Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024637

Physical Location & Seq

Genomic Coordinates Forward (+)

5477136 .. 5477411

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACGTCATACGGGCCGGTCCATGCCTCTGTCGATTTTAGGCTGGCCTGGAGACCAGCTTGGGCTGGATGCCAGCCTATCTGCTGGGCTGGAGTGGAATGGCTAGATGCCGGGCCAATAATTTGGCTGGGTGCCGGCCTATTTGTTCTCCGGTGGAGGTGCTCTCAGAAAATTAAGGTTGAAGACAACCGTACATACATAGCATGTGTAATGATAATTATTTTGAAAATCTTCGAAATCCTTATTTATTTACTCAAATTCATTTCTAATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0035601 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071704 GO:0071840 GO:0098732 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

92

Amino Acids

10.44

Weight (kDa)

8.82

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024637)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g08440 pycom10g03960 pycom17g07510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	182, 226
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	46
AoxI	GGCC	4 cut(s)	14, 45, 113, 136
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	14, 19, 113
AsuC2I	CCSGG	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	49, 112
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	14, 19, 113
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	49, 112
BmsI	GCATC	2 cut(s)	59, 97
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	2 cut(s)	70, 111
Bpu14I	TTCGAA	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	150
Bse118I	RCCGGY	2 cut(s)	16, 134
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	179
BseYI	CCCAGC	2 cut(s)	84, 127
BshFI	GGCC	4 cut(s)	16, 47, 115, 138
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	4 cut(s)	17, 111, 135, 151
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	4 cut(s)	16, 47, 115, 138
Bso31I	GGTCTC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	164
BspANI	GGCC	4 cut(s)	16, 47, 115, 138
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	133
BspT104I	TTCGAA	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	46
BsrFI	RCCGGY	2 cut(s)	16, 134
BssAI	RCCGGY	2 cut(s)	16, 134
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	45, 74, 136
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	47, 110
BstV2I	GAAGAC	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	16, 47, 115, 138
BtsCI	GGATG	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	45, 74, 136
Cfr10I	RCCGGY	2 cut(s)	16, 134
Cfr13I	GGNCC	3 cut(s)	14, 19, 113
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	2 cut(s)	23, 204
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	26, 207
FaiI	YATR	5 cut(s)	10, 24, 196, 200, 205
FatI	CATG	2 cut(s)	22, 203
FokI	GGATG	1 cut(s)	81
FspBI	CTAG	1 cut(s)	104
GsaI	CCCAGC	2 cut(s)	88, 131
GsuI	CTGGAG	2 cut(s)	70, 111
HaeIII	GGCC	4 cut(s)	16, 47, 115, 138
HapII	CCGG	4 cut(s)	17, 111, 135, 151
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	26, 207
HpaII	CCGG	4 cut(s)	17, 111, 135, 151
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	5
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	26, 207
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	59, 97
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	5
MboII	GAAGA	2 cut(s)	194, 223
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	5 cut(s)	120, 171, 216, 257, 268
MnlI	CCTC	2 cut(s)	37, 150
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	1 cut(s)	174
MspI	CCGG	4 cut(s)	17, 111, 135, 151
MspR9I	CCNGG	2 cut(s)	49, 112
MvaI	CCWGG	1 cut(s)	49
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	26, 207
NlaIV	GGNNCC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	47
PspFI	CCCAGC	2 cut(s)	84, 127
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	3 cut(s)	14, 19, 113
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	174
Sau96I	GGNCC	3 cut(s)	14, 19, 113
ScrFI	CCNGG	2 cut(s)	49, 112
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	4 cut(s)	8, 61, 161, 180
SfaNI	GCATC	2 cut(s)	59, 97
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	5 cut(s)	120, 171, 216, 257, 268
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	47, 110
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	33, 234
TasI	AATT	5 cut(s)	120, 171, 216, 257, 268
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.