disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 11 - 98 | 1e-19 | Rx N-terminal domain |
| NB-ARC | PF00931 | 190 - 360 | 4.1e-35 | NB-ARC domain |
| WHD_DRP | PF23559 | 445 - 518 | 2.4e-19 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 571 - 867 | 7.7e-33 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 572 - 628 | 6.1e-07 | Leucine rich repeat |
| LRR_8 | PF13855 | 596 - 649 | 1.3e-06 | Leucine rich repeat |
| LRR_4 | PF12799 | 596 - 634 | 3.1e-06 | Leucine Rich repeats (2 copies) |
| LRR_R13L1-DRL21 | PF25019 | 711 - 831 | 6.1e-25 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 381, 2792 |
| AatII | GACGTC | 1 cut(s) | 2823 |
| Acc36I | ACCTGC | 2 cut(s) | 30, 2733 |
| AccB1I | GGYRCC | 1 cut(s) | 2360 |
| AccBSI | CCGCTC | 1 cut(s) | 1244 |
| AccI | GTMKAC | 1 cut(s) | 231 |
| AccII | CGCG | 2 cut(s) | 967, 2369 |
| AciI | CCGC | 5 cut(s) | 1244, 2318, 2367, 2641, 2660 |
| AclWI | GGATC | 6 cut(s) | 207, 722, 1006, 1242, 2840, 2853 |
| AcoI | YGGCCR | 2 cut(s) | 3, 2315 |
| AcuI | CTGAAG | 2 cut(s) | 900, 2144 |
| AcvI | CACGTG | 1 cut(s) | 2088 |
| AcyI | GRCGYC | 1 cut(s) | 2820 |
| AfaI | GTAC | 5 cut(s) | 772, 1720, 2251, 2295, 2869 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 28, 626, 2120, 2161, 2450 |
| AflIII | ACRYGT | 2 cut(s) | 2085, 2087 |
| AgeI | ACCGGT | 1 cut(s) | 2749 |
| AjiI | CACGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 2 cut(s) | 1473, 2301 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 179, 211 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 833, 865 |
| AluBI | AGCT | 8 cut(s) | 71, 140, 205, 1650, 2148, 2158, 2245, 2716 |
| AluI | AGCT | 8 cut(s) | 71, 140, 205, 1650, 2148, 2158, 2245, 2716 |
| Alw21I | GWGCWC | 1 cut(s) | 1969 |
| Alw26I | GTCTC | 3 cut(s) | 88, 220, 727 |
| AlwI | GGATC | 6 cut(s) | 207, 722, 1006, 1242, 2840, 2853 |
| AoxI | GGCC | 7 cut(s) | 3, 177, 352, 1293, 2110, 2315, 2804 |
| ApeKI | GCWGC | 6 cut(s) | 117, 163, 431, 817, 1059, 1749 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1924, 1956 |
| AseI | ATTAAT | 1 cut(s) | 1995 |
| AsiGI | ACCGGT | 1 cut(s) | 2749 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 305, 848, 1260, 1824, 2407 |
| AspLEI | GCGC | 3 cut(s) | 2218, 2260, 2371 |
| AspS9I | GGNCC | 6 cut(s) | 607, 1294, 1636, 2111, 2152, 2805 |
| AsuHPI | GGTGA | 9 cut(s) | 611, 754, 970, 1127, 1445, 1853, 2621, 2914, 2922 |
| AvaII | GGWCC | 3 cut(s) | 607, 1636, 2152 |
| BaeGI | GKGCMC | 2 cut(s) | 2168, 2540 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1440, 1473 |
| BamHI | GGATCC | 1 cut(s) | 2845 |
| BanI | GGYRCC | 1 cut(s) | 2360 |
| BbrPI | CACGTG | 1 cut(s) | 2088 |
| BbsI | GAAGAC | 2 cut(s) | 365, 2510 |
| Bbv12I | GWGCWC | 1 cut(s) | 1969 |
| BbvI | GCAGC | 6 cut(s) | 129, 175, 418, 829, 1071, 1761 |
| BccI | CCATC | 4 cut(s) | 220, 634, 1612, 2420 |
| BceAI | ACGGC | 4 cut(s) | 512, 1156, 1828, 2330 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2207, 2241 |
| BciT130I | CCWGG | 2 cut(s) | 1475, 2303 |
| BcoDI | GTCTC | 3 cut(s) | 88, 220, 727 |
| BfaI | CTAG | 2 cut(s) | 239, 1724 |
| BfmI | CTRYAG | 2 cut(s) | 1299, 1666 |
| BfoI | RGCGCY | 1 cut(s) | 2261 |
| BfuAI | ACCTGC | 2 cut(s) | 30, 2733 |
| BglII | AGATCT | 3 cut(s) | 189, 2137, 2326 |
| BisI | GCNGC | 7 cut(s) | 118, 164, 432, 818, 1060, 1750, 2318 |
| BlsI | GCNGC | 7 cut(s) | 119, 165, 433, 819, 1061, 1751, 2319 |
| BmcAI | AGTACT | 1 cut(s) | 2869 |
| Bme1390I | CCNGG | 2 cut(s) | 1475, 2303 |
| Bme18I | GGWCC | 3 cut(s) | 607, 1636, 2152 |
| BmgBI | CACGTC | 1 cut(s) | 235 |
| BmgT120I | GGNCC | 6 cut(s) | 607, 1294, 1636, 2111, 2152, 2805 |
| BmiI | GGNNCC | 5 cut(s) | 608, 1296, 2113, 2362, 2847 |
| BmrFI | CCNGG | 2 cut(s) | 1475, 2303 |
| BmrI | ACTGGG | 3 cut(s) | 1691, 2109, 2367 |
| BmsI | GCATC | 5 cut(s) | 142, 912, 1449, 2329, 2775 |
| BmuI | ACTGGG | 3 cut(s) | 1691, 2109, 2367 |
| BoxI | GACNNNNGTC | 2 cut(s) | 80, 101 |
| BpiI | GAAGAC | 2 cut(s) | 365, 2510 |
| BpmI | CTGGAG | 3 cut(s) | 167, 2054, 2324 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2712 |
| BpuEI | CTTGAG | 2 cut(s) | 857, 1876 |
| BsaAI | YACGTR | 1 cut(s) | 2088 |
| BsaHI | GRCGYC | 1 cut(s) | 2820 |
| BsaI | GGTCTC | 1 cut(s) | 88 |
| BsaJI | CCNNGG | 2 cut(s) | 6, 2016 |
| BsaWI | WCCGGW | 1 cut(s) | 2749 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 833, 863 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 28, 626, 2120, 2161, 2450 |
| Bse118I | RCCGGY | 1 cut(s) | 2749 |
| Bse1I | ACTGG | 5 cut(s) | 84, 778, 1697, 2115, 2373 |
| Bse3DI | GCAATG | 1 cut(s) | 1062 |
| BseBI | CCWGG | 2 cut(s) | 1475, 2303 |
| BseDI | CCNNGG | 2 cut(s) | 6, 2016 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 28, 626, 2120, 2161, 2450 |
| BseMI | GCAATG | 1 cut(s) | 1062 |
| BseNI | ACTGG | 5 cut(s) | 84, 778, 1697, 2115, 2373 |
| BseRI | GAGGAG | 4 cut(s) | 854, 1646, 2436, 2930 |
| BseSI | GKGCMC | 2 cut(s) | 2168, 2540 |
| BseX3I | CGGCCG | 1 cut(s) | 2315 |
| BseXI | GCAGC | 6 cut(s) | 129, 175, 418, 829, 1071, 1761 |
| Bsh1236I | CGCG | 2 cut(s) | 967, 2369 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2318 |
| BshFI | GGCC | 7 cut(s) | 5, 179, 354, 1295, 2112, 2317, 2806 |
| BshNI | GGYRCC | 1 cut(s) | 2360 |
| BshTI | ACCGGT | 1 cut(s) | 2749 |
| BsiEI | CGRYCG | 1 cut(s) | 2318 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1969 |
| BsiSI | CCGG | 1 cut(s) | 2750 |
| BslFI | GGGAC | 1 cut(s) | 911 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 28, 626, 2120, 2161, 2450 |
| BsmAI | GTCTC | 3 cut(s) | 88, 220, 727 |
| BsmFI | GGGAC | 1 cut(s) | 911 |
| BsmI | GAATGC | 3 cut(s) | 94, 1583, 1955 |
| BsnI | GGCC | 7 cut(s) | 5, 179, 354, 1295, 2112, 2317, 2806 |
| Bso31I | GGTCTC | 1 cut(s) | 88 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1969, 2168, 2540 |
| Bsp1407I | TGTACA | 1 cut(s) | 2293 |
| BspACI | CCGC | 5 cut(s) | 1244, 2318, 2367, 2641, 2660 |
| BspANI | GGCC | 7 cut(s) | 5, 179, 354, 1295, 2112, 2317, 2806 |
| BspFNI | CGCG | 2 cut(s) | 967, 2369 |
| BspHI | TCATGA | 1 cut(s) | 2101 |
| BspLI | GGNNCC | 5 cut(s) | 608, 1296, 2113, 2362, 2847 |
| BspMI | ACCTGC | 2 cut(s) | 30, 2733 |
| BspPI | GGATC | 6 cut(s) | 207, 722, 1006, 1242, 2840, 2853 |
| BspT107I | GGYRCC | 1 cut(s) | 2360 |
| BspTNI | GGTCTC | 1 cut(s) | 88 |
| BsrBI | CCGCTC | 1 cut(s) | 1244 |
| BsrDI | GCAATG | 1 cut(s) | 1062 |
| BsrFI | RCCGGY | 1 cut(s) | 2749 |
| BsrGI | TGTACA | 1 cut(s) | 2293 |
| BsrI | ACTGG | 5 cut(s) | 84, 778, 1697, 2115, 2373 |
| BssAI | RCCGGY | 1 cut(s) | 2749 |
| BssECI | CCNNGG | 2 cut(s) | 6, 2016 |
| BssNI | GRCGYC | 1 cut(s) | 2820 |
| BssT1I | CCWWGG | 1 cut(s) | 2016 |
| Bst2UI | CCWGG | 2 cut(s) | 1475, 2303 |
| Bst4CI | ACNGT | 9 cut(s) | 36, 46, 799, 909, 1053, 1907, 2509, 2622, 2816 |
| Bst6I | CTCTTC | 5 cut(s) | 434, 1827, 2177, 2738, 2829 |
| BstACI | GRCGYC | 1 cut(s) | 2820 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1936 |
| BstAUI | TGTACA | 1 cut(s) | 2293 |
| BstBAI | YACGTR | 1 cut(s) | 2088 |
| BstC8I | GCNNGC | 3 cut(s) | 181, 1145, 2227 |
| BstEII | GGTNACC | 1 cut(s) | 958 |
| BstFNI | CGCG | 2 cut(s) | 967, 2369 |
| BstH2I | RGCGCY | 1 cut(s) | 2261 |
| BstHHI | GCGC | 3 cut(s) | 2218, 2260, 2371 |
| BstMAI | GTCTC | 3 cut(s) | 88, 220, 727 |
| BstMCI | CGRYCG | 1 cut(s) | 2318 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 137, 665, 1601, 1812, 1936, 2213, 2222 |
| BstNI | CCWGG | 2 cut(s) | 1475, 2303 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 80, 101 |
| BstPI | GGTNACC | 1 cut(s) | 958 |
| BstSCI | CCNGG | 2 cut(s) | 1473, 2301 |
| BstSFI | CTRYAG | 2 cut(s) | 1299, 1666 |
| BstSLI | GKGCMC | 2 cut(s) | 2168, 2540 |
| BstUI | CGCG | 2 cut(s) | 967, 2369 |
| BstV1I | GCAGC | 6 cut(s) | 129, 175, 418, 829, 1071, 1761 |
| BstV2I | GAAGAC | 2 cut(s) | 365, 2510 |
| BstX2I | RGATCY | 6 cut(s) | 189, 727, 1234, 2137, 2326, 2845 |
| BstYI | RGATCY | 6 cut(s) | 189, 727, 1234, 2137, 2326, 2845 |
| BstZI | CGGCCG | 1 cut(s) | 2315 |
| BsuRI | GGCC | 7 cut(s) | 5, 179, 354, 1295, 2112, 2317, 2806 |
| BtgZI | GCGATG | 1 cut(s) | 1324 |
| BtrI | CACGTC | 1 cut(s) | 235 |
| BtsI | GCAGTG | 3 cut(s) | 1967, 2659, 2704 |
| BveI | ACCTGC | 2 cut(s) | 30, 2733 |
| Cac8I | GCNNGC | 3 cut(s) | 181, 1145, 2227 |
| CciI | TCATGA | 1 cut(s) | 2101 |
| CfoI | GCGC | 3 cut(s) | 2218, 2260, 2371 |
| Cfr10I | RCCGGY | 1 cut(s) | 2749 |
| Cfr13I | GGNCC | 6 cut(s) | 607, 1294, 1636, 2111, 2152, 2805 |
| CseI | GACGC | 2 cut(s) | 1010, 1928 |
| Csp6I | GTAC | 5 cut(s) | 771, 1719, 2250, 2294, 2868 |
| CspAI | ACCGGT | 1 cut(s) | 2749 |
| CviAII | CATG | 9 cut(s) | 458, 1177, 1535, 1547, 1981, 2102, 2291, 2679, 2926 |
| CviQI | GTAC | 5 cut(s) | 771, 1719, 2250, 2294, 2868 |
| EaeI | YGGCCR | 2 cut(s) | 3, 2315 |
| EagI | CGGCCG | 1 cut(s) | 2315 |
| Eam1104I | CTCTTC | 5 cut(s) | 434, 1827, 2177, 2738, 2829 |
| EarI | CTCTTC | 5 cut(s) | 434, 1827, 2177, 2738, 2829 |
| EciI | GGCGGA | 1 cut(s) | 2656 |
| EclXI | CGGCCG | 1 cut(s) | 2315 |
| Eco130I | CCWWGG | 1 cut(s) | 2016 |
| Eco31I | GGTCTC | 1 cut(s) | 88 |
| Eco32I | GATATC | 2 cut(s) | 2182, 2385 |
| Eco47I | GGWCC | 3 cut(s) | 607, 1636, 2152 |
| Eco52I | CGGCCG | 1 cut(s) | 2315 |
| Eco57I | CTGAAG | 2 cut(s) | 900, 2144 |
| Eco72I | CACGTG | 1 cut(s) | 2088 |
| Eco91I | GGTNACC | 1 cut(s) | 958 |
| EcoO109I | RGGNCCY | 1 cut(s) | 607 |
| EcoO65I | GGTNACC | 1 cut(s) | 958 |
| EcoRI | GAATTC | 1 cut(s) | 2519 |
| EcoRII | CCWGG | 2 cut(s) | 1473, 2301 |
| EcoRV | GATATC | 2 cut(s) | 2182, 2385 |
| EcoT14I | CCWWGG | 1 cut(s) | 2016 |
| EcoT22I | ATGCAT | 1 cut(s) | 1536 |
| ErhI | CCWWGG | 1 cut(s) | 2016 |
| FaeI | CATG | 9 cut(s) | 461, 1180, 1538, 1550, 1984, 2105, 2294, 2682, 2929 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 290, 322, 1380, 1412, 2213, 2245 |
| FaqI | GGGAC | 1 cut(s) | 911 |
| FatI | CATG | 9 cut(s) | 457, 1176, 1534, 1546, 1980, 2101, 2290, 2678, 2925 |
| FblI | GTMKAC | 1 cut(s) | 231 |
| Fnu4HI | GCNGC | 7 cut(s) | 118, 164, 432, 818, 1060, 1750, 2318 |
| Fsp4HI | GCNGC | 7 cut(s) | 118, 164, 432, 818, 1060, 1750, 2318 |
| FspBI | CTAG | 2 cut(s) | 239, 1724 |
| GlaI | GCGC | 3 cut(s) | 2217, 2259, 2370 |
| GluI | GCNGC | 7 cut(s) | 118, 164, 432, 818, 1060, 1750, 2318 |
| GsuI | CTGGAG | 3 cut(s) | 167, 2054, 2324 |
| HaeII | RGCGCY | 1 cut(s) | 2261 |
| HaeIII | GGCC | 7 cut(s) | 5, 179, 354, 1295, 2112, 2317, 2806 |
| HapII | CCGG | 1 cut(s) | 2750 |
| HgaI | GACGC | 2 cut(s) | 1010, 1928 |
| HhaI | GCGC | 3 cut(s) | 2218, 2260, 2371 |
| Hin1I | GRCGYC | 1 cut(s) | 2820 |
| Hin1II | CATG | 9 cut(s) | 461, 1180, 1538, 1550, 1984, 2105, 2294, 2682, 2929 |
| Hin6I | GCGC | 3 cut(s) | 2216, 2258, 2369 |
| HinP1I | GCGC | 3 cut(s) | 2216, 2258, 2369 |
| HincII | GTYRAC | 2 cut(s) | 232, 2824 |
| HindII | GTYRAC | 2 cut(s) | 232, 2824 |
| HindIII | AAGCTT | 2 cut(s) | 2146, 2243 |
| HinfI | GANTC | 4 cut(s) | 461, 830, 1736, 2900 |
| HpaII | CCGG | 1 cut(s) | 2750 |
| HphI | GGTGA | 9 cut(s) | 611, 754, 970, 1127, 1445, 1853, 2621, 2914, 2922 |
| Hpy166II | GTNNAC | 5 cut(s) | 232, 876, 1172, 2694, 2824 |
| Hpy188I | TCNGA | 9 cut(s) | 264, 438, 727, 829, 1008, 1788, 1803, 2756, 2784 |
| Hpy8I | GTNNAC | 5 cut(s) | 232, 876, 1172, 2694, 2824 |
| Hpy99I | CGWCG | 1 cut(s) | 236 |
| HpyCH4III | ACNGT | 9 cut(s) | 36, 46, 799, 909, 1053, 1907, 2509, 2622, 2816 |
| HpyCH4IV | ACGT | 3 cut(s) | 234, 2087, 2820 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 137, 665, 1601, 1812, 1936, 2213, 2222 |
| HpySE526I | ACGT | 3 cut(s) | 234, 2087, 2820 |
| Hsp92I | GRCGYC | 1 cut(s) | 2820 |
| Hsp92II | CATG | 9 cut(s) | 461, 1180, 1538, 1550, 1984, 2105, 2294, 2682, 2929 |
| HspAI | GCGC | 3 cut(s) | 2216, 2258, 2369 |
| Lsp1109I | GCAGC | 6 cut(s) | 129, 175, 418, 829, 1071, 1761 |
| LweI | GCATC | 5 cut(s) | 142, 912, 1449, 2329, 2775 |
| MaeI | CTAG | 2 cut(s) | 239, 1724 |
| MaeII | ACGT | 3 cut(s) | 234, 2087, 2820 |
| MaeIII | GTNAC | 8 cut(s) | 40, 73, 958, 1136, 1383, 2310, 2816, 2928 |
| MbiI | CCGCTC | 1 cut(s) | 1244 |
| MfeI | CAATTG | 1 cut(s) | 2697 |
| MflI | RGATCY | 6 cut(s) | 189, 727, 1234, 2137, 2326, 2845 |
| MhlI | GDGCHC | 3 cut(s) | 1969, 2168, 2540 |
| MlyI | GAGTC | 1 cut(s) | 2894 |
| MmeI | TCCRAC | 6 cut(s) | 177, 1869, 2357, 2491, 2614, 2762 |
| Mph1103I | ATGCAT | 1 cut(s) | 1536 |
| MroXI | GAANNNNTTC | 5 cut(s) | 305, 848, 1260, 1824, 2407 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1613, 2106 |
| MspA1I | CMGCKG | 1 cut(s) | 205 |
| MspI | CCGG | 1 cut(s) | 2750 |
| MspR9I | CCNGG | 2 cut(s) | 1475, 2303 |
| MunI | CAATTG | 1 cut(s) | 2697 |
| Mva1269I | GAATGC | 3 cut(s) | 94, 1583, 1955 |
| MvaI | CCWGG | 2 cut(s) | 1475, 2303 |
| MvnI | CGCG | 2 cut(s) | 967, 2369 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 137, 665, 1601, 1812, 1936, 2213, 2222 |
| NlaIII | CATG | 9 cut(s) | 461, 1180, 1538, 1550, 1984, 2105, 2294, 2682, 2929 |
| NlaIV | GGNNCC | 5 cut(s) | 608, 1296, 2113, 2362, 2847 |
| NmeAIII | GCCGAG | 2 cut(s) | 31, 2070 |
| NmuCI | GTSAC | 6 cut(s) | 73, 958, 1136, 1383, 2816, 2928 |
| NsiI | ATGCAT | 1 cut(s) | 1536 |
| PagI | TCATGA | 1 cut(s) | 2101 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 228, 2084 |
| PctI | GAATGC | 3 cut(s) | 94, 1583, 1955 |
| PdmI | GAANNNNTTC | 5 cut(s) | 305, 848, 1260, 1824, 2407 |
| PfeI | GAWTC | 3 cut(s) | 461, 830, 1736 |
| PfoI | TCCNGGA | 2 cut(s) | 1473, 2301 |
| PinAI | ACCGGT | 1 cut(s) | 2749 |
| PkrI | GCNGC | 7 cut(s) | 119, 165, 433, 819, 1061, 1751, 2319 |
| PleI | GAGTC | 1 cut(s) | 2894 |
| PmaCI | CACGTG | 1 cut(s) | 2088 |
| PmlI | CACGTG | 1 cut(s) | 2088 |
| PpsI | GAGTC | 1 cut(s) | 2894 |
| Ppu21I | YACGTR | 1 cut(s) | 2088 |
| PpuMI | RGGWCCY | 1 cut(s) | 607 |
| PshAI | GACNNNNGTC | 2 cut(s) | 80, 101 |
| PshBI | ATTAAT | 1 cut(s) | 1995 |
| PsiI | TTATAA | 2 cut(s) | 381, 2792 |
| Psp5II | RGGWCCY | 1 cut(s) | 607 |
| Psp6I | CCWGG | 2 cut(s) | 1473, 2301 |
| PspCI | CACGTG | 1 cut(s) | 2088 |
| PspEI | GGTNACC | 1 cut(s) | 958 |
| PspGI | CCWGG | 2 cut(s) | 1473, 2301 |
| PspN4I | GGNNCC | 5 cut(s) | 608, 1296, 2113, 2362, 2847 |
| PspPI | GGNCC | 6 cut(s) | 607, 1294, 1636, 2111, 2152, 2805 |
| PspPPI | RGGWCCY | 1 cut(s) | 607 |
| PsuI | RGATCY | 6 cut(s) | 189, 727, 1234, 2137, 2326, 2845 |
| PvuII | CAGCTG | 1 cut(s) | 205 |
| RsaI | GTAC | 5 cut(s) | 772, 1720, 2251, 2295, 2869 |
| RsaNI | GTAC | 5 cut(s) | 771, 1719, 2250, 2294, 2868 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1613, 2106 |
| SalI | GTCGAC | 1 cut(s) | 230 |
| SatI | GCNGC | 7 cut(s) | 118, 164, 432, 818, 1060, 1750, 2318 |
| Sau96I | GGNCC | 6 cut(s) | 607, 1294, 1636, 2111, 2152, 2805 |
| ScaI | AGTACT | 1 cut(s) | 2869 |
| SchI | GAGTC | 1 cut(s) | 2894 |
| ScrFI | CCNGG | 2 cut(s) | 1475, 2303 |
| SduI | GDGCHC | 3 cut(s) | 1969, 2168, 2540 |
| SfaNI | GCATC | 5 cut(s) | 142, 912, 1449, 2329, 2775 |
| SfcI | CTRYAG | 2 cut(s) | 1299, 1666 |
| SinI | GGWCC | 3 cut(s) | 607, 1636, 2152 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1613, 2106 |
| SmlI | CTYRAG | 2 cut(s) | 836, 1855 |
| SmoI | CTYRAG | 2 cut(s) | 836, 1855 |
| SsiI | CCGC | 5 cut(s) | 1244, 2318, 2367, 2641, 2660 |
| SspI | AATATT | 2 cut(s) | 534, 954 |
| SspMI | CTAG | 2 cut(s) | 239, 1724 |
| StyD4I | CCNGG | 2 cut(s) | 1473, 2301 |
| StyI | CCWWGG | 1 cut(s) | 2016 |
| TaaI | ACNGT | 9 cut(s) | 36, 46, 799, 909, 1053, 1907, 2509, 2622, 2816 |
| TaiI | ACGT | 3 cut(s) | 237, 2090, 2823 |
| TaqI | TCGA | 7 cut(s) | 86, 231, 335, 425, 1264, 1866, 2598 |
| TatI | WGTACW | 3 cut(s) | 2249, 2293, 2867 |
| TauI | GCSGC | 1 cut(s) | 2320 |
| TfiI | GAWTC | 3 cut(s) | 461, 830, 1736 |
| TseFI | GTSAC | 6 cut(s) | 73, 958, 1136, 1383, 2816, 2928 |
| TseI | GCWGC | 6 cut(s) | 117, 163, 431, 817, 1059, 1749 |
| Tsp45I | GTSAC | 6 cut(s) | 73, 958, 1136, 1383, 2816, 2928 |
| TspGWI | ACGGA | 1 cut(s) | 1628 |
| VpaK11BI | GGWCC | 3 cut(s) | 607, 1636, 2152 |
| VspI | ATTAAT | 1 cut(s) | 1995 |
| XmiI | GTMKAC | 1 cut(s) | 231 |
| XmnI | GAANNNNTTC | 5 cut(s) | 305, 848, 1260, 1824, 2407 |
| XspI | CTAG | 2 cut(s) | 239, 1724 |
| ZraI | GACGTC | 1 cut(s) | 2821 |
| ZrmI | AGTACT | 1 cut(s) | 2869 |
| Zsp2I | ATGCAT | 1 cut(s) | 1536 |