RchiOBHm_Chr7g0231961

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000018
Physical Location & Seq
Reverse (-)
55816227 .. 55819390
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20788

Sequence Viewer

Length: 2895 bp
ATGGCTGAGGCACTCGTCAACCTCCTTGTTGAACAATTGGGTTCAGTTGTTTACCACCATACAAGTGAAGGGGTGAAACTAGTTTTGAAAGCTAAGAAGGACGTTGACAAATTCAGAAGCACCCTCAAACTTATCCAGAATGTGCTTCACGATGCTGAGAAGAAGCAAGTGTCGGATCCCGCGGTGAGAGACTGGTTGGTTGAGCTCAAAGACGTGTCGTACAAGATGGATGACGTGCTGGACGCTTGGAACACTGAAATTGGGAAACGAGAAGCTGAGAAGCAAGAAACACAAGGTTCTGATGTGGAGGTACGTTTCTCATTACGTTCCAATTGCATTTGTCTTGACCGATTGAATGAGGTAACTCATCGTTATAAGATTGGTAGTGCAATAAAAGATCTGAATGAAGAGTTAACTCAGATTTATGTTGACAAAAACAAGTTTAGCTTTCAATCCATCATGCCTGCTGCTGCACTTAATGTTGAACAACCTAATCCACGGCGTATAACTTCATCTTTCGTCGATGTATCGACCATATGTGGGCGGGAAGTTGAAAAGGAGAGGTTGGTGAGTGAGTTGTTAGGGAAGGAGAGTCCCGGCCTTGTCATCCCCATTGTAGGGATGGGAGGATTGGGGAAAACAACTTTTACCCAATCAGTCTTCAAGGATGCACGAGTTCAAGCCCATTTTGATATCAAAGCATGGGTTTGTGTCTCAGACCCTTTTGATGTCATCAAGATTGCAAAAGAAATCCTTGAACATGTCAATGGAATAAAATCTCAAGATAGTTCAAATGTGTTGCAAATATTATTAGAAGAGATCGAGAAACGTATCAAGGATAAAAAGTTTCTCCTCGTCCTTGATGATGTGTGGACAGAAAACCAAACAGAGTGGGAGAGGTTGAGTTTACCACTACTAATGCAAAGCTGTGCTGAAGGCAGTAGAATTTTGGTGACCACTCGAAACCAGGGGGTTGCTCGAATGATGAAGGCAACCAGTCACATGATCATTTTGGAGAAGCTGAGTCATTCAGATTCTTTGAAACTATTCAATATAATTGCATTTTGGGATAGGGAACAAGATAAGTCCAACAAGGGGTTTGGAGATATTGCTGAGGAAATTGTTAGAAAATGTGATGGTCTGCCTCTTGTTCTGAAGACTTTAGGTAGTCTTCTATTGCATAAGCAAACAATCAGAGAATGGGAAGAAGTTCTCAACAGTGAGACATGGAAGGTAAAAGTGGTTCAAGAAGAAGTTTTTCGACCATTATTACTCAGTTATTATGATTTGGCTTTGGAGGATAGGAGTTGCCTTCTGTATTGTGCTACTTATCCCAAAGATTTTGAGTTCGACAAAGAAATTCTTATCAAGCAGTGGATGTCACAAGGCTATTTGAATGTTGGAGAAAACAGAGAAGAGGCAACACAAGGTAGAGAAGTTTTTGCCAAGTTAATAATGCGATGTTTGTTCCAAGATTTCAAGCAAAATGCACTTACCAAGGAAATCATACACTGCAAAATGCATGATACTGTGCATGATTTTGTACAATATCTTAGCCAGAATGAGTGTCTTACTATGGAGGCTACGGGTACTCATGGAACAGAGACATCGAGTGCAAATGATAGGGTTCGCCATTTGACCTTAATGTCAGCACATGATGGTCCATTTCCATCTTTTATATCAAAATTAGCGAATAACAAAATTTTGCGTACCCTGACAACTTTTGGTTCAAGAATTACTGCCATAGACTCAGATTTAATTTCACAGTTGAAACGTCTAAGGACTTTGAATTTGAGTTGCAATGACATCTGTCAACTGCCAGAGGAGATCGGTGATTTGATATATTTGAGATATCTTGATTTGTCTGATAACCGTAATTTGAGGAGATTACCCGAAAGCCTGTGTAACTTGTGCAATTTGCAAACTTTGAGGCTTGATTTTTGCGAGTGCCTTGAAAAGGTGCCTGAGAAAATGGGGAAGTTGATTAACTTGAAGCACCTTCATGTTAATTTTTGTAGATCGCTTGAGTACTTACCAAAAGGGATTAAGCGTATAAGGAATTTGCGAACACTAGACGGGGACCCATCTGTTCATTGTAGTGAAGTTGCCGAAGCATTGACATTAGGAGATCTGAGAATGATGAATCAGCTTCGCCGTCTTGACATCCGTATTTCAAGGGTTGGGGAAAATGCTGCAAGTGAGGCCGAGAAAGCAGAATTGAATCAAAAACTGCATCTTTCTTATTTACGACTTATTCTGTCTGACATCGACACAAATTCTGGGGTAATGAACGCCTTGCGACCACATGAAAATTTGGAGTCTTTGGTAATTTGGGGGTATAAAGGCTCCACCTGGCCCAATTGGATGACGACGTCGTATTTAACTAGATTGACAGCCTTTCATCTTTGTGGCAGCCAGTTCTCTGTTTTGCCTCCTCTCGGGAAACTACCGTCTCTTAAAGTAGTCAGGCTGTTTTTGTTTGGTCCGGAAGAGATTGGAGCTGAATTTTACGGAGTAGAAGAAGAAACATCATTATCCTTCCCGAGTCTGGAAACACTCTATCTTGGCAGATTGTGGAGTTTAGAAAAGTGGGAATTAGGTGGAAAGGCAGAAGAGGATTCTTCTAATTCCCAAATGAAATCAATTTCAATAATGCCACGCCTTTCTTCCTTGTATATTCAGTCGTGTCATAGACTAAAACAACTGCCAGACTTCCTTCTGCAAAATGCATCACTGCAGAATCTTTTCATCGAAGATTGTTACAGCTTAGGCCGCCTTCCTGACGAGTTCATCTCTCGCATCCCAAACGTCACAATTAGTGAAACCTCATATGATCCCATTTTCAAAGGAAGGGAAATAGATACTGAATACACCTTCTGGTATGTAATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

964

Amino Acids

110.36

Weight (kDa)

5.87

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 95 2.2e-20 Rx N-terminal domain
NB-ARC PF00931 183 - 355 2.6e-37 NB-ARC domain
WHD_DRP PF23559 444 - 515 7.2e-18 Disease resistance protein Winged helix domain
LRR_14 PF23598 561 - 646 2e-11 Leucine-rich repeat region
LRR_14 PF23598 569 - 856 7.6e-30 Leucine-rich repeat region
LRR_8 PF13855 576 - 625 6.7e-07 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 708 - 824 4.2e-22 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AasI GACNNNNNNGTC 1 cut(s) 1645
AatII GACGTC 1 cut(s) 2375
AccB1I GGYRCC 1 cut(s) 1960
AccII CGCG 1 cut(s) 182
AccIII TCCGGA 1 cut(s) 2485
AciI CCGC 4 cut(s) 180, 182, 544, 2773
AclWI GGATC 3 cut(s) 170, 183, 2828
AcsI RAATTY 9 cut(s) 110, 945, 1359, 1701, 1789, 2059, 2275, 2311, 2504
AcuI CTGAAG 2 cut(s) 954, 1175
AcyI GRCGYC 1 cut(s) 2372
AfaI GTAC 6 cut(s) 221, 312, 1545, 1591, 1711, 2030
AfiI CCNNNNNNNGG 7 cut(s) 540, 617, 618, 1095, 1957, 2438, 2548
AflIII ACRYGT 2 cut(s) 213, 760
AhlI ACTAGT 1 cut(s) 79
AjiI CACGTC 2 cut(s) 214, 235
AjnI CCWGG 2 cut(s) 966, 2351
AluBI AGCT 9 cut(s) 92, 205, 275, 447, 927, 1021, 2149, 2501, 2766
AluI AGCT 9 cut(s) 92, 205, 275, 447, 927, 1021, 2149, 2501, 2766
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 5 cut(s) 183, 718, 1217, 1598, 2457
AlwI GGATC 3 cut(s) 170, 183, 2828
Ama87I CYCGRG 2 cut(s) 2438, 2542
Aor13HI TCCGGA 1 cut(s) 2485
AoxI GGCC 4 cut(s) 598, 2202, 2354, 2770
ApeKI GCWGC 4 cut(s) 467, 470, 2192, 2412
ApoI RAATTY 9 cut(s) 110, 945, 1359, 1701, 1789, 2059, 2275, 2311, 2504
ArsI GACNNNNNNTTYG 2 cut(s) 1774, 1806
AseI ATTAAT 1 cut(s) 2889
Asp700I GAANNNNTTC 4 cut(s) 1046, 1209, 1257, 2744
AspS9I GGNCC 4 cut(s) 1661, 2080, 2355, 2483
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 5 cut(s) 85, 196, 580, 964, 1844
AvaI CYCGRG 2 cut(s) 2438, 2542
AvaII GGWCC 3 cut(s) 1661, 2080, 2483
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 1960
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 3 cut(s) 652, 1163, 1163
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 2 cut(s) 6, 1113
BbvI GCAGC 4 cut(s) 454, 457, 2179, 2424
BccI CCATC 7 cut(s) 220, 464, 616, 1130, 1652, 1678, 2092
BceAI ACGGC 2 cut(s) 515, 2139
BciT130I CCWGG 2 cut(s) 968, 2353
BclI TGATCA 1 cut(s) 1005
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 5 cut(s) 183, 718, 1217, 1598, 2457
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 3 cut(s) 80, 2072, 2385
BfmI CTRYAG 1 cut(s) 2735
BglII AGATCT 2 cut(s) 397, 2128
BisI GCNGC 5 cut(s) 468, 471, 2193, 2413, 2773
BlsI GCNGC 5 cut(s) 469, 472, 2194, 2414, 2774
BmcAI AGTACT 1 cut(s) 2030
Bme1390I CCNGG 3 cut(s) 597, 968, 2353
Bme18I GGWCC 3 cut(s) 1661, 2080, 2483
BmeT110I CYCGRG 2 cut(s) 2438, 2542
BmgBI CACGTC 2 cut(s) 214, 235
BmgT120I GGNCC 4 cut(s) 1661, 2080, 2355, 2483
BmiI GGNNCC 5 cut(s) 177, 1962, 2081, 2082, 2347
BmrFI CCNGG 3 cut(s) 597, 968, 2353
BmsI GCATC 5 cut(s) 142, 658, 2242, 2738, 2808
BoxI GACNNNNGTC 1 cut(s) 1809
BpiI GAAGAC 3 cut(s) 652, 1163, 1163
BplI GAGNNNNNCTC 2 cut(s) 2777, 2809
Bpu10I CCTNAGC 3 cut(s) 6, 1113, 2767
BpuEI CTTGAG 2 cut(s) 765, 2045
BpuMI CCSGG 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 2372
BsaJI CCNNGG 4 cut(s) 180, 497, 967, 1497
BsaWI WCCGGW 1 cut(s) 2485
Bsc4I CCNNNNNNNGG 7 cut(s) 540, 617, 618, 1095, 1957, 2438, 2548
Bse1I ACTGG 3 cut(s) 197, 996, 2416
Bse3DI GCAATG 1 cut(s) 1807
BseAI TCCGGA 1 cut(s) 2485
BseBI CCWGG 2 cut(s) 968, 2353
BseDI CCNNGG 4 cut(s) 180, 497, 967, 1497
BseGI GGATG 8 cut(s) 235, 606, 627, 673, 1383, 2163, 2370, 2799
BseLI CCNNNNNNNGG 7 cut(s) 540, 617, 618, 1095, 1957, 2438, 2548
BseMI GCAATG 1 cut(s) 1807
BseNI ACTGG 3 cut(s) 197, 996, 2416
BseRI GAGGAG 4 cut(s) 842, 1838, 1897, 2424
BseXI GCAGC 4 cut(s) 454, 457, 2179, 2424
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 4 cut(s) 600, 2204, 2356, 2772
BshNI GGYRCC 1 cut(s) 1960
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 2 cut(s) 2438, 2542
BsiSI CCGG 2 cut(s) 597, 2486
BslFI GGGAC 2 cut(s) 579, 2093
BslI CCNNNNNNNGG 7 cut(s) 540, 617, 618, 1095, 1957, 2438, 2548
BsmAI GTCTC 5 cut(s) 183, 718, 1217, 1598, 2457
BsmBI CGTCTC 1 cut(s) 2457
BsmFI GGGAC 2 cut(s) 579, 2093
BsnI GGCC 4 cut(s) 600, 2204, 2356, 2772
BsoBI CYCGRG 2 cut(s) 2438, 2542
Bsp1286I GDGCHC 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 2485
Bsp1407I TGTACA 1 cut(s) 1543
Bsp143I GATC 8 cut(s) 175, 397, 819, 1005, 1827, 2018, 2128, 2833
BspACI CCGC 4 cut(s) 180, 182, 544, 2773
BspANI GGCC 4 cut(s) 600, 2204, 2356, 2772
BspEI TCCGGA 1 cut(s) 2485
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 5 cut(s) 177, 1962, 2081, 2082, 2347
BspMAI CTGCAG 1 cut(s) 2739
BspPI GGATC 3 cut(s) 170, 183, 2828
BspT107I GGYRCC 1 cut(s) 1960
BsrDI GCAATG 1 cut(s) 1807
BsrGI TGTACA 1 cut(s) 1543
BsrI ACTGG 3 cut(s) 197, 996, 2416
BssECI CCNNGG 4 cut(s) 180, 497, 967, 1497
BssMI GATC 8 cut(s) 175, 397, 819, 1005, 1827, 2018, 2128, 2833
BssNI GRCGYC 1 cut(s) 2372
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 1 cut(s) 1497
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 2 cut(s) 968, 2353
Bst4CI ACNGT 5 cut(s) 1220, 1531, 1767, 1874, 2451
Bst6I CTCTTC 5 cut(s) 402, 810, 1410, 2484, 2607
BstACI GRCGYC 1 cut(s) 2372
BstAUI TGTACA 1 cut(s) 1543
BstC8I GCNNGC 1 cut(s) 465
BstDSI CCRYGG 2 cut(s) 180, 497
BstEII GGTNACC 1 cut(s) 952
BstENI CCTNNNNNAGG 1 cut(s) 1955
BstF5I GGATG 8 cut(s) 235, 606, 627, 673, 1383, 2163, 2370, 2799
BstFNI CGCG 1 cut(s) 182
BstKTI GATC 8 cut(s) 178, 400, 822, 1008, 1830, 2021, 2131, 2836
BstMAI GTCTC 5 cut(s) 183, 718, 1217, 1598, 2457
BstMBI GATC 8 cut(s) 175, 397, 819, 1005, 1827, 2018, 2128, 2833
BstMWI GCNNNNNNNGC 3 cut(s) 2201, 2210, 2772
BstNI CCWGG 2 cut(s) 968, 2353
BstNSI RCATGY 1 cut(s) 764
BstPAI GACNNNNGTC 1 cut(s) 1809
BstPI GGTNACC 1 cut(s) 952
BstSCI CCNGG 3 cut(s) 595, 966, 2351
BstSFI CTRYAG 1 cut(s) 2735
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 4 cut(s) 454, 457, 2179, 2424
BstV2I GAAGAC 3 cut(s) 652, 1163, 1163
BstX2I RGATCY 3 cut(s) 175, 397, 2128
BstYI RGATCY 3 cut(s) 175, 397, 2128
BsuRI GGCC 4 cut(s) 600, 2204, 2356, 2772
BtgI CCRYGG 2 cut(s) 180, 497
BtgZI GCGATG 1 cut(s) 1474
BtrI CACGTC 2 cut(s) 214, 235
BtsCI GGATG 8 cut(s) 235, 606, 627, 673, 1383, 2163, 2370, 2799
BtsI GCAGTG 3 cut(s) 1379, 1510, 2732
BtsIMutI CAGTG 5 cut(s) 252, 1225, 1379, 1510, 2732
Cac8I GCNNGC 1 cut(s) 465
Cfr13I GGNCC 4 cut(s) 1661, 2080, 2355, 2483
Cfr42I CCGCGG 1 cut(s) 183
CseI GACGC 1 cut(s) 251
Csp6I GTAC 6 cut(s) 220, 311, 1544, 1590, 1710, 2029
CspCI CAANNNNNGTGG 2 cut(s) 872, 907
CviQI GTAC 6 cut(s) 220, 311, 1544, 1590, 1710, 2029
DpnI GATC 8 cut(s) 177, 399, 821, 1007, 1829, 2020, 2130, 2835
DpnII GATC 8 cut(s) 175, 397, 819, 1005, 1827, 2018, 2128, 2833
DrdI GACNNNNNNGTC 1 cut(s) 1645
DseDI GACNNNNNNGTC 1 cut(s) 1645
Eam1104I CTCTTC 5 cut(s) 402, 810, 1410, 2484, 2607
EarI CTCTTC 5 cut(s) 402, 810, 1410, 2484, 2607
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 1497
Eco24I GRGCYC 1 cut(s) 207
Eco32I GATATC 2 cut(s) 694, 1853
Eco47I GGWCC 3 cut(s) 1661, 2080, 2483
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 954, 1175
Eco88I CYCGRG 2 cut(s) 2438, 2542
Eco91I GGTNACC 1 cut(s) 952
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 1955
EcoO109I RGGNCCY 1 cut(s) 2080
EcoO65I GGTNACC 1 cut(s) 952
EcoRII CCWGG 2 cut(s) 966, 2351
EcoRV GATATC 2 cut(s) 694, 1853
EcoT14I CCWWGG 1 cut(s) 1497
EcoT22I ATGCAT 2 cut(s) 1524, 2731
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 1497
Esp3I CGTCTC 1 cut(s) 2457
FalI AAGNNNNNCTT 6 cut(s) 431, 463, 738, 770, 1347, 1379
FaqI GGGAC 2 cut(s) 579, 2093
FauI CCCGC 2 cut(s) 187, 537
FauNDI CATATG 2 cut(s) 536, 2830
FbaI TGATCA 1 cut(s) 1005
Fnu4HI GCNGC 5 cut(s) 468, 471, 2193, 2413, 2773
FokI GGATG 8 cut(s) 242, 593, 634, 680, 1390, 2150, 2377, 2786
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 5 cut(s) 468, 471, 2193, 2413, 2773
FspBI CTAG 3 cut(s) 80, 2072, 2385
GluI GCNGC 5 cut(s) 468, 471, 2193, 2413, 2773
HaeIII GGCC 4 cut(s) 600, 2204, 2356, 2772
HapII CCGG 2 cut(s) 597, 2486
HgaI GACGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 2372
HincII GTYRAC 5 cut(s) 19, 106, 414, 430, 1814
HindII GTYRAC 5 cut(s) 19, 106, 414, 430, 1814
HpaI GTTAAC 1 cut(s) 414
HpaII CCGG 2 cut(s) 597, 2486
HphI GGTGA 5 cut(s) 85, 196, 580, 964, 1844
Hpy166II GTNNAC 8 cut(s) 19, 52, 106, 414, 430, 873, 908, 1814
Hpy8I GTNNAC 8 cut(s) 19, 52, 106, 414, 430, 873, 908, 1814
Hpy99I CGWCG 3 cut(s) 524, 2374, 2377
HpyCH4III ACNGT 5 cut(s) 1220, 1531, 1767, 1874, 2451
HpyCH4IV ACGT 9 cut(s) 102, 213, 234, 313, 325, 829, 1774, 2372, 2808
HpyF10VI GCNNNNNNNGC 3 cut(s) 2201, 2210, 2772
HpySE526I ACGT 9 cut(s) 102, 213, 234, 313, 325, 829, 1774, 2372, 2808
Hsp92I GRCGYC 1 cut(s) 2372
KflI GGGWCCC 1 cut(s) 2080
Kpn2I TCCGGA 1 cut(s) 2485
Ksp22I TGATCA 1 cut(s) 1005
KspAI GTTAAC 1 cut(s) 414
KspI CCGCGG 1 cut(s) 183
Kzo9I GATC 8 cut(s) 175, 397, 819, 1005, 1827, 2018, 2128, 2833
LmnI GCTCC 2 cut(s) 2351, 2498
Lsp1109I GCAGC 4 cut(s) 454, 457, 2179, 2424
LweI GCATC 5 cut(s) 142, 658, 2242, 2738, 2808
MaeI CTAG 3 cut(s) 80, 2072, 2385
MaeII ACGT 9 cut(s) 102, 213, 234, 313, 325, 829, 1774, 2372, 2808
MaeIII GTNAC 7 cut(s) 361, 952, 998, 1380, 1904, 2759, 2809
MalI GATC 8 cut(s) 177, 399, 821, 1007, 1829, 2020, 2130, 2835
MboI GATC 8 cut(s) 175, 397, 819, 1005, 1827, 2018, 2128, 2833
MfeI CAATTG 3 cut(s) 35, 331, 2359
MflI RGATCY 3 cut(s) 175, 397, 2128
MhlI GDGCHC 1 cut(s) 207
MlyI GAGTC 5 cut(s) 601, 1033, 1742, 2327, 2554
MmeI TCCRAC 3 cut(s) 153, 1113, 1381
Mph1103I ATGCAT 2 cut(s) 1524, 2731
MroI TCCGGA 1 cut(s) 2485
MroXI GAANNNNTTC 4 cut(s) 1046, 1209, 1257, 2744
MslI CAYNNNNRTG 5 cut(s) 63, 765, 2001, 2097, 2406
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 2 cut(s) 597, 2486
MspR9I CCNGG 3 cut(s) 597, 968, 2353
MunI CAATTG 3 cut(s) 35, 331, 2359
MvaI CCWGG 2 cut(s) 968, 2353
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 2201, 2210, 2772
NciI CCSGG 1 cut(s) 597
NdeI CATATG 2 cut(s) 536, 2830
NdeII GATC 8 cut(s) 175, 397, 819, 1005, 1827, 2018, 2128, 2833
NlaIV GGNNCC 5 cut(s) 177, 1962, 2081, 2082, 2347
NmeAIII GCCGAG 1 cut(s) 2230
NmuCI GTSAC 4 cut(s) 952, 998, 1380, 2809
NsiI ATGCAT 2 cut(s) 1524, 2731
NspI RCATGY 1 cut(s) 764
PciI ACATGT 1 cut(s) 760
PdmI GAANNNNTTC 4 cut(s) 1046, 1209, 1257, 2744
PfeI GAWTC 5 cut(s) 1034, 2143, 2221, 2618, 2740
PflFI GACNNNGTC 1 cut(s) 2371
PkrI GCNGC 5 cut(s) 469, 472, 2194, 2414, 2774
PleI GAGTC 5 cut(s) 600, 1032, 1742, 2326, 2553
PpsI GAGTC 5 cut(s) 600, 1032, 1742, 2326, 2553
PpuMI RGGWCCY 1 cut(s) 2080
PscI ACATGT 1 cut(s) 760
PshAI GACNNNNGTC 1 cut(s) 1809
PshBI ATTAAT 1 cut(s) 2889
PsiI TTATAA 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 2080
Psp6I CCWGG 2 cut(s) 966, 2351
PspEI GGTNACC 1 cut(s) 952
PspGI CCWGG 2 cut(s) 966, 2351
PspN4I GGNNCC 5 cut(s) 177, 1962, 2081, 2082, 2347
PspPI GGNCC 4 cut(s) 1661, 2080, 2355, 2483
PspPPI RGGWCCY 1 cut(s) 2080
PsrI GAACNNNNNNTAC 2 cut(s) 1227, 1259
PstI CTGCAG 1 cut(s) 2739
PsuI RGATCY 3 cut(s) 175, 397, 2128
PsyI GACNNNGTC 1 cut(s) 2371
RsaI GTAC 6 cut(s) 221, 312, 1545, 1591, 1711, 2030
RsaNI GTAC 6 cut(s) 220, 311, 1544, 1590, 1710, 2029
RseI CAYNNNNRTG 5 cut(s) 63, 765, 2001, 2097, 2406
SacI GAGCTC 1 cut(s) 207
SacII CCGCGG 1 cut(s) 183
SatI GCNGC 5 cut(s) 468, 471, 2193, 2413, 2773
Sau3AI GATC 8 cut(s) 175, 397, 819, 1005, 1827, 2018, 2128, 2833
Sau96I GGNCC 4 cut(s) 1661, 2080, 2355, 2483
ScaI AGTACT 1 cut(s) 2030
SchI GAGTC 5 cut(s) 601, 1033, 1742, 2327, 2554
ScrFI CCNGG 3 cut(s) 597, 968, 2353
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 5 cut(s) 142, 658, 2242, 2738, 2808
SfcI CTRYAG 1 cut(s) 2735
Sfr303I CCGCGG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 183
SinI GGWCC 3 cut(s) 1661, 2080, 2483
SmiMI CAYNNNNRTG 5 cut(s) 63, 765, 2001, 2097, 2406
SmlI CTYRAG 2 cut(s) 780, 2024
SmoI CTYRAG 2 cut(s) 780, 2024
SpeI ACTAGT 1 cut(s) 79
SsiI CCGC 4 cut(s) 180, 182, 544, 2773
SspI AATATT 1 cut(s) 807
SspMI CTAG 3 cut(s) 80, 2072, 2385
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 595, 966, 2351
StyI CCWWGG 1 cut(s) 1497
TaaI ACNGT 5 cut(s) 1220, 1531, 1767, 1874, 2451
TaiI ACGT 9 cut(s) 105, 216, 237, 316, 328, 832, 1777, 2375, 2811
TaqII GACCGA 1 cut(s) 363
TatI WGTACW 2 cut(s) 1543, 2028
TauI GCSGC 1 cut(s) 2775
TfiI GAWTC 5 cut(s) 1034, 2143, 2221, 2618, 2740
TscAI CASTG 5 cut(s) 259, 1225, 1379, 1517, 2739
TseFI GTSAC 4 cut(s) 952, 998, 1380, 2809
TseI GCWGC 4 cut(s) 467, 470, 2192, 2412
Tsp45I GTSAC 4 cut(s) 952, 998, 1380, 2809
TspGWI ACGGA 2 cut(s) 2156, 2526
TspRI CASTG 5 cut(s) 259, 1225, 1379, 1517, 2739
Tth111I GACNNNGTC 1 cut(s) 2371
VpaK11BI GGWCC 3 cut(s) 1661, 2080, 2483
VspI ATTAAT 1 cut(s) 2889
XagI CCTNNNNNAGG 1 cut(s) 1955
XapI RAATTY 9 cut(s) 110, 945, 1359, 1701, 1789, 2059, 2275, 2311, 2504
XceI RCATGY 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
XmnI GAANNNNTTC 4 cut(s) 1046, 1209, 1257, 2744
XspI CTAG 3 cut(s) 80, 2072, 2385
ZraI GACGTC 1 cut(s) 2373
ZrmI AGTACT 1 cut(s) 2030
Zsp2I ATGCAT 2 cut(s) 1524, 2731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.