s) 393, 683, 1097, 1766
BseMI GCAATG 2 cut(s) 225, 1884
BseMII CTCAG 4 cut(s) 120, 282, 728, 1475
BseNI ACTGG 4 cut(s) 156, 355, 626, 699
BseSI GKGCMC 1 cut(s) 502
BsgI GTGCAG 2 cut(s) 161, 1164
BshFI GGCC 3 cut(s) 36, 373, 1032
BsiHKAI GWGCWC 4 cut(s) 115, 206, 502, 1472
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 172, 1029
BslI CCNNNNNNNGG 4 cut(s) 393, 683, 1097, 1766
BsmAI GTCTC 3 cut(s) 391, 589, 1816
BsmBI CGTCTC 1 cut(s) 391
BsmI GAATGC 2 cut(s) 220, 1912
BsnI GGCC 3 cut(s) 36, 373, 1032
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 5 cut(s) 115, 206, 502, 1378, 1472
BspACI CCGC 3 cut(s) 595, 959, 1308
BspANI GGCC 3 cut(s) 36, 373, 1032
BspCNI CTCAG 4 cut(s) 121, 283, 729, 1474
BspLI GGNNCC 3 cut(s) 35, 288, 1375
BspMAI CTGCAG 4 cut(s) 655, 1024, 1361, 1936
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 6 cut(s) 281, 294, 423, 451, 616, 1665
BspQI GCTCTTC 1 cut(s) 448
BsrDI GCAATG 2 cut(s) 225, 1884
BsrFI RCCGGY 1 cut(s) 1028
BsrI ACTGG 4 cut(s) 156, 355, 626, 699
BssAI RCCGGY 1 cut(s) 1028
BssECI CCNNGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 1256
Bst4CI ACNGT 7 cut(s) 181, 208, 337, 402, 1251, 1690, 1729
Bst6I CTCTTC 3 cut(s) 448, 847, 1227
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 5 cut(s) 308, 1030, 1174, 1357, 1393
BstDEI CTNAG 7 cut(s) 129, 291, 590, 737, 968, 1300, 1461
BstDSI CCRYGG 1 cut(s) 439
BstENI CCTNNNNNAGG 1 cut(s) 1764
BstF5I GGATG 4 cut(s) 516, 574, 842, 1906
BstMAI GTCTC 3 cut(s) 391, 589, 1816
BstNI CCWGG 1 cut(s) 1256
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 1254
BstSFI CTRYAG 6 cut(s) 54, 651, 951, 1020, 1357, 1932
BstSLI GKGCMC 1 cut(s) 502
BstX2I RGATCY 4 cut(s) 286, 428, 621, 1657
BstYI RGATCY 4 cut(s) 286, 428, 621, 1657
Bsu36I CCTNAGG 1 cut(s) 291
BsuI GTATCC 2 cut(s) 681, 1635
BsuRI GGCC 3 cut(s) 36, 373, 1032
BtgI CCRYGG 1 cut(s) 439
BtgZI GCGATG 1 cut(s) 179
BtrI CACGTC 1 cut(s) 1414
BtsCI GGATG 4 cut(s) 516, 574, 842, 1906
BtsIMutI CAGTG 5 cut(s) 149, 633, 706, 1147, 1734
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 5 cut(s) 308, 1030, 1174, 1357, 1393
CaiI CAGNNNCTG 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 1028
Cfr13I GGNCC 3 cut(s) 34, 263, 1271
CseI GACGC 2 cut(s) 128, 1178
Csp6I GTAC 3 cut(s) 642, 1162, 1252
CspCI CAANNNNNGTGG 2 cut(s) 1796, 1831
CviAII CATG 5 cut(s) 14, 551, 889, 1610, 1679
CviQI GTAC 3 cut(s) 642, 1162, 1252
DdeI CTNAG 7 cut(s) 129, 291, 590, 737, 968, 1300, 1461
DrdI GACNNNNNNGTC 1 cut(s) 405
DriI GACNNNNNGTC 1 cut(s) 1537
DseDI GACNNNNNNGTC 1 cut(s) 405
Eam1104I CTCTTC 3 cut(s) 448, 847, 1227
Eam1105I GACNNNNNGTC 1 cut(s) 1537
EarI CTCTTC 3 cut(s) 448, 847, 1227
Ecl136II GAGCTC 1 cut(s) 1470
Eco24I GRGCYC 2 cut(s) 1378, 1472
Eco47I GGWCC 2 cut(s) 263, 1271
Eco53kI GAGCTC 1 cut(s) 1470
Eco57I CTGAAG 2 cut(s) 1251, 1832
Eco81I CCTNAGG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 1470
EcoNI CCTNNNNNAGG 1 cut(s) 1764
EcoO109I RGGNCCY 1 cut(s) 1271
EcoRI GAATTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 1254
EcoT38I GRGCYC 2 cut(s) 1378, 1472
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 5 cut(s) 17, 554, 892, 1613, 1682
FalI AAGNNNNNCTT 6 cut(s) 403, 435, 573, 605, 701, 733
FatI CATG 5 cut(s) 13, 550, 888, 1609, 1678
FauNDI CATATG 1 cut(s) 1891
FbaI TGATCA 3 cut(s) 361, 730, 916
FblI GTMKAC 1 cut(s) 1724
FokI GGATG 4 cut(s) 503, 561, 849, 1913
FriOI GRGCYC 2 cut(s) 1378, 1472
FspBI CTAG 7 cut(s) 278, 599, 992, 1034, 1475, 1554, 1632
GsuI CTGGAG 2 cut(s) 540, 1392
HaeIII GGCC 3 cut(s) 36, 373, 1032
HapII CCGG 2 cut(s) 172, 1029
HgaI GACGC 2 cut(s) 128, 1178
Hin1II CATG 5 cut(s) 17, 554, 892, 1613, 1682
HincII GTYRAC 2 cut(s) 169, 1725
HindII GTYRAC 2 cut(s) 169, 1725
HinfI GANTC 8 cut(s) 125, 389, 746, 911, 1550, 1562, 1763, 1788
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 2 cut(s) 172, 1029
HphI GGTGA 3 cut(s) 20, 1252, 1852
Hpy166II GTNNAC 4 cut(s) 169, 500, 886, 1725
Hpy188I TCNGA 9 cut(s) 130, 274, 343, 388, 396, 916, 1008, 1411, 1877
Hpy8I GTNNAC 4 cut(s) 169, 500, 886, 1725
HpyAV CCTTC 5 cut(s) 724, 871, 1231, 1262, 1582
HpyCH4III ACNGT 7 cut(s) 181, 208, 337, 402, 1251, 1690, 1729
HpyCH4IV ACGT 2 cut(s) 1413, 1641
HpyF3I CTNAG 7 cut(s) 129, 291, 590, 737, 968, 1300, 1461
HpySE526I ACGT 2 cut(s) 1413, 1641
Hsp92II CATG 5 cut(s) 17, 554, 892, 1613, 1682
KroI GCCGGC 1 cut(s) 1028
KroNI GCCGGC 1 cut(s) 1030
Ksp22I TGATCA 3 cut(s) 361, 730, 916
KspAI GTTAAC 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 448
LmnI GCTCC 4 cut(s) 296, 559, 1373, 1475
LweI GCATC 8 cut(s) 525, 569, 583, 797, 946, 976, 1138, 1180
MaeI CTAG 7 cut(s) 278, 599, 992, 1034, 1475, 1554, 1632
MaeII ACGT 2 cut(s) 1413, 1641
MaeIII GTNAC 2 cut(s) 1556, 1769
MboII GAAGA 5 cut(s) 375, 465, 864, 1244, 1503
MfeI CAATTG 4 cut(s) 249, 933, 1061, 1212
MflI RGATCY 4 cut(s) 286, 428, 621, 1657
MhlI GDGCHC 5 cut(s) 115, 206, 502, 1378, 1472
MlyI GAGTC 3 cut(s) 920, 1544, 1556
MmeI TCCRAC 4 cut(s) 961, 1432, 1652, 1681
MnlI CCTC 6 cut(s) 139, 236, 286, 965, 1159, 1863
MroNI GCCGGC 1 cut(s) 1028
MroXI GAANNNNTTC 2 cut(s) 1136, 1501
MseI TTAA 7 cut(s) 168, 282, 425, 764, 1127, 1278, 1863
MslI CAYNNNNRTG 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 1448
MspI CCGG 2 cut(s) 172, 1029
MspR9I CCNGG 1 cut(s) 1256
MunI CAATTG 4 cut(s) 249, 933, 1061, 1212
Mva1269I GAATGC 2 cut(s) 220, 1912
MvaI CCWGG 1 cut(s) 1256
NaeI GCCGGC 1 cut(s) 1030
NdeI CATATG 1 cut(s) 1891
NgoMIV GCCGGC 1 cut(s) 1028
NlaIII CATG 5 cut(s) 17, 554, 892, 1613, 1682
NlaIV GGNNCC 3 cut(s) 35, 288, 1375
NmuCI GTSAC 2 cut(s) 1556, 1769
PaeR7I CTCGAG 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 448
PctI GAATGC 2 cut(s) 220, 1912
PdiI GCCGGC 1 cut(s) 1030
PdmI GAANNNNTTC 2 cut(s) 1136, 1501
PfeI GAWTC 5 cut(s) 125, 389, 746, 1763, 1788
PleI GAGTC 3 cut(s) 919, 1544, 1556
PpsI GAGTC 3 cut(s) 919, 1544, 1556
PpuMI RGGWCCY 1 cut(s) 1271
PshAI GACNNNNGTC 1 cut(s) 179
PshBI ATTAAT 1 cut(s) 764
PsiI TTATAA 2 cut(s) 314, 1073
Psp124BI GAGCTC 1 cut(s) 1472
Psp5II RGGWCCY 1 cut(s) 1271
Psp6I CCWGG 1 cut(s) 1254
PspGI CCWGG 1 cut(s) 1254
PspN4I GGNNCC 3 cut(s) 35, 288, 1375
PspPI GGNCC 3 cut(s) 34, 263, 1271
PspPPI RGGWCCY 1 cut(s) 1271
PspXI VCTCGAGB 1 cut(s) 60
PstI CTGCAG 4 cut(s) 655, 1024, 1361, 1936
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 4 cut(s) 286, 428, 621, 1657
PvuII CAGCTG 1 cut(s) 1448
RsaI GTAC 3 cut(s) 643, 1163, 1253
RsaNI GTAC 3 cut(s) 642, 1162, 1252
RseI CAYNNNNRTG 1 cut(s) 924
SacI GAGCTC 1 cut(s) 1472
SalI GTCGAC 1 cut(s) 1723
SapI GCTCTTC 1 cut(s) 448
SaqAI TTAA 7 cut(s) 168, 282, 425, 764, 1127, 1278, 1863
Sau96I GGNCC 3 cut(s) 34, 263, 1271
SchI GAGTC 3 cut(s) 920, 1544, 1556
ScrFI CCNGG 1 cut(s) 1256
SduI GDGCHC 5 cut(s) 115, 206, 502, 1378, 1472
SfaNI GCATC 8 cut(s) 525, 569, 583, 797, 946, 976, 1138, 1180
SfcI CTRYAG 6 cut(s) 54, 651, 951, 1020, 1357, 1932
Sfr274I CTCGAG 1 cut(s) 60
SinI GGWCC 2 cut(s) 263, 1271
SlaI CTCGAG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 924
SmlI CTYRAG 2 cut(s) 60, 199
SmoI CTYRAG 2 cut(s) 60, 199
SsiI CCGC 3 cut(s) 595, 959, 1308
SspMI CTAG 7 cut(s) 278, 599, 992, 1034, 1475, 1554, 1632
SstI GAGCTC 1 cut(s) 1472
StyD4I CCNGG 1 cut(s) 1254
TaaI ACNGT 7 cut(s) 181, 208, 337, 402, 1251, 1690, 1729
TaiI ACGT 2 cut(s) 1416, 1644
TaqI TCGA 6 cut(s) 61, 241, 859, 1466, 1724, 1791
TauI GCSGC 2 cut(s) 597, 962
TfiI GAWTC 5 cut(s) 125, 389, 746, 1763, 1788
Tru1I TTAA 7 cut(s) 168, 282, 425, 764, 1127, 1278, 1863
Tru9I TTAA 7 cut(s) 168, 282, 425, 764, 1127, 1278, 1863
TscAI CASTG 5 cut(s) 156, 633, 706, 1147, 1734
TseFI GTSAC 2 cut(s) 1556, 1769
Tsp45I GTSAC 2 cut(s) 1556, 1769
TspDTI ATGAA 5 cut(s) 114, 465, 1145, 1664, 1951
TspRI CASTG 5 cut(s) 156, 633, 706, 1147, 1734
VneI GTGCAC 1 cut(s) 498
VpaK11BI GGWCC 2 cut(s) 263, 1271
VspI ATTAAT 1 cut(s) 764
XagI CCTNNNNNAGG 1 cut(s) 1764
XapI RAATTY 2 cut(s) 84, 1403
XhoI CTCGAG 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 1724
XmnI GAANNNNTTC 2 cut(s) 1136, 1501
XspI CTAG 7 cut(s) 278, 599, 992, 1034, 1475, 1554, 1632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.