Replication factor C subunit
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom10g04070 |
| rosa_chinensis | RchiOBHm_Chr3g0494061 |
| rosa_multiflora | Rmu_sc0003412.1_g000010 |
| rosa_rugosa | Rorug07G0014300 |
| rosa_samantha | Rh3AG313500 Rh4AG150200 |
| rosa_wichuraiana | Rw3G027440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 152, 236, 270, 280 |
| AcsI | RAATTY | 1 cut(s) | 361 |
| AfaI | GTAC | 1 cut(s) | 228 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 158 |
| AjnI | CCWGG | 1 cut(s) | 253 |
| AluBI | AGCT | 3 cut(s) | 53, 65, 185 |
| AluI | AGCT | 3 cut(s) | 53, 65, 185 |
| AoxI | GGCC | 1 cut(s) | 267 |
| ApeKI | GCWGC | 2 cut(s) | 182, 287 |
| ApoI | RAATTY | 1 cut(s) | 361 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 102, 135 |
| BbvI | GCAGC | 2 cut(s) | 194, 274 |
| BccI | CCATC | 4 cut(s) | 26, 98, 152, 310 |
| BciT130I | CCWGG | 1 cut(s) | 255 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BfaI | CTAG | 1 cut(s) | 155 |
| BisI | GCNGC | 3 cut(s) | 183, 270, 288 |
| BlsI | GCNGC | 3 cut(s) | 184, 271, 289 |
| Bme1390I | CCNGG | 1 cut(s) | 255 |
| BmrFI | CCNGG | 1 cut(s) | 255 |
| BmrI | ACTGGG | 2 cut(s) | 327, 391 |
| BmsI | GCATC | 3 cut(s) | 151, 223, 298 |
| BmuI | ACTGGG | 2 cut(s) | 327, 391 |
| BsaAI | YACGTR | 1 cut(s) | 230 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 158 |
| Bse1I | ACTGG | 2 cut(s) | 322, 386 |
| BseBI | CCWGG | 1 cut(s) | 255 |
| BseGI | GGATG | 2 cut(s) | 52, 106 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseNI | ACTGG | 2 cut(s) | 322, 386 |
| BseXI | GCAGC | 2 cut(s) | 194, 274 |
| BseYI | CCCAGC | 1 cut(s) | 410 |
| BsgI | GTGCAG | 1 cut(s) | 77 |
| BshFI | GGCC | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BsnI | GGCC | 1 cut(s) | 269 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspACI | CCGC | 4 cut(s) | 152, 236, 270, 280 |
| BspANI | GGCC | 1 cut(s) | 269 |
| BspHI | TCATGA | 1 cut(s) | 75 |
| BsrI | ACTGG | 2 cut(s) | 322, 386 |
| BssMI | GATC | 1 cut(s) | 3 |
| Bst2UI | CCWGG | 1 cut(s) | 255 |
| Bst4CI | ACNGT | 1 cut(s) | 107 |
| BstBAI | YACGTR | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 1 cut(s) | 171 |
| BstDEI | CTNAG | 1 cut(s) | 273 |
| BstF5I | GGATG | 2 cut(s) | 52, 106 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 179, 416 |
| BstNI | CCWGG | 1 cut(s) | 255 |
| BstSCI | CCNGG | 1 cut(s) | 253 |
| BstV1I | GCAGC | 2 cut(s) | 194, 274 |
| BsuRI | GGCC | 1 cut(s) | 269 |
| BtsCI | GGATG | 2 cut(s) | 52, 106 |
| Cac8I | GCNNGC | 1 cut(s) | 171 |
| CciI | TCATGA | 1 cut(s) | 75 |
| Csp6I | GTAC | 1 cut(s) | 227 |
| CviAII | CATG | 1 cut(s) | 76 |
| CviJI | RGCY | 4 cut(s) | 53, 65, 185, 269 |
| CviKI_1 | RGCY | 4 cut(s) | 53, 65, 185, 269 |
| CviQI | GTAC | 1 cut(s) | 227 |
| DdeI | CTNAG | 1 cut(s) | 273 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| EcoRII | CCWGG | 1 cut(s) | 253 |
| FaeI | CATG | 1 cut(s) | 79 |
| FaiI | YATR | 4 cut(s) | 77, 135, 164, 199 |
| FatI | CATG | 1 cut(s) | 75 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 3 cut(s) | 183, 270, 288 |
| FokI | GGATG | 2 cut(s) | 59, 113 |
| Fsp4HI | GCNGC | 3 cut(s) | 183, 270, 288 |
| FspBI | CTAG | 1 cut(s) | 155 |
| GluI | GCNGC | 3 cut(s) | 183, 270, 288 |
| GsaI | CCCAGC | 1 cut(s) | 414 |
| HaeIII | GGCC | 1 cut(s) | 269 |
| Hin1II | CATG | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 4 cut(s) | 189, 307, 348, 370 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 76, 98 |
| HpyAV | CCTTC | 1 cut(s) | 200 |
| HpyCH4III | ACNGT | 1 cut(s) | 107 |
| HpyCH4IV | ACGT | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 1 cut(s) | 58 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 179, 416 |
| HpyF3I | CTNAG | 1 cut(s) | 273 |
| HpySE526I | ACGT | 1 cut(s) | 229 |
| Hsp92II | CATG | 1 cut(s) | 79 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LpnPI | CCDG | 9 cut(s) | 29, 44, 83, 183, 240, 267, 303, 367, 396 |
| Lsp1109I | GCAGC | 2 cut(s) | 194, 274 |
| LweI | GCATC | 3 cut(s) | 151, 223, 298 |
| MaeI | CTAG | 1 cut(s) | 155 |
| MaeII | ACGT | 1 cut(s) | 229 |
| MaeIII | GTNAC | 2 cut(s) | 244, 313 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 2 cut(s) | 13, 365 |
| MluCI | AATT | 3 cut(s) | 37, 361, 388 |
| MnlI | CCTC | 2 cut(s) | 130, 370 |
| MseI | TTAA | 1 cut(s) | 427 |
| MspR9I | CCNGG | 1 cut(s) | 255 |
| MvaI | CCWGG | 1 cut(s) | 255 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 179, 416 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 1 cut(s) | 79 |
| NmuCI | GTSAC | 2 cut(s) | 244, 313 |
| PagI | TCATGA | 1 cut(s) | 75 |
| PfoI | TCCNGGA | 1 cut(s) | 253 |
| PkrI | GCNGC | 3 cut(s) | 184, 271, 289 |
| Ppu21I | YACGTR | 1 cut(s) | 230 |
| Psp6I | CCWGG | 1 cut(s) | 253 |
| PspFI | CCCAGC | 1 cut(s) | 410 |
| PspGI | CCWGG | 1 cut(s) | 253 |
| RsaI | GTAC | 1 cut(s) | 228 |
| RsaNI | GTAC | 1 cut(s) | 227 |
| SaqAI | TTAA | 1 cut(s) | 427 |
| SatI | GCNGC | 3 cut(s) | 183, 270, 288 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| ScrFI | CCNGG | 1 cut(s) | 255 |
| SetI | ASST | 4 cut(s) | 55, 67, 187, 232 |
| SfaNI | GCATC | 3 cut(s) | 151, 223, 298 |
| Sse9I | AATT | 3 cut(s) | 37, 361, 388 |
| SsiI | CCGC | 4 cut(s) | 152, 236, 270, 280 |
| SspMI | CTAG | 1 cut(s) | 155 |
| StyD4I | CCNGG | 1 cut(s) | 253 |
| TaaI | ACNGT | 1 cut(s) | 107 |
| TaiI | ACGT | 1 cut(s) | 232 |
| TaqI | TCGA | 1 cut(s) | 145 |
| TasI | AATT | 3 cut(s) | 37, 361, 388 |
| TauI | GCSGC | 1 cut(s) | 272 |
| Tru1I | TTAA | 1 cut(s) | 427 |
| Tru9I | TTAA | 1 cut(s) | 427 |
| TseFI | GTSAC | 2 cut(s) | 244, 313 |
| TseI | GCWGC | 2 cut(s) | 182, 287 |
| Tsp45I | GTSAC | 2 cut(s) | 244, 313 |
| TspDTI | ATGAA | 4 cut(s) | 63, 64, 92, 372 |
| XapI | RAATTY | 1 cut(s) | 361 |
| XspI | CTAG | 1 cut(s) | 155 |