Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0028179

Physical Location & Seq

Genomic Coordinates Forward (+)

3657492 .. 3659211

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATTATGTCTATCAAATTTAGTAACTACTTTTTCGATCGATACAAAAAATTATGTACTTTCACTGTTTCTAATCTTGGGATGTTTGGTGTTGATCGGTTTGATGCTATTCTGCCACCTGGAACTGGAGCAATTATGGCTGTTGGATCATCTCAGCCTACTGTTGTGGCTACTAAGGATGGTCGGATTGGACGGAAGAACCAAATGCAGGTAAATGTTACTGCTGATCATCGTATAATTTATGGCGCTGATCTGGCTTCATTCTTACAAACCTTGGCCAAGATTATTGAGGACCCCAAAGATCTTACCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0019904 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

105

Amino Acids

11.53

Weight (kDa)

9.21

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxoacid_dh	PF00198	20 - 102	6.2e-26	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0028179)

Species	Orthologous Gene IDs
malus_domestica	MD10G1047200.v1.1
pyrus_communis	pycom10g03330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	125, 208
AjnI	CCWGG	1 cut(s)	118
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	278
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	1 cut(s)	226
BfaI	CTAG	1 cut(s)	313
BfoI	RGCGCY	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	199
BglII	AGATCT	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 208
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	87, 184
BseLI	CCNNNNNNNGG	2 cut(s)	125, 208
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	125, 208
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	6 cut(s)	37, 94, 146, 226, 250, 301
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	6 cut(s)	37, 94, 146, 226, 250, 301
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	67, 163
BstDEI	CTNAG	2 cut(s)	153, 174
BstF5I	GGATG	2 cut(s)	87, 184
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	6 cut(s)	40, 97, 149, 229, 253, 304
BstMBI	GATC	6 cut(s)	37, 94, 146, 226, 250, 301
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 254
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	278
BsuTUI	ATCGAT	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	87, 184
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	57
CviJI	RGCY	5 cut(s)	140, 157, 170, 257, 278
CviKI_1	RGCY	5 cut(s)	140, 157, 170, 257, 278
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	2 cut(s)	153, 174
DpnI	GATC	6 cut(s)	39, 96, 148, 228, 252, 303
DpnII	GATC	6 cut(s)	37, 94, 146, 226, 250, 301
EaeI	YGGCCR	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaiI	YATR	5 cut(s)	8, 55, 137, 236, 243
FbaI	TGATCA	1 cut(s)	226
FokI	GGATG	2 cut(s)	94, 191
FspBI	CTAG	1 cut(s)	313
GlaI	GCGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	67, 163
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 254
HpyF3I	CTNAG	2 cut(s)	153, 174
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	37, 94, 146, 226, 250, 301
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	5 cut(s)	105, 111, 132, 194, 239
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	313
MaeIII	GTNAC	2 cut(s)	23, 217
MalI	GATC	6 cut(s)	39, 96, 148, 228, 252, 303
MboI	GATC	6 cut(s)	37, 94, 146, 226, 250, 301
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	4 cut(s)	17, 50, 132, 237
MluNI	TGGCCA	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	124, 164
MnlI	CCTC	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	137, 254
NdeII	GATC	6 cut(s)	37, 94, 146, 226, 250, 301
NlaIV	GGNNCC	1 cut(s)	294
Ple19I	CGATCG	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
Sau3AI	GATC	6 cut(s)	37, 94, 146, 226, 250, 301
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	4 cut(s)	121, 213, 275, 311
SfaNI	GCATC	1 cut(s)	94
SgeI	CNNG	8 cut(s)	89, 131, 132, 138, 221, 266, 286, 292
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	4 cut(s)	17, 50, 132, 237
SspMI	CTAG	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	67, 163
TaqI	TCGA	2 cut(s)	36, 40
TasI	AATT	4 cut(s)	17, 50, 132, 237
TatI	WGTACW	1 cut(s)	56
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	17
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.