pycom10g10080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0029234
Physical Location & Seq
Reverse (-)
13347014 .. 13347598
585 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g10080.2

Sequence Viewer

Length: 366 bp
ATGGCACCCAAAGTTGCTCGAATTCAATCTCATTGTGAGACTGGTGAGGGGATTTTCACCATGCGCCGTCTTCTTAATGGCCTTCATCGTCCTCGGGTAGGCCTGCACACTGAACTCTTCTTCGAGGAGGGAGAAGTGCACTCTTTGGGACCTGCATGGATTTCTCAGATCTCTGTTGCCATTGAAAAAAATATGCCCAAGGAGAAATCAGCTTCTATAGTATTCTTAGAAAGATCAACATTAAAGACTTTGGTAAGACTTGTGGAAAAAGGCTCTGCTATGGAGGCAATGATCACAGAGGTGTCTTCTGAAAATGAGAGGTTGGAAGAGAAACTATCAAGGGACCTTATGCAACCAGGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

122

Amino Acids

13.65

Weight (kDa)

6.43

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029234)

Species Orthologous Gene IDs
pyrus_communis pycom03g10800 pycom10g10080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 2 cut(s) 26, 185
AjnI CCWGG 1 cut(s) 355
AleI CACNNNNGTG 1 cut(s) 299
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 2 cut(s) 79, 100
ApaLI GTGCAC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 21
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 149, 343
AsuHPI GGTGA 2 cut(s) 49, 56
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 2 cut(s) 149, 343
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 62, 297
Bbv12I GWGCWC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 357
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 364
BfmI CTRYAG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 160
BglII AGATCT 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 2 cut(s) 149, 343
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 149, 343
BmiI GGNNCC 3 cut(s) 6, 150, 344
BmrFI CCNGG 1 cut(s) 357
BpiI GAAGAC 2 cut(s) 62, 297
BsaJI CCNNGG 2 cut(s) 92, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 92, 198
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 2 cut(s) 81, 102
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 93
BslFI GGGAC 2 cut(s) 162, 356
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 162, 356
BsnI GGCC 2 cut(s) 81, 102
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 168, 233, 291
BspANI GGCC 2 cut(s) 81, 102
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 6, 150, 344
BspMI ACCTGC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 92, 198
BssMI GATC 3 cut(s) 168, 233, 291
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 357
Bst6I CTCTTC 2 cut(s) 122, 321
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 165, 226
BstENI CCTNNNNNAGG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 3 cut(s) 171, 236, 294
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 168, 233, 291
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 141
BstV2I GAAGAC 2 cut(s) 62, 297
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 2 cut(s) 81, 102
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 104
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 149, 343
CviAII CATG 2 cut(s) 61, 156
CviJI RGCY 4 cut(s) 81, 102, 212, 273
CviKI_1 RGCY 4 cut(s) 81, 102, 212, 273
DdeI CTNAG 2 cut(s) 165, 226
DpnI GATC 3 cut(s) 170, 235, 293
DpnII GATC 3 cut(s) 168, 233, 291
Eam1104I CTCTTC 2 cut(s) 122, 321
EarI CTCTTC 2 cut(s) 122, 321
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 149, 343
Eco88I CYCGRG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 96
EcoO109I RGGNCCY 2 cut(s) 149, 343
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 64, 159
FaiI YATR 6 cut(s) 62, 157, 194, 218, 281, 350
FaqI GGGAC 2 cut(s) 162, 356
FatI CATG 2 cut(s) 60, 155
FbaI TGATCA 1 cut(s) 291
FspBI CTAG 1 cut(s) 364
GlaI GCGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 81, 102
HhaI GCGC 1 cut(s) 66
Hin1II CATG 2 cut(s) 64, 159
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 1 cut(s) 360
HphI GGTGA 2 cut(s) 49, 56
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 168, 310
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 106, 139, 155, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 165, 226
Hsp92II CATG 2 cut(s) 64, 159
HspAI GCGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 3 cut(s) 168, 233, 291
LpnPI CCDG 4 cut(s) 27, 116, 165, 342
MaeI CTAG 1 cut(s) 364
MalI GATC 3 cut(s) 170, 235, 293
MboI GATC 3 cut(s) 168, 233, 291
MboII GAAGA 5 cut(s) 62, 109, 112, 297, 338
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 7 cut(s) 40, 102, 118, 121, 277, 292, 312
MseI TTAA 2 cut(s) 75, 242
MslI CAYNNNNRTG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 3 cut(s) 168, 233, 291
NlaIII CATG 2 cut(s) 64, 159
NlaIV GGNNCC 3 cut(s) 6, 150, 344
OliI CACNNNNGTG 1 cut(s) 299
PceI AGGCCT 1 cut(s) 102
PfeI GAWTC 1 cut(s) 360
PpuMI RGGWCCY 2 cut(s) 149, 343
Psp5II RGGWCCY 2 cut(s) 149, 343
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 3 cut(s) 6, 150, 344
PspPI GGNCC 2 cut(s) 149, 343
PspPPI RGGWCCY 2 cut(s) 149, 343
PsuI RGATCY 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 2 cut(s) 75, 242
Sau3AI GATC 3 cut(s) 168, 233, 291
Sau96I GGNCC 2 cut(s) 149, 343
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 141
SetI ASST 5 cut(s) 154, 214, 303, 323, 348
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 2 cut(s) 149, 343
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 1 cut(s) 21
SseBI AGGCCT 1 cut(s) 102
SspMI CTAG 1 cut(s) 364
StuI AGGCCT 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 2 cut(s) 19, 123
TasI AATT 1 cut(s) 21
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 2 cut(s) 75, 242
Tru9I TTAA 2 cut(s) 75, 242
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 115
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 149, 343
XagI CCTNNNNNAGG 1 cut(s) 96
XapI RAATTY 1 cut(s) 21
XspI CTAG 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.