pycom10g10280

glomerular visceral epithelial cell migration

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0019633
Physical Location & Seq
Forward (+)
13587377 .. 13589600
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGAGGTGAAGCTGATAAATGTGCTGCAAGTCCTTTTCTACTCCGATCACCCTGAACAAATGGATATTGACCTTTTCACTTTGTGGGCTGAGGAGACACTAATTGAAGACAATTTGGTTTTGGACATTCTTTTCCTTGCTTATTATGAGTCATTTTGTACTTGTAATGGTGAAAGGTGGAAAACTTTGTGCTTGCTCTATAAGGGAATTTTATCTGGGTCTTATAACTTTGAAAAGCTGGCAGTATCAACTGAAGCACTACGTTCTTCTTATCAAACTAAAGTCCAGCTGCTTCTAATCCTTATAGAAACCCTGGACCTGGAAAGTCTTCTCCAGATGGTTCATGATGCAATCCCTTTCAGGGGCCTGCTGACGGCTACCGTAGTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup188

Protein Analysis

131

Amino Acids

14.96

Weight (kDa)

4.4

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019633)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10843 AT4G10843 AT4G10843 AT4G10843 AT5G37793
malus_domestica MD10G1119400.v1.1
pyrus_communis pycom10g10280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 4 cut(s) 319, 361, 362, 373
AgsI TTSAA 2 cut(s) 107, 233
AjnI CCWGG 2 cut(s) 312, 318
AluBI AGCT 3 cut(s) 13, 238, 289
AluI AGCT 3 cut(s) 13, 238, 289
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 25, 289
ApoI RAATTY 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 316, 364
AsuHPI GGTGA 3 cut(s) 19, 41, 182
AvaII GGWCC 1 cut(s) 316
BbsI GAAGAC 2 cut(s) 114, 320
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 12, 276
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 2 cut(s) 314, 320
BcoDI GTCTC 1 cut(s) 89
BisI GCNGC 2 cut(s) 26, 290
BlsI GCNGC 2 cut(s) 27, 291
Bme1390I CCNGG 2 cut(s) 314, 320
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 316, 364
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 2 cut(s) 314, 320
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 2 cut(s) 114, 320
BpmI CTGGAG 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 4 cut(s) 319, 361, 362, 373
BseBI CCWGG 2 cut(s) 314, 320
BseDI CCNNGG 1 cut(s) 312
BseLI CCNNNNNNNGG 4 cut(s) 319, 361, 362, 373
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 12, 276
BshFI GGCC 1 cut(s) 366
BslI CCNNNNNNNGG 4 cut(s) 319, 361, 362, 373
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 314, 320
Bst4CI ACNGT 1 cut(s) 382
BstC8I GCNNGC 3 cut(s) 194, 240, 368
BstDEI CTNAG 1 cut(s) 90
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 314, 320
BstSCI CCNGG 2 cut(s) 312, 318
BstV1I GCAGC 2 cut(s) 12, 276
BstV2I GAAGAC 2 cut(s) 114, 320
BsuRI GGCC 1 cut(s) 366
Cac8I GCNNGC 3 cut(s) 194, 240, 368
CciI TCATGA 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 316, 364
Csp6I GTAC 1 cut(s) 159
CviAII CATG 1 cut(s) 344
CviJI RGCY 6 cut(s) 13, 89, 238, 289, 366, 377
CviKI_1 RGCY 6 cut(s) 13, 89, 238, 289, 366, 377
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 312, 318
FaeI CATG 1 cut(s) 347
FaiI YATR 5 cut(s) 147, 201, 225, 305, 345
FatI CATG 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 26, 290
Fsp4HI GCNGC 2 cut(s) 26, 290
GluI GCNGC 2 cut(s) 26, 290
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 366
Hin1II CATG 1 cut(s) 347
HinfI GANTC 1 cut(s) 149
HphI GGTGA 3 cut(s) 19, 41, 182
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 334, 344
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 28, 350
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 1 cut(s) 347
Kzo9I GATC 1 cut(s) 46
Lsp1109I GCAGC 2 cut(s) 12, 276
LweI GCATC 1 cut(s) 337
MaeII ACGT 1 cut(s) 262
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 119, 258, 320
MluCI AATT 3 cut(s) 102, 112, 207
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 314, 320
MvaI CCWGG 2 cut(s) 314, 320
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 1 cut(s) 365
PagI TCATGA 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 27, 291
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PsiI TTATAA 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 312, 318
PspGI CCWGG 2 cut(s) 312, 318
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 2 cut(s) 316, 364
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SatI GCNGC 2 cut(s) 26, 290
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 316, 364
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 314, 320
SetI ASST 8 cut(s) 9, 15, 75, 179, 240, 265, 291, 321
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 1 cut(s) 316
Sse9I AATT 3 cut(s) 102, 112, 207
StyD4I CCNGG 2 cut(s) 312, 318
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 265
TasI AATT 3 cut(s) 102, 112, 207
TatI WGTACW 1 cut(s) 158
TseI GCWGC 2 cut(s) 25, 289
TspDTI ATGAA 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.