Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 26 - 65 | 4.6e-09 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 83 - 185 | 3.7e-11 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 93 - 152 | 1.1e-09 | Leucine rich repeat |
| Pkinase | PF00069 | 289 - 557 | 2.3e-39 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 291 - 562 | 1.2e-40 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1800 |
| AarI | CACCTGC | 1 cut(s) | 773 |
| Acc36I | ACCTGC | 1 cut(s) | 773 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 665 |
| AccBSI | CCGCTC | 2 cut(s) | 459, 1708 |
| AccI | GTMKAC | 2 cut(s) | 742, 1391 |
| AccII | CGCG | 1 cut(s) | 762 |
| AciI | CCGC | 5 cut(s) | 459, 616, 1253, 1465, 1708 |
| AclWI | GGATC | 5 cut(s) | 71, 652, 1606, 1635, 1648 |
| AcoI | YGGCCR | 1 cut(s) | 354 |
| AcsI | RAATTY | 2 cut(s) | 364, 1099 |
| AcuI | CTGAAG | 2 cut(s) | 491, 1668 |
| AfaI | GTAC | 4 cut(s) | 1205, 1633, 1677, 1754 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 263, 665 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 441 |
| AjnI | CCWGG | 2 cut(s) | 970, 1803 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1275, 1307 |
| AleI | CACNNNNGTG | 1 cut(s) | 618 |
| Alw26I | GTCTC | 2 cut(s) | 1540, 1753 |
| AlwI | GGATC | 5 cut(s) | 71, 652, 1606, 1635, 1648 |
| AoxI | GGCC | 3 cut(s) | 354, 1157, 1366 |
| ApeKI | GCWGC | 3 cut(s) | 844, 983, 1723 |
| ApoI | RAATTY | 2 cut(s) | 364, 1099 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1262, 1294 |
| AseI | ATTAAT | 1 cut(s) | 501 |
| AspLEI | GCGC | 1 cut(s) | 762 |
| AspS9I | GGNCC | 2 cut(s) | 177, 1366 |
| AsuC2I | CCSGG | 1 cut(s) | 1137 |
| AsuHPI | GGTGA | 3 cut(s) | 117, 797, 1307 |
| AsuNHI | GCTAGC | 1 cut(s) | 50 |
| AvaII | GGWCC | 1 cut(s) | 177 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 621, 654 |
| BalI | TGGCCA | 1 cut(s) | 356 |
| BamHI | GGATCC | 1 cut(s) | 1640 |
| BbvI | GCAGC | 3 cut(s) | 856, 995, 1735 |
| BccI | CCATC | 3 cut(s) | 13, 406, 1559 |
| BceAI | ACGGC | 1 cut(s) | 965 |
| BciT130I | CCWGG | 2 cut(s) | 972, 1805 |
| BciVI | GTATCC | 2 cut(s) | 315, 1095 |
| BcnI | CCSGG | 1 cut(s) | 1137 |
| BcoDI | GTCTC | 2 cut(s) | 1540, 1753 |
| BfaI | CTAG | 2 cut(s) | 51, 881 |
| BfmI | CTRYAG | 2 cut(s) | 852, 1557 |
| BfuAI | ACCTGC | 1 cut(s) | 773 |
| BfuI | GTATCC | 2 cut(s) | 315, 1095 |
| BglII | AGATCT | 1 cut(s) | 340 |
| BisI | GCNGC | 4 cut(s) | 845, 984, 1254, 1724 |
| BlpI | GCTNAGC | 1 cut(s) | 1704 |
| BlsI | GCNGC | 4 cut(s) | 846, 985, 1255, 1725 |
| Bme1390I | CCNGG | 3 cut(s) | 972, 1137, 1805 |
| Bme18I | GGWCC | 1 cut(s) | 177 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 441 |
| BmgT120I | GGNCC | 2 cut(s) | 177, 1366 |
| BmiI | GGNNCC | 4 cut(s) | 247, 1031, 1143, 1642 |
| BmrFI | CCNGG | 3 cut(s) | 972, 1137, 1805 |
| BmrI | ACTGGG | 1 cut(s) | 1404 |
| BmsI | GCATC | 6 cut(s) | 79, 474, 632, 970, 1543, 1798 |
| BmtI | GCTAGC | 1 cut(s) | 54 |
| BmuI | ACTGGG | 1 cut(s) | 1404 |
| Bpu10I | CCTNAGC | 1 cut(s) | 543 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1704 |
| BpuEI | CTTGAG | 1 cut(s) | 122 |
| BpuMI | CCSGG | 1 cut(s) | 1137 |
| BsaAI | YACGTR | 1 cut(s) | 1679 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1569 |
| BsaJI | CCNNGG | 5 cut(s) | 406, 971, 1136, 1192, 1636 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 705, 735 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 263, 665 |
| Bse1I | ACTGG | 5 cut(s) | 149, 319, 391, 1399, 1554 |
| Bse3DI | GCAATG | 1 cut(s) | 293 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1569 |
| BseBI | CCWGG | 2 cut(s) | 972, 1805 |
| BseDI | CCNNGG | 5 cut(s) | 406, 971, 1136, 1192, 1636 |
| BseGI | GGATG | 7 cut(s) | 465, 623, 1327, 1423, 1558, 1590, 1813 |
| BseJI | GATNNNNATC | 1 cut(s) | 1569 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 263, 665 |
| BseMI | GCAATG | 1 cut(s) | 293 |
| BseMII | CTCAG | 2 cut(s) | 534, 1695 |
| BseNI | ACTGG | 5 cut(s) | 149, 319, 391, 1399, 1554 |
| BseXI | GCAGC | 3 cut(s) | 856, 995, 1735 |
| Bsh1236I | CGCG | 1 cut(s) | 762 |
| BshFI | GGCC | 3 cut(s) | 356, 1159, 1368 |
| BsiSI | CCGG | 1 cut(s) | 1136 |
| BslFI | GGGAC | 1 cut(s) | 1372 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 263, 665 |
| BsmAI | GTCTC | 2 cut(s) | 1540, 1753 |
| BsmFI | GGGAC | 1 cut(s) | 1372 |
| BsmI | GAATGC | 2 cut(s) | 58, 806 |
| BsnI | GGCC | 3 cut(s) | 356, 1159, 1368 |
| Bsp143I | GATC | 7 cut(s) | 76, 340, 644, 1230, 1611, 1640, 1651 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1704 |
| BspACI | CCGC | 5 cut(s) | 459, 616, 1253, 1465, 1708 |
| BspANI | GGCC | 3 cut(s) | 356, 1159, 1368 |
| BspCNI | CTCAG | 2 cut(s) | 535, 1696 |
| BspFNI | CGCG | 1 cut(s) | 762 |
| BspLI | GGNNCC | 4 cut(s) | 247, 1031, 1143, 1642 |
| BspMI | ACCTGC | 1 cut(s) | 773 |
| BspOI | GCTAGC | 1 cut(s) | 54 |
| BspPI | GGATC | 5 cut(s) | 71, 652, 1606, 1635, 1648 |
| BsrBI | CCGCTC | 2 cut(s) | 459, 1708 |
| BsrDI | GCAATG | 1 cut(s) | 293 |
| BsrI | ACTGG | 5 cut(s) | 149, 319, 391, 1399, 1554 |
| BssECI | CCNNGG | 5 cut(s) | 406, 971, 1136, 1192, 1636 |
| BssMI | GATC | 7 cut(s) | 76, 340, 644, 1230, 1611, 1640, 1651 |
| BssT1I | CCWWGG | 2 cut(s) | 406, 1636 |
| Bst2UI | CCWGG | 2 cut(s) | 972, 1805 |
| Bst4CI | ACNGT | 2 cut(s) | 96, 596 |
| Bst6I | CTCTTC | 1 cut(s) | 285 |
| BstBAI | YACGTR | 1 cut(s) | 1679 |
| BstC8I | GCNNGC | 6 cut(s) | 52, 56, 513, 849, 1467, 1745 |
| BstDEI | CTNAG | 4 cut(s) | 543, 1198, 1227, 1704 |
| BstDSI | CCRYGG | 1 cut(s) | 1192 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 261 |
| BstF5I | GGATG | 7 cut(s) | 465, 623, 1327, 1423, 1558, 1590, 1813 |
| BstFNI | CGCG | 1 cut(s) | 762 |
| BstHHI | GCGC | 1 cut(s) | 762 |
| BstKTI | GATC | 7 cut(s) | 79, 343, 647, 1233, 1614, 1643, 1654 |
| BstMAI | GTCTC | 2 cut(s) | 1540, 1753 |
| BstMBI | GATC | 7 cut(s) | 76, 340, 644, 1230, 1611, 1640, 1651 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 41, 521, 759, 1447 |
| BstNI | CCWGG | 2 cut(s) | 972, 1805 |
| BstNSI | RCATGY | 1 cut(s) | 1730 |
| BstSCI | CCNGG | 3 cut(s) | 970, 1135, 1803 |
| BstSFI | CTRYAG | 2 cut(s) | 852, 1557 |
| BstSNI | TACGTA | 1 cut(s) | 1679 |
| BstUI | CGCG | 1 cut(s) | 762 |
| BstV1I | GCAGC | 3 cut(s) | 856, 995, 1735 |
| BstX2I | RGATCY | 4 cut(s) | 76, 340, 644, 1640 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 174 |
| BstYI | RGATCY | 4 cut(s) | 76, 340, 644, 1640 |
| BsuI | GTATCC | 2 cut(s) | 315, 1095 |
| BsuRI | GGCC | 3 cut(s) | 356, 1159, 1368 |
| BtgI | CCRYGG | 1 cut(s) | 1192 |
| BtsCI | GGATG | 7 cut(s) | 465, 623, 1327, 1423, 1558, 1590, 1813 |
| BtsI | GCAGTG | 1 cut(s) | 1622 |
| BtsIMutI | CAGTG | 2 cut(s) | 92, 1622 |
| BveI | ACCTGC | 1 cut(s) | 773 |
| Cac8I | GCNNGC | 6 cut(s) | 52, 56, 513, 849, 1467, 1745 |
| CfoI | GCGC | 1 cut(s) | 762 |
| Cfr13I | GGNCC | 2 cut(s) | 177, 1366 |
| Csp6I | GTAC | 4 cut(s) | 1204, 1632, 1676, 1753 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1299, 1334 |
| CviAII | CATG | 5 cut(s) | 168, 1093, 1211, 1520, 1727 |
| CviQI | GTAC | 4 cut(s) | 1204, 1632, 1676, 1753 |
| DdeI | CTNAG | 4 cut(s) | 543, 1198, 1227, 1704 |
| DpnI | GATC | 7 cut(s) | 78, 342, 646, 1232, 1613, 1642, 1653 |
| DpnII | GATC | 7 cut(s) | 76, 340, 644, 1230, 1611, 1640, 1651 |
| DriI | GACNNNNNGTC | 1 cut(s) | 441 |
| EaeI | YGGCCR | 1 cut(s) | 354 |
| Eam1104I | CTCTTC | 1 cut(s) | 285 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 1 cut(s) | 285 |
| Eco105I | TACGTA | 1 cut(s) | 1679 |
| Eco130I | CCWWGG | 2 cut(s) | 406, 1636 |
| Eco47I | GGWCC | 1 cut(s) | 177 |
| Eco57I | CTGAAG | 2 cut(s) | 491, 1668 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 261 |
| EcoRII | CCWGG | 2 cut(s) | 970, 1803 |
| EcoT14I | CCWWGG | 2 cut(s) | 406, 1636 |
| ErhI | CCWWGG | 2 cut(s) | 406, 1636 |
| FaeI | CATG | 5 cut(s) | 171, 1096, 1214, 1523, 1730 |
| FaqI | GGGAC | 1 cut(s) | 1372 |
| FatI | CATG | 5 cut(s) | 167, 1092, 1210, 1519, 1726 |
| FauI | CCCGC | 2 cut(s) | 452, 1458 |
| FblI | GTMKAC | 2 cut(s) | 742, 1391 |
| Fnu4HI | GCNGC | 4 cut(s) | 845, 984, 1254, 1724 |
| FokI | GGATG | 7 cut(s) | 452, 610, 1334, 1430, 1565, 1577, 1820 |
| Fsp4HI | GCNGC | 4 cut(s) | 845, 984, 1254, 1724 |
| FspBI | CTAG | 2 cut(s) | 51, 881 |
| GlaI | GCGC | 1 cut(s) | 761 |
| GluI | GCNGC | 4 cut(s) | 845, 984, 1254, 1724 |
| HaeIII | GGCC | 3 cut(s) | 356, 1159, 1368 |
| HapII | CCGG | 1 cut(s) | 1136 |
| HhaI | GCGC | 1 cut(s) | 762 |
| Hin1II | CATG | 5 cut(s) | 171, 1096, 1214, 1523, 1730 |
| Hin6I | GCGC | 1 cut(s) | 760 |
| HinP1I | GCGC | 1 cut(s) | 760 |
| HincII | GTYRAC | 1 cut(s) | 793 |
| HindII | GTYRAC | 1 cut(s) | 793 |
| HindIII | AAGCTT | 2 cut(s) | 422, 662 |
| HinfI | GANTC | 7 cut(s) | 148, 194, 442, 473, 559, 967, 1790 |
| HpaII | CCGG | 1 cut(s) | 1136 |
| HphI | GGTGA | 3 cut(s) | 117, 797, 1307 |
| Hpy166II | GTNNAC | 8 cut(s) | 724, 743, 793, 1024, 1121, 1392, 1658, 1829 |
| Hpy188I | TCNGA | 7 cut(s) | 345, 417, 558, 628, 925, 1408, 1669 |
| Hpy188III | TCNNGA | 6 cut(s) | 433, 642, 1241, 1482, 1525, 1574 |
| Hpy8I | GTNNAC | 8 cut(s) | 724, 743, 793, 1024, 1121, 1392, 1658, 1829 |
| HpyAV | CCTTC | 4 cut(s) | 526, 792, 1099, 1682 |
| HpyCH4III | ACNGT | 2 cut(s) | 96, 596 |
| HpyCH4IV | ACGT | 1 cut(s) | 1678 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 41, 521, 759, 1447 |
| HpyF3I | CTNAG | 4 cut(s) | 543, 1198, 1227, 1704 |
| HpySE526I | ACGT | 1 cut(s) | 1678 |
| Hsp92II | CATG | 5 cut(s) | 171, 1096, 1214, 1523, 1730 |
| HspAI | GCGC | 1 cut(s) | 760 |
| Kzo9I | GATC | 7 cut(s) | 76, 340, 644, 1230, 1611, 1640, 1651 |
| LmnI | GCTCC | 4 cut(s) | 22, 462, 1141, 1447 |
| Lsp1109I | GCAGC | 3 cut(s) | 856, 995, 1735 |
| LweI | GCATC | 6 cut(s) | 79, 474, 632, 970, 1543, 1798 |
| MaeI | CTAG | 2 cut(s) | 51, 881 |
| MaeII | ACGT | 1 cut(s) | 1678 |
| MaeIII | GTNAC | 5 cut(s) | 217, 1339, 1453, 1583, 1735 |
| MalI | GATC | 7 cut(s) | 78, 342, 646, 1232, 1613, 1642, 1653 |
| MbiI | CCGCTC | 2 cut(s) | 459, 1708 |
| MboI | GATC | 7 cut(s) | 76, 340, 644, 1230, 1611, 1640, 1651 |
| MfeI | CAATTG | 1 cut(s) | 1470 |
| MflI | RGATCY | 4 cut(s) | 76, 340, 644, 1640 |
| MlsI | TGGCCA | 1 cut(s) | 356 |
| MluNI | TGGCCA | 1 cut(s) | 356 |
| MlyI | GAGTC | 4 cut(s) | 188, 451, 976, 1784 |
| MmeI | TCCRAC | 4 cut(s) | 658, 667, 1512, 1647 |
| MnlI | CCTC | 9 cut(s) | 99, 683, 707, 828, 1164, 1591, 1663, 1687, 1780 |
| Mox20I | TGGCCA | 1 cut(s) | 356 |
| MscI | TGGCCA | 1 cut(s) | 356 |
| MseI | TTAA | 8 cut(s) | 240, 383, 501, 528, 945, 1103, 1131, 1248 |
| MslI | CAYNNNNRTG | 2 cut(s) | 618, 1242 |
| Msp20I | TGGCCA | 1 cut(s) | 356 |
| MspA1I | CMGCKG | 3 cut(s) | 618, 847, 1465 |
| MspI | CCGG | 1 cut(s) | 1136 |
| MspR9I | CCNGG | 3 cut(s) | 972, 1137, 1805 |
| MunI | CAATTG | 1 cut(s) | 1470 |
| Mva1269I | GAATGC | 2 cut(s) | 58, 806 |
| MvaI | CCWGG | 2 cut(s) | 972, 1805 |
| MvnI | CGCG | 1 cut(s) | 762 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 41, 521, 759, 1447 |
| NciI | CCSGG | 1 cut(s) | 1137 |
| NdeII | GATC | 7 cut(s) | 76, 340, 644, 1230, 1611, 1640, 1651 |
| NheI | GCTAGC | 1 cut(s) | 50 |
| NlaIII | CATG | 5 cut(s) | 171, 1096, 1214, 1523, 1730 |
| NlaIV | GGNNCC | 4 cut(s) | 247, 1031, 1143, 1642 |
| NmuCI | GTSAC | 1 cut(s) | 1339 |
| NspI | RCATGY | 1 cut(s) | 1730 |
| OliI | CACNNNNGTG | 1 cut(s) | 618 |
| PaqCI | CACCTGC | 1 cut(s) | 773 |
| PctI | GAATGC | 2 cut(s) | 58, 806 |
| PfeI | GAWTC | 3 cut(s) | 148, 473, 559 |
| PflFI | GACNNNGTC | 1 cut(s) | 1520 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 665 |
| PkrI | GCNGC | 4 cut(s) | 846, 985, 1255, 1725 |
| PleI | GAGTC | 4 cut(s) | 188, 450, 975, 1784 |
| PpsI | GAGTC | 4 cut(s) | 188, 450, 975, 1784 |
| Ppu21I | YACGTR | 1 cut(s) | 1679 |
| PshBI | ATTAAT | 1 cut(s) | 501 |
| PsiI | TTATAA | 1 cut(s) | 1800 |
| Psp6I | CCWGG | 2 cut(s) | 970, 1803 |
| PspGI | CCWGG | 2 cut(s) | 970, 1803 |
| PspN4I | GGNNCC | 4 cut(s) | 247, 1031, 1143, 1642 |
| PspPI | GGNCC | 2 cut(s) | 177, 1366 |
| PsuI | RGATCY | 4 cut(s) | 76, 340, 644, 1640 |
| PsyI | GACNNNGTC | 1 cut(s) | 1520 |
| PvuII | CAGCTG | 1 cut(s) | 847 |
| RsaI | GTAC | 4 cut(s) | 1205, 1633, 1677, 1754 |
| RsaNI | GTAC | 4 cut(s) | 1204, 1632, 1676, 1753 |
| RseI | CAYNNNNRTG | 2 cut(s) | 618, 1242 |
| SaqAI | TTAA | 8 cut(s) | 240, 383, 501, 528, 945, 1103, 1131, 1248 |
| SatI | GCNGC | 4 cut(s) | 845, 984, 1254, 1724 |
| Sau3AI | GATC | 7 cut(s) | 76, 340, 644, 1230, 1611, 1640, 1651 |
| Sau96I | GGNCC | 2 cut(s) | 177, 1366 |
| SchI | GAGTC | 4 cut(s) | 188, 451, 976, 1784 |
| ScrFI | CCNGG | 3 cut(s) | 972, 1137, 1805 |
| SfaNI | GCATC | 6 cut(s) | 79, 474, 632, 970, 1543, 1798 |
| SfcI | CTRYAG | 2 cut(s) | 852, 1557 |
| SinI | GGWCC | 1 cut(s) | 177 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 618, 1242 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| SnaBI | TACGTA | 1 cut(s) | 1679 |
| SsiI | CCGC | 5 cut(s) | 459, 616, 1253, 1465, 1708 |
| SspI | AATATT | 1 cut(s) | 232 |
| SspMI | CTAG | 2 cut(s) | 51, 881 |
| StyD4I | CCNGG | 3 cut(s) | 970, 1135, 1803 |
| StyI | CCWWGG | 2 cut(s) | 406, 1636 |
| TaaI | ACNGT | 2 cut(s) | 96, 596 |
| TaiI | ACGT | 1 cut(s) | 1681 |
| TaqI | TCGA | 3 cut(s) | 1240, 1515, 1815 |
| TaqII | GACCGA | 2 cut(s) | 800, 810 |
| TauI | GCSGC | 1 cut(s) | 1256 |
| TfiI | GAWTC | 3 cut(s) | 148, 473, 559 |
| Tru1I | TTAA | 8 cut(s) | 240, 383, 501, 528, 945, 1103, 1131, 1248 |
| Tru9I | TTAA | 8 cut(s) | 240, 383, 501, 528, 945, 1103, 1131, 1248 |
| TscAI | CASTG | 2 cut(s) | 99, 1629 |
| TseFI | GTSAC | 1 cut(s) | 1339 |
| TseI | GCWGC | 3 cut(s) | 844, 983, 1723 |
| Tsp45I | GTSAC | 1 cut(s) | 1339 |
| TspDTI | ATGAA | 6 cut(s) | 90, 102, 685, 1081, 1226, 1227 |
| TspGWI | ACGGA | 1 cut(s) | 1430 |
| TspRI | CASTG | 2 cut(s) | 99, 1629 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1520 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 665 |
| VpaK11BI | GGWCC | 1 cut(s) | 177 |
| VspI | ATTAAT | 1 cut(s) | 501 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 261 |
| XapI | RAATTY | 2 cut(s) | 364, 1099 |
| XceI | RCATGY | 1 cut(s) | 1730 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 364 |
| XmiI | GTMKAC | 2 cut(s) | 742, 1391 |
| XspI | CTAG | 2 cut(s) | 51, 881 |