Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0024637

Physical Location & Seq

Genomic Coordinates Forward (+)

4218203 .. 4220520

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGTTTATCCAAGTATTCAATAAATTTTGTCTAGGTGAGAGTCATAATCTAGCCGGGTGTCTAGGTGGACTTAGGCGGGCGCATAAGCAGATCTATGCATCATTTCTTAATATTCAATGCCTAGAGATTACTCGAGCAATGGTCAGCCACTTAACGCTTAGACGGAAAGATCGGAAAGCAAGCCTGTCTGACCATGAATGTGTCAAACTTCCATCACTAGGTCATTTGCCCGGAATGGCCTTGACCATTAAACATTTATCTCCAAACTTAATTAGTCTTCTAATCTGCTTTACCACCCACAGATTTTGTTTTTCCCTTCTTTTTAGGGTAATAAGGGCAACTAAGAGCAATTCCACCCATAAAAAAATGCTAATAGGCCAAATACATCTCTATCCCCAAAACTTAGTAATTGTCAATTTTTTTAAACCCCATTTAATCCACCACTCCCACTCCCCCTCAAAACCTCACCATGTTGTGCTGCTCCCTAAGTACCAACCAATACTCAATCTCCGACCAAGACCTCGACACATGGGGCTTCAAACTCCACCACACGATTGCGGAGCTCAACTTGGACCACCTCAACAAGGTGTTCATGGCCCGTTGGAGCACATGGACTTGCTGCTATGGATGGAGTACAGGAAGACGAAGCGGCCGGTGGTGTTTGCGAGGTCGACGGGAGATGGCCTCCAGTTCAAAAAAAATTTGAACTTTCCTCTGACGCCACGCTGTGTTAGCATGGCGTCATACGGGCCGGTCCATGCCTCTGTCGATTTTGGGCTGGCCTGGAAACCAGCTTGGGCTGGGTACCAGCCTATTTGTTGGGCTGGAGTGGAAAGCCTGGGTGCTAGGCCATTATTTTGGCTGGGTCCCAATATAGATCCAAAAGCAAAGGACAAATTGATTAGGCTAATGGTGGTGTTGCTTCATTTTTGGGTAAATACCCAACGGATATCTATCCCCCAACTAACAAATTTTGAAATTTCCTTTTTAACCCTTGTGAAACTGTTTTTATTAATTTTTTTTAATATATATTGGACTTTATTAATAATAAGGAAAAAAAAAAAAAAAAAAAACGATGGCAGTATCGTAACTCAGTTGAAGCTTGGTGGCACTAGACAAGGATACTCTTCGGATCCTCAGGATCTGGGGATTAATCAATCGTGTCCGTTCATCGTACATCATGTGTCTAGTTTTCGTTATGTACTATTTATATTCAAGTACGATGAACGAACACAATTGATTGATTCTCTAGATCCCCACAAAGAGGATCCAGAGAGGATCCTATTCCGATTCAACTTAATTACAATACTACTACCGCATGCAAAAGTTAACATAATCACGATATTGCCTTATGCTAAATATGGTCTACCAATTATTTTATTTTTCCTAGTAAATGTGGATGGGATAAGACTTGCGTTTCCCATGGGGAATACACATATCCTACTTCTTTCAAATAACTTTTATTTGAAGATCATTTTTATAAATAATCATCTGAATCAGAGATCGTTTAGAAAATTAAAGAAAAAGCTTCAAAACTTTGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0035601 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071704 GO:0071840 GO:0098732 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

516

Amino Acids

59.26

Weight (kDa)

10.08

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024637)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g08440 pycom10g03960 pycom17g07510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1481
Acc65I	GGTACC	1 cut(s)	804
AccB1I	GGYRCC	1 cut(s)	804
AccI	GTMKAC	2 cut(s)	671, 1366
AciI	CCGC	4 cut(s)	76, 558, 649, 1316
AclWI	GGATC	9 cut(s)	872, 1127, 1140, 1149, 1247, 1262, 1273, 1275, 1286
AcoI	YGGCCR	1 cut(s)	650
AcsI	RAATTY	4 cut(s)	23, 700, 970, 978
AcyI	GRCGYC	2 cut(s)	719, 740
AdeI	CACNNNGTG	1 cut(s)	728
AfaI	GTAC	6 cut(s)	491, 635, 806, 1176, 1203, 1220
AfiI	CCNNNNNNNGG	3 cut(s)	218, 584, 1264
AjnI	CCWGG	2 cut(s)	782, 837
AluBI	AGCT	4 cut(s)	563, 794, 1102, 1528
AluI	AGCT	4 cut(s)	563, 794, 1102, 1528
Alw21I	GWGCWC	2 cut(s)	565, 609
AlwI	GGATC	9 cut(s)	872, 1127, 1140, 1149, 1247, 1262, 1273, 1275, 1286
AlwNI	CAGNNNCTG	1 cut(s)	1144
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	8 cut(s)	237, 376, 595, 650, 682, 749, 780, 848
ApeKI	GCWGC	2 cut(s)	478, 619
ApoI	RAATTY	4 cut(s)	23, 700, 970, 978
AseI	ATTAAT	3 cut(s)	1013, 1043, 1152
Asp718I	GGTACC	1 cut(s)	804
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	5 cut(s)	572, 596, 749, 754, 866
AsuC2I	CCSGG	2 cut(s)	55, 231
AsuHPI	GGTGA	2 cut(s)	47, 458
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	3 cut(s)	572, 754, 866
AxyI	CCTNAGG	1 cut(s)	1137
BamHI	GGATCC	3 cut(s)	1132, 1267, 1278
BanI	GGYRCC	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	565
BbsI	GAAGAC	2 cut(s)	269, 647
Bbv12I	GWGCWC	2 cut(s)	565, 609
BbvI	GCAGC	2 cut(s)	465, 606
BccI	CCATC	5 cut(s)	220, 622, 674, 1070, 1394
BciT130I	CCWGG	2 cut(s)	784, 839
BciVI	GTATCC	1 cut(s)	1115
BcnI	CCSGG	2 cut(s)	55, 231
BfuI	GTATCC	1 cut(s)	1115
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	3 cut(s)	479, 620, 650
BlsI	GCNGC	3 cut(s)	480, 621, 651
Bme1390I	CCNGG	4 cut(s)	55, 231, 784, 839
Bme18I	GGWCC	3 cut(s)	572, 754, 866
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	5 cut(s)	572, 596, 749, 754, 866
BmiI	GGNNCC	6 cut(s)	806, 867, 868, 1134, 1269, 1280
BmrFI	CCNGG	4 cut(s)	55, 231, 784, 839
BmsI	GCATC	1 cut(s)	107
BpiI	GAAGAC	2 cut(s)	269, 647
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpmI	CTGGAG	2 cut(s)	671, 846
BpuMI	CCSGG	2 cut(s)	55, 231
BsaBI	GATNNNNATC	1 cut(s)	953
BsaHI	GRCGYC	2 cut(s)	719, 740
BsaJI	CCNNGG	2 cut(s)	838, 1422
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 492, 522
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 584, 1264
Bse118I	RCCGGY	2 cut(s)	652, 751
Bse1I	ACTGG	1 cut(s)	688
Bse21I	CCTNAGG	1 cut(s)	1137
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	953
BseBI	CCWGG	2 cut(s)	784, 839
BseDI	CCNNGG	2 cut(s)	838, 1422
BseGI	GGATG	2 cut(s)	633, 1405
BseJI	GATNNNNATC	1 cut(s)	953
BseLI	CCNNNNNNNGG	3 cut(s)	218, 584, 1264
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	1106, 1151
BseNI	ACTGG	1 cut(s)	688
BseX3I	CGGCCG	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	465, 606
BseYI	CCCAGC	2 cut(s)	800, 862
Bsh1285I	CGRYCG	1 cut(s)	653
BshFI	GGCC	8 cut(s)	239, 378, 597, 652, 684, 751, 782, 850
BshNI	GGYRCC	1 cut(s)	804
BsiEI	CGRYCG	1 cut(s)	653
BsiHKAI	GWGCWC	2 cut(s)	565, 609
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	4 cut(s)	54, 231, 653, 752
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	3 cut(s)	218, 584, 1264
BsmFI	GGGAC	1 cut(s)	852
BsnI	GGCC	8 cut(s)	239, 378, 597, 652, 684, 751, 782, 850
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	565, 609
Bsp19I	CCATGG	1 cut(s)	1422
BspACI	CCGC	4 cut(s)	76, 558, 649, 1316
BspANI	GGCC	8 cut(s)	239, 378, 597, 652, 684, 751, 782, 850
BspCNI	CTCAG	2 cut(s)	1105, 1150
BspLI	GGNNCC	6 cut(s)	806, 867, 868, 1134, 1269, 1280
BspPI	GGATC	9 cut(s)	872, 1127, 1140, 1149, 1247, 1262, 1273, 1275, 1286
BspT107I	GGYRCC	1 cut(s)	804
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	2 cut(s)	652, 751
BsrI	ACTGG	1 cut(s)	688
BssAI	RCCGGY	2 cut(s)	652, 751
BssECI	CCNNGG	2 cut(s)	838, 1422
BssNI	GRCGYC	2 cut(s)	719, 740
BssT1I	CCWWGG	1 cut(s)	1422
Bst2UI	CCWGG	2 cut(s)	784, 839
Bst4CI	ACNGT	1 cut(s)	1005
Bst6I	CTCTTC	1 cut(s)	1132
BstACI	GRCGYC	2 cut(s)	719, 740
BstC8I	GCNNGC	4 cut(s)	78, 181, 780, 1320
BstDEI	CTNAG	7 cut(s)	71, 158, 342, 403, 486, 1092, 1137
BstDSI	CCRYGG	1 cut(s)	1422
BstENI	CCTNNNNNAGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	633, 1405
BstHHI	GCGC	1 cut(s)	82
BstMCI	CGRYCG	1 cut(s)	653
BstMWI	GCNNNNNNNGC	1 cut(s)	732
BstNI	CCWGG	2 cut(s)	784, 839
BstNSI	RCATGY	1 cut(s)	1322
BstSCI	CCNGG	4 cut(s)	53, 229, 782, 837
BstV1I	GCAGC	2 cut(s)	465, 606
BstV2I	GAAGAC	2 cut(s)	269, 647
BstX2I	RGATCY	7 cut(s)	90, 877, 1132, 1141, 1252, 1267, 1278
BstXI	CCANNNNNNTGG	1 cut(s)	858
BstYI	RGATCY	7 cut(s)	90, 877, 1132, 1141, 1252, 1267, 1278
BstZI	CGGCCG	1 cut(s)	650
Bsu36I	CCTNAGG	1 cut(s)	1137
BsuI	GTATCC	1 cut(s)	1115
BsuRI	GGCC	8 cut(s)	239, 378, 597, 652, 684, 751, 782, 850
BtgI	CCRYGG	1 cut(s)	1422
BtsCI	GGATG	2 cut(s)	633, 1405
Cac8I	GCNNGC	4 cut(s)	78, 181, 780, 1320
CaiI	CAGNNNCTG	1 cut(s)	1144
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	2 cut(s)	652, 751
Cfr13I	GGNCC	5 cut(s)	572, 596, 749, 754, 866
CseI	GACGC	2 cut(s)	727, 729
Csp6I	GTAC	6 cut(s)	490, 634, 805, 1175, 1202, 1219
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviQI	GTAC	6 cut(s)	490, 634, 805, 1175, 1202, 1219
DdeI	CTNAG	7 cut(s)	71, 158, 342, 403, 486, 1092, 1137
DraI	TTTAAA	1 cut(s)	424
DraIII	CACNNNGTG	1 cut(s)	728
EaeI	YGGCCR	1 cut(s)	650
EagI	CGGCCG	1 cut(s)	650
Eam1104I	CTCTTC	1 cut(s)	1132
EarI	CTCTTC	1 cut(s)	1132
Ecl136II	GAGCTC	1 cut(s)	563
EclXI	CGGCCG	1 cut(s)	650
Eco130I	CCWWGG	1 cut(s)	1422
Eco24I	GRGCYC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	951
Eco47I	GGWCC	3 cut(s)	572, 754, 866
Eco52I	CGGCCG	1 cut(s)	650
Eco53kI	GAGCTC	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	1137
Eco88I	CYCGRG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	563
EcoNI	CCTNNNNNAGG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	866
EcoRII	CCWGG	2 cut(s)	782, 837
EcoRV	GATATC	1 cut(s)	951
EcoT14I	CCWWGG	1 cut(s)	1422
EcoT22I	ATGCAT	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	1422
FaqI	GGGAC	1 cut(s)	852
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	2 cut(s)	671, 1366
Fnu4HI	GCNGC	3 cut(s)	479, 620, 650
FokI	GGATG	2 cut(s)	640, 1412
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	3 cut(s)	479, 620, 650
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	479, 620, 650
GsaI	CCCAGC	2 cut(s)	804, 866
GsuI	CTGGAG	2 cut(s)	671, 846
HaeIII	GGCC	8 cut(s)	239, 378, 597, 652, 684, 751, 782, 850
HapII	CCGG	4 cut(s)	54, 231, 653, 752
HgaI	GACGC	2 cut(s)	727, 729
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	2 cut(s)	719, 740
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	2 cut(s)	672, 1330
HindII	GTYRAC	2 cut(s)	672, 1330
HindIII	AAGCTT	2 cut(s)	1100, 1526
HinfI	GANTC	5 cut(s)	40, 1244, 1290, 1495, 1541
HpaI	GTTAAC	1 cut(s)	1330
HpaII	CCGG	4 cut(s)	54, 231, 653, 752
HphI	GGTGA	2 cut(s)	47, 458
Hpy166II	GTNNAC	4 cut(s)	68, 672, 1330, 1367
Hpy188I	TCNGA	8 cut(s)	174, 190, 512, 717, 1132, 1289, 1494, 1500
Hpy188III	TCNNGA	4 cut(s)	1139, 1250, 1271, 1339
Hpy8I	GTNNAC	4 cut(s)	68, 672, 1330, 1367
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	1005
HpyCH4V	TGCA	2 cut(s)	98, 1322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	732
HpyF3I	CTNAG	7 cut(s)	71, 158, 342, 403, 486, 1092, 1137
Hsp92I	GRCGYC	2 cut(s)	719, 740
HspAI	GCGC	1 cut(s)	80
KflI	GGGWCCC	1 cut(s)	866
KpnI	GGTACC	1 cut(s)	808
KspAI	GTTAAC	1 cut(s)	1330
LmnI	GCTCC	3 cut(s)	486, 560, 604
Lsp1109I	GCAGC	2 cut(s)	465, 606
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	1087
MboII	GAAGA	4 cut(s)	269, 652, 1119, 1480
MfeI	CAATTG	1 cut(s)	1235
MflI	RGATCY	7 cut(s)	90, 877, 1132, 1141, 1252, 1267, 1278
MhlI	GDGCHC	2 cut(s)	565, 609
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	2 cut(s)	535, 582
Mph1103I	ATGCAT	1 cut(s)	100
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	4 cut(s)	54, 231, 653, 752
MspR9I	CCNGG	4 cut(s)	55, 231, 784, 839
MunI	CAATTG	1 cut(s)	1235
MvaI	CCWGG	2 cut(s)	784, 839
MwoI	GCNNNNNNNGC	1 cut(s)	732
NciI	CCSGG	2 cut(s)	55, 231
NcoI	CCATGG	1 cut(s)	1422
NlaIV	GGNNCC	6 cut(s)	806, 867, 868, 1134, 1269, 1280
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	1322
PaeI	GCATGC	1 cut(s)	1322
PaeR7I	CTCGAG	1 cut(s)	132
PfeI	GAWTC	4 cut(s)	1244, 1290, 1495, 1541
PkrI	GCNGC	3 cut(s)	480, 621, 651
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PpuMI	RGGWCCY	1 cut(s)	866
PshBI	ATTAAT	3 cut(s)	1013, 1043, 1152
PsiI	TTATAA	1 cut(s)	1481
Psp124BI	GAGCTC	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	866
Psp6I	CCWGG	2 cut(s)	782, 837
PspFI	CCCAGC	2 cut(s)	800, 862
PspGI	CCWGG	2 cut(s)	782, 837
PspN4I	GGNNCC	6 cut(s)	806, 867, 868, 1134, 1269, 1280
PspPI	GGNCC	5 cut(s)	572, 596, 749, 754, 866
PspPPI	RGGWCCY	1 cut(s)	866
PspXI	VCTCGAGB	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	1144
PsuI	RGATCY	7 cut(s)	90, 877, 1132, 1141, 1252, 1267, 1278
RsaI	GTAC	6 cut(s)	491, 635, 806, 1176, 1203, 1220
RsaNI	GTAC	6 cut(s)	490, 634, 805, 1175, 1202, 1219
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	565
SalI	GTCGAC	1 cut(s)	670
SatI	GCNGC	3 cut(s)	479, 620, 650
Sau96I	GGNCC	5 cut(s)	572, 596, 749, 754, 866
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	4 cut(s)	55, 231, 784, 839
SduI	GDGCHC	2 cut(s)	565, 609
SfaNI	GCATC	1 cut(s)	107
Sfr274I	CTCGAG	1 cut(s)	132
SinI	GGWCC	3 cut(s)	572, 754, 866
SlaI	CTCGAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
SphI	GCATGC	1 cut(s)	1322
SsiI	CCGC	4 cut(s)	76, 558, 649, 1316
SspI	AATATT	1 cut(s)	112
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	4 cut(s)	53, 229, 782, 837
StyI	CCWWGG	1 cut(s)	1422
TaaI	ACNGT	1 cut(s)	1005
TaqI	TCGA	4 cut(s)	133, 523, 671, 768
TatI	WGTACW	2 cut(s)	633, 1201
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	4 cut(s)	1244, 1290, 1495, 1541
TseI	GCWGC	2 cut(s)	478, 619
TspDTI	ATGAA	5 cut(s)	210, 581, 914, 1159, 1239
TspGWI	ACGGA	3 cut(s)	178, 961, 1155
VpaK11BI	GGWCC	3 cut(s)	572, 754, 866
VspI	ATTAAT	3 cut(s)	1013, 1043, 1152
XagI	CCTNNNNNAGG	1 cut(s)	582
XapI	RAATTY	4 cut(s)	23, 700, 970, 978
XbaI	TCTAGA	1 cut(s)	1249
XceI	RCATGY	1 cut(s)	1322
XhoI	CTCGAG	1 cut(s)	132
XmiI	GTMKAC	2 cut(s)	671, 1366
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.