disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RdDM_RDM1 | PF09187 | 61 - 176 | 3.3e-49 | RNA-directed DNA methylation 1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 191 |
| AclWI | GGATC | 2 cut(s) | 220, 354 |
| AcoI | YGGCCR | 1 cut(s) | 301 |
| AfaI | GTAC | 1 cut(s) | 457 |
| AgsI | TTSAA | 1 cut(s) | 405 |
| AluBI | AGCT | 3 cut(s) | 278, 413, 481 |
| AluI | AGCT | 3 cut(s) | 278, 413, 481 |
| Alw26I | GTCTC | 1 cut(s) | 8 |
| AlwI | GGATC | 2 cut(s) | 220, 354 |
| Ama87I | CYCGRG | 1 cut(s) | 51 |
| AoxI | GGCC | 1 cut(s) | 301 |
| AspS9I | GGNCC | 1 cut(s) | 140 |
| AsuC2I | CCSGG | 2 cut(s) | 144, 497 |
| AsuHPI | GGTGA | 2 cut(s) | 520, 530 |
| AvaI | CYCGRG | 1 cut(s) | 51 |
| AvaII | GGWCC | 1 cut(s) | 140 |
| BalI | TGGCCA | 1 cut(s) | 303 |
| BcnI | CCSGG | 2 cut(s) | 144, 497 |
| BcoDI | GTCTC | 1 cut(s) | 8 |
| BlpI | GCTNAGC | 1 cut(s) | 477 |
| Bme1390I | CCNGG | 2 cut(s) | 144, 497 |
| Bme18I | GGWCC | 1 cut(s) | 140 |
| BmeT110I | CYCGRG | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 1 cut(s) | 140 |
| BmrFI | CCNGG | 2 cut(s) | 144, 497 |
| BmsI | GCATC | 1 cut(s) | 238 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 477 |
| BpuMI | CCSGG | 2 cut(s) | 144, 497 |
| BsaBI | GATNNNNATC | 1 cut(s) | 224 |
| BsaJI | CCNNGG | 1 cut(s) | 143 |
| Bse3DI | GCAATG | 2 cut(s) | 139, 308 |
| Bse8I | GATNNNNATC | 1 cut(s) | 224 |
| BseDI | CCNNGG | 1 cut(s) | 143 |
| BseGI | GGATG | 2 cut(s) | 253, 376 |
| BseJI | GATNNNNATC | 1 cut(s) | 224 |
| BseMI | GCAATG | 2 cut(s) | 139, 308 |
| Bsh1285I | CGRYCG | 1 cut(s) | 245 |
| BshFI | GGCC | 1 cut(s) | 303 |
| BsiEI | CGRYCG | 1 cut(s) | 245 |
| BsiHKCI | CYCGRG | 1 cut(s) | 51 |
| BsiSI | CCGG | 2 cut(s) | 143, 497 |
| BsmAI | GTCTC | 1 cut(s) | 8 |
| BsmBI | CGTCTC | 1 cut(s) | 8 |
| BsmI | GAATGC | 1 cut(s) | 268 |
| BsnI | GGCC | 1 cut(s) | 303 |
| BsoBI | CYCGRG | 1 cut(s) | 51 |
| Bsp143I | GATC | 5 cut(s) | 28, 160, 225, 242, 346 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 477 |
| BspACI | CCGC | 1 cut(s) | 191 |
| BspANI | GGCC | 1 cut(s) | 303 |
| BspPI | GGATC | 2 cut(s) | 220, 354 |
| BsrDI | GCAATG | 2 cut(s) | 139, 308 |
| BssECI | CCNNGG | 1 cut(s) | 143 |
| BssMI | GATC | 5 cut(s) | 28, 160, 225, 242, 346 |
| Bst4CI | ACNGT | 2 cut(s) | 88, 506 |
| Bst6I | CTCTTC | 2 cut(s) | 189, 369 |
| BstDEI | CTNAG | 2 cut(s) | 32, 477 |
| BstF5I | GGATG | 2 cut(s) | 253, 376 |
| BstKTI | GATC | 5 cut(s) | 31, 163, 228, 245, 349 |
| BstMAI | GTCTC | 1 cut(s) | 8 |
| BstMBI | GATC | 5 cut(s) | 28, 160, 225, 242, 346 |
| BstMCI | CGRYCG | 1 cut(s) | 245 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 172 |
| BstNSI | RCATGY | 1 cut(s) | 179 |
| BstSCI | CCNGG | 2 cut(s) | 142, 495 |
| BsuRI | GGCC | 1 cut(s) | 303 |
| BtsCI | GGATG | 2 cut(s) | 253, 376 |
| BtsI | GCAGTG | 1 cut(s) | 347 |
| BtsIMutI | CAGTG | 2 cut(s) | 347, 511 |
| Cfr13I | GGNCC | 1 cut(s) | 140 |
| Csp6I | GTAC | 1 cut(s) | 456 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 434, 469 |
| CviAII | CATG | 5 cut(s) | 176, 211, 286, 326, 546 |
| CviJI | RGCY | 8 cut(s) | 166, 278, 303, 382, 413, 476, 481, 487 |
| CviKI_1 | RGCY | 8 cut(s) | 166, 278, 303, 382, 413, 476, 481, 487 |
| CviQI | GTAC | 1 cut(s) | 456 |
| DdeI | CTNAG | 2 cut(s) | 32, 477 |
| DpnI | GATC | 5 cut(s) | 30, 162, 227, 244, 348 |
| DpnII | GATC | 5 cut(s) | 28, 160, 225, 242, 346 |
| EaeI | YGGCCR | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 2 cut(s) | 189, 369 |
| EarI | CTCTTC | 2 cut(s) | 189, 369 |
| Eco47I | GGWCC | 1 cut(s) | 140 |
| Eco88I | CYCGRG | 1 cut(s) | 51 |
| Esp3I | CGTCTC | 1 cut(s) | 8 |
| FaeI | CATG | 5 cut(s) | 179, 214, 289, 329, 549 |
| FaiI | YATR | 9 cut(s) | 177, 212, 254, 287, 300, 327, 425, 427, 547 |
| FatI | CATG | 5 cut(s) | 175, 210, 285, 325, 545 |
| FauNDI | CATATG | 1 cut(s) | 425 |
| FokI | GGATG | 2 cut(s) | 260, 383 |
| HaeIII | GGCC | 1 cut(s) | 303 |
| HapII | CCGG | 2 cut(s) | 143, 497 |
| Hin1II | CATG | 5 cut(s) | 179, 214, 289, 329, 549 |
| HinfI | GANTC | 5 cut(s) | 8, 20, 235, 322, 416 |
| HpaII | CCGG | 2 cut(s) | 143, 497 |
| HphI | GGTGA | 2 cut(s) | 520, 530 |
| Hpy166II | GTNNAC | 1 cut(s) | 445 |
| Hpy188I | TCNGA | 5 cut(s) | 7, 13, 25, 247, 493 |
| Hpy188III | TCNNGA | 2 cut(s) | 203, 354 |
| Hpy8I | GTNNAC | 1 cut(s) | 445 |
| HpyAV | CCTTC | 3 cut(s) | 89, 131, 178 |
| HpyCH4III | ACNGT | 2 cut(s) | 88, 506 |
| HpyCH4IV | ACGT | 1 cut(s) | 522 |
| HpyCH4V | TGCA | 4 cut(s) | 152, 175, 313, 545 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 172 |
| HpyF3I | CTNAG | 2 cut(s) | 32, 477 |
| HpySE526I | ACGT | 1 cut(s) | 522 |
| Hsp92II | CATG | 5 cut(s) | 179, 214, 289, 329, 549 |
| Kzo9I | GATC | 5 cut(s) | 28, 160, 225, 242, 346 |
| LpnPI | CCDG | 5 cut(s) | 156, 180, 332, 433, 510 |
| LweI | GCATC | 1 cut(s) | 238 |
| MaeII | ACGT | 1 cut(s) | 522 |
| MaeIII | GTNAC | 1 cut(s) | 518 |
| MalI | GATC | 5 cut(s) | 30, 162, 227, 244, 348 |
| MboI | GATC | 5 cut(s) | 28, 160, 225, 242, 346 |
| MboII | GAAGA | 6 cut(s) | 111, 133, 206, 226, 229, 386 |
| MlsI | TGGCCA | 1 cut(s) | 303 |
| MluCI | AATT | 4 cut(s) | 170, 280, 293, 536 |
| MluNI | TGGCCA | 1 cut(s) | 303 |
| MlyI | GAGTC | 2 cut(s) | 29, 316 |
| MmeI | TCCRAC | 1 cut(s) | 37 |
| MnlI | CCTC | 3 cut(s) | 66, 430, 541 |
| Mox20I | TGGCCA | 1 cut(s) | 303 |
| MscI | TGGCCA | 1 cut(s) | 303 |
| Msp20I | TGGCCA | 1 cut(s) | 303 |
| MspI | CCGG | 2 cut(s) | 143, 497 |
| MspR9I | CCNGG | 2 cut(s) | 144, 497 |
| Mva1269I | GAATGC | 1 cut(s) | 268 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 172 |
| NciI | CCSGG | 2 cut(s) | 144, 497 |
| NdeI | CATATG | 1 cut(s) | 425 |
| NdeII | GATC | 5 cut(s) | 28, 160, 225, 242, 346 |
| NlaIII | CATG | 5 cut(s) | 179, 214, 289, 329, 549 |
| NmuCI | GTSAC | 1 cut(s) | 518 |
| NspI | RCATGY | 1 cut(s) | 179 |
| PaeR7I | CTCGAG | 1 cut(s) | 51 |
| PctI | GAATGC | 1 cut(s) | 268 |
| PfeI | GAWTC | 3 cut(s) | 8, 235, 416 |
| PflFI | GACNNNGTC | 1 cut(s) | 19 |
| Ple19I | CGATCG | 1 cut(s) | 245 |
| PleI | GAGTC | 2 cut(s) | 28, 316 |
| PpsI | GAGTC | 2 cut(s) | 28, 316 |
| PspPI | GGNCC | 1 cut(s) | 140 |
| PspXI | VCTCGAGB | 1 cut(s) | 51 |
| PsyI | GACNNNGTC | 1 cut(s) | 19 |
| PvuI | CGATCG | 1 cut(s) | 245 |
| RsaI | GTAC | 1 cut(s) | 457 |
| RsaNI | GTAC | 1 cut(s) | 456 |
| Sau3AI | GATC | 5 cut(s) | 28, 160, 225, 242, 346 |
| Sau96I | GGNCC | 1 cut(s) | 140 |
| SchI | GAGTC | 2 cut(s) | 29, 316 |
| ScrFI | CCNGG | 2 cut(s) | 144, 497 |
| SetI | ASST | 8 cut(s) | 189, 280, 321, 364, 415, 483, 525, 533 |
| SfaNI | GCATC | 1 cut(s) | 238 |
| Sfr274I | CTCGAG | 1 cut(s) | 51 |
| SinI | GGWCC | 1 cut(s) | 140 |
| SlaI | CTCGAG | 1 cut(s) | 51 |
| SmlI | CTYRAG | 1 cut(s) | 51 |
| SmoI | CTYRAG | 1 cut(s) | 51 |
| Sse9I | AATT | 4 cut(s) | 170, 280, 293, 536 |
| SsiI | CCGC | 1 cut(s) | 191 |
| StyD4I | CCNGG | 2 cut(s) | 142, 495 |
| TaaI | ACNGT | 2 cut(s) | 88, 506 |
| TaiI | ACGT | 1 cut(s) | 525 |
| TaqI | TCGA | 1 cut(s) | 52 |
| TasI | AATT | 4 cut(s) | 170, 280, 293, 536 |
| TatI | WGTACW | 1 cut(s) | 455 |
| TfiI | GAWTC | 3 cut(s) | 8, 235, 416 |
| TscAI | CASTG | 2 cut(s) | 347, 511 |
| TseFI | GTSAC | 1 cut(s) | 518 |
| Tsp45I | GTSAC | 1 cut(s) | 518 |
| TspDTI | ATGAA | 8 cut(s) | 108, 150, 227, 261, 302, 387, 389, 458 |
| TspGWI | ACGGA | 1 cut(s) | 32 |
| TspRI | CASTG | 2 cut(s) | 347, 511 |
| Tth111I | GACNNNGTC | 1 cut(s) | 19 |
| VpaK11BI | GGWCC | 1 cut(s) | 140 |
| XceI | RCATGY | 1 cut(s) | 179 |
| XhoI | CTCGAG | 1 cut(s) | 51 |