Rh4AG150200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0019826
Physical Location & Seq
Reverse (-)
37843824 .. 37859501
15678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG150200.1

Sequence Viewer

Length: 765 bp
ATGGATCTTGCTCTGAACAGTGAAGGAGATGAGGCTATTTTTAACGATCATGCTCTTACAAAAGTGCTACATCGCGATCAAACGTCGGCAAATTTTCAAGACATCAAGGAGTCCTTGGAGTATATGCACTTTCAGAATTTTGCTTTACGTTCAAAATTGCTCGAAGAAATTCGTCAACTGCGAGTGGGTCCTAAGAACCCATGTGAGGTTGCTGGTACTTCTCAAGTAGGAGGTTTGCCATCACTGAGATTGTCGTCATTTCCGAAGACGTCGTCTTTGTCACCACCAGCATTGGTACTCCCCCCAGTTTCCCTCGTGAGCTCAGCTTTGGGTAACTTTCATACTACAATTCCTGACCTATCAATATTACCTTTATATAGCTCGTTTATGACTGGTTCTATGAATGGTGGCCCAAATACACATATGATGAGTATGGAATTACCTAATTTGCTTGGTTCAATGGTCTCTTTGCCGATGGGCTACTCGACTGGCATGACTTTGAGTAGTGGACCATTGATGATGGAACCTGTTTCTCAATTTTATTCAGCACCACAATACTTTCATATGCCTAATATAAGTTCACAGCCACACTATGTTGCTCATAATATTCCATTGCCACACCCACAAAGTCATCAAAGCTCATTCAATTTGACATATTCTGGACCTTACCCTGTGTCTTATATTGACTTTATGCCTACTACATCACAACTGTGCTCCCAAGCCCCGCCCTACTTCCCTAATGTGAGCCACCTTCGATCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

27.89

Weight (kDa)

6.23

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019826)

Species Orthologous Gene IDs
pyrus_communis pycom10g04070
rosa_chinensis RchiOBHm_Chr3g0494061
rosa_multiflora Rmu_sc0003412.1_g000010
rosa_rugosa Rorug07G0014300
rosa_samantha Rh3AG313500 Rh4AG150200
rosa_wichuraiana Rw3G027440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 272
AccII CGCG 1 cut(s) 75
AciI CCGC 1 cut(s) 725
AclWI GGATC 2 cut(s) 12, 750
AcsI RAATTY 3 cut(s) 91, 136, 168
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 2 cut(s) 217, 297
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 4 cut(s) 98, 153, 459, 646
AleI CACNNNNGTG 1 cut(s) 709
AluBI AGCT 4 cut(s) 321, 326, 381, 639
AluI AGCT 4 cut(s) 321, 326, 381, 639
Alw21I GWGCWC 2 cut(s) 323, 716
Alw26I GTCTC 1 cut(s) 469
AlwI GGATC 2 cut(s) 12, 750
AoxI GGCC 1 cut(s) 409
ApoI RAATTY 3 cut(s) 91, 136, 168
ArsI GACNNNNNNTTYG 4 cut(s) 257, 259, 289, 291
Asp700I GAANNNNTTC 1 cut(s) 168
AspS9I GGNCC 4 cut(s) 188, 410, 509, 662
AsuHPI GGTGA 1 cut(s) 273
AvaII GGWCC 3 cut(s) 188, 509, 662
BanII GRGCYC 1 cut(s) 323
BauI CACGAG 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 2 cut(s) 323, 716
BccI CCATC 3 cut(s) 247, 469, 514
BcoDI GTCTC 1 cut(s) 469
BlpI GCTNAGC 1 cut(s) 322
Bme18I GGWCC 3 cut(s) 188, 509, 662
BmgT120I GGNCC 4 cut(s) 188, 410, 509, 662
BmiI GGNNCC 2 cut(s) 189, 525
BmrI ACTGGG 1 cut(s) 299
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 3 cut(s) 305, 397, 493
Bse3DI GCAATG 1 cut(s) 611
BseDI CCNNGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 611
BseMII CTCAG 2 cut(s) 236, 336
BseNI ACTGG 3 cut(s) 305, 397, 493
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 323, 716
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 469
BsnI GGCC 1 cut(s) 411
Bso31I GGTCTC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 323, 716
Bsp143I GATC 4 cut(s) 4, 46, 76, 755
Bsp1720I GCTNAGC 1 cut(s) 322
Bsp68I TCGCGA 1 cut(s) 75
BspACI CCGC 1 cut(s) 725
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 2 cut(s) 237, 335
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 189, 525
BspPI GGATC 2 cut(s) 12, 750
BspTNI GGTCTC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 611
BsrI ACTGG 3 cut(s) 305, 397, 493
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 4, 46, 76, 755
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 20, 711
BstACI GRCGYC 1 cut(s) 269
BstDEI CTNAG 3 cut(s) 192, 245, 322
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 4 cut(s) 7, 49, 79, 758
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 4 cut(s) 4, 46, 76, 755
BstUI CGCG 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 25, 242
BtuMI TCGCGA 1 cut(s) 75
Cfr13I GGNCC 4 cut(s) 188, 410, 509, 662
Csp6I GTAC 2 cut(s) 216, 296
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 3 cut(s) 50, 201, 493
CviQI GTAC 2 cut(s) 216, 296
DdeI CTNAG 3 cut(s) 192, 245, 322
DpnI GATC 4 cut(s) 6, 48, 78, 757
DpnII GATC 4 cut(s) 4, 46, 76, 755
Ecl136II GAGCTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 3 cut(s) 188, 509, 662
Eco53kI GAGCTC 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 3 cut(s) 53, 204, 496
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 3 cut(s) 49, 200, 492
FauI CCCGC 1 cut(s) 732
FauNDI CATATG 2 cut(s) 423, 564
FriOI GRGCYC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 3 cut(s) 53, 204, 496
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 1 cut(s) 110
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 3 cut(s) 176, 509, 581
Hpy188I TCNGA 3 cut(s) 15, 135, 264
Hpy188III TCNNGA 5 cut(s) 74, 98, 316, 353, 660
Hpy8I GTNNAC 3 cut(s) 176, 509, 581
Hpy99I CGWCG 2 cut(s) 88, 274
HpyAV CCTTC 2 cut(s) 17, 761
HpyCH4III ACNGT 2 cut(s) 20, 711
HpyCH4IV ACGT 3 cut(s) 83, 148, 269
HpyCH4V TGCA 1 cut(s) 127
HpyF3I CTNAG 3 cut(s) 192, 245, 322
HpySE526I ACGT 3 cut(s) 83, 148, 269
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 3 cut(s) 53, 204, 496
Kzo9I GATC 4 cut(s) 4, 46, 76, 755
LmnI GCTCC 1 cut(s) 719
LpnPI CCDG 9 cut(s) 198, 300, 318, 366, 378, 474, 540, 645, 684
MaeII ACGT 3 cut(s) 83, 148, 269
MaeIII GTNAC 2 cut(s) 279, 332
MalI GATC 4 cut(s) 6, 48, 78, 757
MboI GATC 4 cut(s) 4, 46, 76, 755
MboII GAAGA 2 cut(s) 176, 277
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 323, 716
MluCI AATT 9 cut(s) 91, 136, 155, 168, 348, 437, 445, 536, 646
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 4 cut(s) 25, 199, 224, 323
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 709
MvnI CGCG 1 cut(s) 75
NdeI CATATG 2 cut(s) 423, 564
NdeII GATC 4 cut(s) 4, 46, 76, 755
NlaIII CATG 3 cut(s) 53, 204, 496
NlaIV GGNNCC 2 cut(s) 189, 525
NmuCI GTSAC 1 cut(s) 279
NruI TCGCGA 1 cut(s) 75
OliI CACNNNNGTG 1 cut(s) 709
PcsI WCGNNNNNNNCGW 2 cut(s) 178, 260
PdmI GAANNNNTTC 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 271
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 189, 525
PspPI GGNCC 4 cut(s) 188, 410, 509, 662
PspPPI RGGWCCY 1 cut(s) 188
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 271
RruI TCGCGA 1 cut(s) 75
RsaI GTAC 2 cut(s) 217, 297
RsaNI GTAC 2 cut(s) 216, 296
RseI CAYNNNNRTG 1 cut(s) 709
SacI GAGCTC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 4 cut(s) 4, 46, 76, 755
Sau96I GGNCC 4 cut(s) 188, 410, 509, 662
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 2 cut(s) 323, 716
SinI GGWCC 3 cut(s) 188, 509, 662
SmiMI CAYNNNNRTG 1 cut(s) 709
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 9 cut(s) 91, 136, 155, 168, 348, 437, 445, 536, 646
SsiI CCGC 1 cut(s) 725
SspI AATATT 2 cut(s) 366, 607
SstI GAGCTC 1 cut(s) 323
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 20, 711
TaiI ACGT 3 cut(s) 86, 151, 272
TaqI TCGA 3 cut(s) 162, 485, 754
TasI AATT 9 cut(s) 91, 136, 155, 168, 348, 437, 445, 536, 646
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 25, 249
TseFI GTSAC 1 cut(s) 279
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 3 cut(s) 329, 416, 551
TspRI CASTG 2 cut(s) 25, 249
Tth111I GACNNNGTC 1 cut(s) 271
VpaK11BI GGWCC 3 cut(s) 188, 509, 662
XapI RAATTY 3 cut(s) 91, 136, 168
XmnI GAANNNNTTC 1 cut(s) 168
ZraI GACGTC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.