Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0016178

Physical Location & Seq

Genomic Coordinates Forward (+)

17793625 .. 17795500

Gene Structure 1876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g14410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCCGCCAGCAATCCGTCGCAGTTGCTCCCATCAGAGTTGATCGACCCGTGCATAGGGTCGAAGATTTGGGTGATAATGAAGGGAGACAAGGAGCTCGTAGGGACTCTGAGGGGTTTCGATGTCTACGTCAACATGGTACTGGAAGACGTCACTGAATATGAGATTACTCCCGAAGGAAGACGTATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAATATTGCCATTCTGGTCCCTGGCGGCTCACCTGAAGCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0030532 GO:0032991 GO:0033993 GO:0034641 GO:0034655 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0097305 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

89

Amino Acids

9.6

Weight (kDa)

4.46

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	16 - 81	4.3e-20	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48870
fragaria_vesca	FvH4_1g24390
malus_domestica	MD05G1178700.v1.1 MD10G1167200.v1.1
prunus_persica	Prupe.8G205100_v2.0.a1
pyrus_communis	pycom05g16470 pycom10g14410
rosa_chinensis	RchiOBHm_Chr2g0121221
rosa_multiflora	Rmu_sc0000079.1_g000038
rosa_roxburghii	Rroxscaffold_2G00122500
rosa_rugosa	Rorug02G0232900
rosa_samantha	Rh2AG289800 Rh2BG300500 Rh2CG279200
rosa_wichuraiana	Rw2G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	3 cut(s)	6, 246, 260
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	2 cut(s)	97, 196
AluI	AGCT	2 cut(s)	97, 196
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	85, 243
AvaII	GGWCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	153, 187
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	243
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	81
BisI	GCNGC	2 cut(s)	6, 247
BlsI	GCNGC	2 cut(s)	7, 248
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	243
BpiI	GAAGAC	2 cut(s)	153, 187
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	118, 224
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	2 cut(s)	118, 224
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	42, 199
BspACI	CCGC	3 cut(s)	6, 246, 260
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	42, 199
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	110
BstKTI	GATC	2 cut(s)	45, 202
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	42, 199
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	153, 187
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	4 cut(s)	5, 97, 196, 249
CviKI_1	RGCY	4 cut(s)	5, 97, 196, 249
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	44, 201
DpnII	GATC	2 cut(s)	42, 199
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	1 cut(s)	139
FaiI	YATR	4 cut(s)	56, 137, 162, 188
FaqI	GGGAC	2 cut(s)	118, 224
FatI	CATG	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	6, 247
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	6, 247
GluI	GCNGC	2 cut(s)	6, 247
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	2 cut(s)	85, 243
Hpy166II	GTNNAC	2 cut(s)	127, 133
Hpy188I	TCNGA	3 cut(s)	37, 111, 204
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	127, 133
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	76, 170
HpyCH4IV	ACGT	3 cut(s)	129, 150, 184
HpyCH4V	TGCA	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	3 cut(s)	129, 150, 184
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	42, 199
LmnI	GCTCC	2 cut(s)	33, 94
LpnPI	CCDG	5 cut(s)	22, 128, 221, 228, 255
MaeII	ACGT	3 cut(s)	129, 150, 184
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	44, 201
MboI	GATC	2 cut(s)	42, 199
MboII	GAAGA	3 cut(s)	76, 158, 192
MhlI	GDGCHC	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	42, 199
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	7, 248
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	238
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	99
SatI	GCNGC	2 cut(s)	6, 247
Sau3AI	GATC	2 cut(s)	42, 199
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	6 cut(s)	99, 132, 153, 187, 198, 256
SinI	GGWCC	1 cut(s)	238
SsiI	CCGC	3 cut(s)	6, 246, 260
SspI	AATATT	1 cut(s)	226
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	241
TaiI	ACGT	3 cut(s)	132, 153, 187
TaqI	TCGA	3 cut(s)	45, 62, 120
TauI	GCSGC	2 cut(s)	8, 249
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	126
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.