RchiOBHm_Chr2g0164491

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000018
Physical Location & Seq
Forward (+)
79584726 .. 79590427
5702 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53254

Sequence Viewer

Length: 2913 bp
ATGGCTGATGCACTCATCTCCGTGCTTCTGGAGCAATTGGCTTCAGTAGTATATCAACACACAAATCAAGCGGTGAAACTGGTTTTGAATGCTGAGAAAGACGTTAAAAGTTTCAGCAGCAAGCTCAAAGCTATCCAGGCTGTGCTTGAGGACGCAGAGAAGAAACAATTGACAGATGCTAGGGTGGAAGACTGGTTGGAGAAGCTGAAAGATGTCTCGTACGAGATGGACGACCTGCTAGATGAGTGGAACACTGAAATTCTCAGACGACAAGTGGAGGAGAAGCAAGAGAAGGAAGGAGAAAATGCTCCTGATACAAAGAAGAAGGTATGTTTCCCCATGTCCTCTGTTTGCTTTTGTTTTGGACAAGCCAATAAGGTCATTCATCGTCGTAACATAGCTAAAAGGATAGGGGAACTGAATGAGAAATTAACTTCGATTGCTGCTGAAAGAGAAATGTATGGCTTTCATCAGTCCACAAAAGGTGGCCCTGATGATCAGCAGCTTATTCAACGAAAAAAGACTACATCTTTGGTCGATATATCTACAATATTTGGCCGAGAAGAAGAAAAAGATATGTTGTTGAGCAAATTGTTGAGAGAGAGTAGCCCAGAAGAGGGGCGGTTCCTTATCATTCCTATTGTAGGGATGGGAGGGATGGGCAAAACAACTCTTGCCCAATTAGCTTATAATGATGAAAAGGTTACAAACCATTTTCATAAGAAAGTATGGGTTTGTGTCTCGAGCCCTTTTGACGAGATTAAGATTGCCAGAGCGATCATTGAGAGTCTATATAAAAATGAAACCCAAAAGAGTTCAAATGAATTGGAAACTCTATTACTATGTATAAGGTCACACGTTAAGGATAAGAAGTTACTTCTTGTCCTAGATGATGTGTGGACGGAAAACCAAAAAGAGTGGGAAAATTTGAAACTACCAGTAATAATGCAAAGTTGTGCTGAAGGTAGTAGAATACTAGTGACCACGCGAAAACAAGGGGTTGCTAAAATGATGAGAGCAAGTAGCATGATCTATTTAGACAAGTTGAGTGATAGAGATTGTCTGGCATTGTTCAATAGCATCGCATTTTTTGATAGGAAAAAAGATGAGGCTGCTGGATTTGGAGCTATTGGTGAGGAAATTGTGAAAAAGTGTAAAGGTTTGCCTCTTGCTGCAAAAACTTTAGGCAGTCTAGTGTGGTTTAAAAAAACAAGAGAGAAATGGCGCGATGTTCTGAATAGTAAGATATGGGAATTAGAAGAAGTTGAGGAACAAGTTTTCCGACCACTATTACTAAGTTATTATGATTTGACCCCAGCAGTCAAAAGATGTCTTTTGTGTTGTGCTATATTTCCCAAAGATTATCATTTCAAAAAAAATAATTTGATTGAGCTTTGGATGTCACAAGATTATCTTAATTCAAAGGAAAATAAAGAGAAAAGAAGAAAAGGTGAAAATTATTTTGAGAGTCTAGTAATGCGGTCTTTCTTTCAAGATTTTGACGGGAATGAGATGGGAGATATTTTAGGGTGCAAAATGCATGATATTGTGCATGACTTTGTGCAGTTTCTTACCAAAAAAGAATGCATTATTATAAAAGCAGCTAAAGGTGATAATCAAATAGTGGAGCTACCGGGTGATAAGGTTCGTCATTTGACCTTAACAAGTGTACCCGAAGGTCCACTTTCATTTCCTACTTCATGTTGCATGTGCAGAAATATACGTACGCTCTCAATCTTTAATTCAAGAATTACAACCATAAGCCCCGGTTCAATTTTGCAAATGAAATGCCTTAGAACATTGAATTTGAGTGATAGTGTCGTTAGTGAACTTCCAAAAGAGCTAGGTGAACTGATTCATTTGAGATATATGGATTTGTCTCATAATATGTATTTGAAAGAGTTACCGGATGCTGTGTGTGATTTATTCAATCTACAAACTCTGGTCCTTGTTTGGTGCGAGAAACTTGAGAAACTACCCAAGGCAATGGGAAAGTTGATCAACTTAAAGCATCTATATGTTCTGGGTTGTCGTGCGCTGAGGTACTTACCAAAAGGGATTGGGAGTTTGAAAAGTCTGCAAGCACTAGACTGCTTTTATGTATGTGAGGGTGGTGATACTGATAATGAAGCAGCAGCATTGAAATTAGGAGATCTCGGAATCATGGACCAGCTTCAGGGGAGCCTTGAGATAGATGGATTGGGGAATAAGGATGATGCGAGTGAGATTGAGAAAGCACAGTTGGGGAATAAGGAGCACCTCTCTCATTTGGGAGTAGTTTTCCAGGATGAATATGAAGAGCAGAGAAAAGGTGATGAAGAAATAGTGAAAGCATTGCAACCACATCAAAATTTGGAATCTTTAGACATTCGGTATTGCCACATTGGCACCACCGAGTCTCTCTATTGGATCAAGTCTCTACACAATTTGAGAAAAATTTATCTGGATGGTTGGCCAGTTTGTGAGTTTTTGCCTCCTCTTGGAAAATTGCCATCGCTTGAAATTCTGGAAATTGAGTGCATGGAGAAAGTGGAAAAGGTGGGAGTTGAGTTTCTGGGAATAGAACAAGAAACTGAAACACTCTCAGGAATTCTATTCCCCAGATTGGAACGACTTTATTTTCAGAGCATGGACAACTGGGAAGAGTGGGAAGGAATAACAAAGGAGGATTCTTCTTCTGAAGTTACAATAATGCCTCTCCTTTATATCTTGCAAATATCCGAGTGCCCAAATCTCATAGCACTGCCAGACTTCCTCTACAAGATAACAACACTGCATACTTTGACGATCGAGAGTTGTCCAATTCTCGAACAAGACTACGAAAAAGGCGTGGGGAAGGAGTGGCACAACATTTCTCACATCCCAAACCTCACAATTCGACCTGAATCTGAATCTGAATCTGAAGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

970

Amino Acids

110.93

Weight (kDa)

5.45

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 97 4.2e-22 Rx N-terminal domain
NB-ARC PF00931 188 - 364 4e-36 NB-ARC domain
WHD_DRP PF23559 450 - 521 2.1e-23 Disease resistance protein Winged helix domain
LRR_8 PF13855 572 - 629 2.1e-07 Leucine rich repeat
LRR_14 PF23598 574 - 875 3.7e-29 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 717 - 841 1.3e-25 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 690, 1595
Acc36I ACCTGC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 2387
AccII CGCG 2 cut(s) 988, 1227
AciI CCGC 3 cut(s) 71, 622, 1480
AclWI GGATC 1 cut(s) 2417
AcoI YGGCCR 2 cut(s) 556, 2453
AcsI RAATTY 7 cut(s) 258, 925, 1804, 2350, 2436, 2502, 2589
AcuI CTGAAG 4 cut(s) 27, 981, 2159, 2700
AfaI GTAC 4 cut(s) 221, 1671, 1726, 2045
AfiI CCNNNNNNNGG 6 cut(s) 616, 617, 644, 2176, 2480, 2605
AflIII ACRYGT 1 cut(s) 856
AhlI ACTAGT 1 cut(s) 976
AjnI CCWGG 2 cut(s) 135, 2283
AjuI GAANNNNNNNTTGG 2 cut(s) 2225, 2257
AloI GAACNNNNNNTCC 2 cut(s) 1263, 1295
Alw21I GWGCWC 1 cut(s) 2259
Alw26I GTCTC 5 cut(s) 220, 745, 1884, 2403, 2421
AlwI GGATC 1 cut(s) 2417
Ama87I CYCGRG 1 cut(s) 742
AoxI GGCC 3 cut(s) 487, 556, 2453
ApeKI GCWGC 8 cut(s) 117, 443, 502, 1112, 1172, 1601, 2132, 2135
ApoI RAATTY 7 cut(s) 258, 925, 1804, 2350, 2436, 2502, 2589
ArsI GACNNNNNNTTYG 2 cut(s) 514, 546
Asp700I GAANNNNTTC 1 cut(s) 1854
AspLEI GCGC 2 cut(s) 1227, 2038
AspS9I GGNCC 4 cut(s) 488, 1679, 1945, 2167
AsuC2I CCSGG 2 cut(s) 1635, 1767
AsuHPI GGTGA 8 cut(s) 85, 1145, 1463, 1622, 1649, 1859, 2126, 2324
AvaI CYCGRG 1 cut(s) 742
AvaII GGWCC 3 cut(s) 1679, 1945, 2167
BaeGI GKGCMC 1 cut(s) 2729
BaeI ACNNNNGTAYC 2 cut(s) 1653, 1686
BalI TGGCCA 1 cut(s) 2455
BanI GGYRCC 1 cut(s) 2387
BanII GRGCYC 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 2259
BbvCI CCTCAGC 1 cut(s) 2039
BbvI GCAGC 8 cut(s) 129, 430, 514, 1099, 1159, 1613, 2144, 2147
BccI CCATC 7 cut(s) 220, 643, 652, 1507, 2189, 2441, 2500
BciT130I CCWGG 2 cut(s) 137, 2285
BclI TGATCA 2 cut(s) 496, 1998
BcnI CCSGG 2 cut(s) 1635, 1767
BcoDI GTCTC 5 cut(s) 220, 745, 1884, 2403, 2421
BcuI ACTAGT 1 cut(s) 976
BfaI CTAG 8 cut(s) 180, 239, 887, 977, 1193, 1472, 1844, 2087
BfuAI ACCTGC 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 2385
BglII AGATCT 1 cut(s) 2152
BisI GCNGC 8 cut(s) 118, 444, 503, 1113, 1173, 1602, 2133, 2136
BlsI GCNGC 8 cut(s) 119, 445, 504, 1114, 1174, 1603, 2134, 2137
Bme1390I CCNGG 4 cut(s) 137, 1635, 1767, 2285
Bme18I GGWCC 3 cut(s) 1679, 1945, 2167
BmeT110I CYCGRG 1 cut(s) 742
BmgT120I GGNCC 4 cut(s) 488, 1679, 1945, 2167
BmiI GGNNCC 3 cut(s) 626, 2183, 2389
BmrFI CCNGG 4 cut(s) 137, 1635, 1767, 2285
BmrI ACTGGG 1 cut(s) 2647
BmsI GCATC 5 cut(s) 166, 1089, 1900, 2020, 2206
BmuI ACTGGG 1 cut(s) 2647
BpiI GAAGAC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 2246, 2278
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 2039
BpuEI CTTGAG 3 cut(s) 167, 1988, 2207
BpuMI CCSGG 2 cut(s) 1635, 1767
BsaAI YACGTR 1 cut(s) 1724
BsaJI CCNNGG 2 cut(s) 1765, 1980
BsaWI WCCGGW 1 cut(s) 1906
Bsc4I CCNNNNNNNGG 6 cut(s) 616, 617, 644, 2176, 2480, 2605
Bse1I ACTGG 5 cut(s) 84, 197, 938, 2456, 2642
Bse3DI GCAATG 2 cut(s) 1992, 2333
BseBI CCWGG 2 cut(s) 137, 2285
BseDI CCNNGG 2 cut(s) 1765, 1980
BseGI GGATG 8 cut(s) 654, 663, 1404, 1915, 2218, 2293, 2452, 2859
BseLI CCNNNNNNNGG 6 cut(s) 616, 617, 644, 2176, 2480, 2605
BseMI GCAATG 2 cut(s) 1992, 2333
BseMII CTCAG 4 cut(s) 84, 277, 2030, 2598
BseNI ACTGG 5 cut(s) 84, 197, 938, 2456, 2642
BseRI GAGGAG 2 cut(s) 293, 2466
BseSI GKGCMC 1 cut(s) 2729
BseXI GCAGC 8 cut(s) 129, 430, 514, 1099, 1159, 1613, 2144, 2147
BseYI CCCAGC 1 cut(s) 1315
BsgI GTGCAG 2 cut(s) 1583, 1732
Bsh1236I CGCG 2 cut(s) 988, 1227
Bsh1285I CGRYCG 1 cut(s) 2790
BshFI GGCC 3 cut(s) 489, 558, 2455
BshNI GGYRCC 1 cut(s) 2387
BsiEI CGRYCG 1 cut(s) 2790
BsiHKAI GWGCWC 1 cut(s) 2259
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 3 cut(s) 1634, 1767, 1907
BsiWI CGTACG 2 cut(s) 219, 1724
BslI CCNNNNNNNGG 6 cut(s) 616, 617, 644, 2176, 2480, 2605
BsmAI GTCTC 5 cut(s) 220, 745, 1884, 2403, 2421
BsmI GAATGC 2 cut(s) 94, 1589
BsnI GGCC 3 cut(s) 489, 558, 2455
BsoBI CYCGRG 1 cut(s) 742
Bsp1286I GDGCHC 3 cut(s) 749, 2259, 2729
Bsp143I GATC 7 cut(s) 496, 777, 1029, 1998, 2152, 2409, 2787
BspACI CCGC 3 cut(s) 71, 622, 1480
BspANI GGCC 3 cut(s) 489, 558, 2455
BspCNI CTCAG 4 cut(s) 85, 276, 2031, 2597
BspFNI CGCG 2 cut(s) 988, 1227
BspLI GGNNCC 3 cut(s) 626, 2183, 2389
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 2417
BspQI GCTCTTC 1 cut(s) 2292
BspT107I GGYRCC 1 cut(s) 2387
BsrDI GCAATG 2 cut(s) 1992, 2333
BsrI ACTGG 5 cut(s) 84, 197, 938, 2456, 2642
BssECI CCNNGG 2 cut(s) 1765, 1980
BssMI GATC 7 cut(s) 496, 777, 1029, 1998, 2152, 2409, 2787
BssT1I CCWWGG 1 cut(s) 1980
Bst2UI CCWGG 2 cut(s) 137, 2285
Bst4CI ACNGT 1 cut(s) 2241
Bst6I CTCTTC 3 cut(s) 609, 2292, 2637
BstBAI YACGTR 1 cut(s) 1724
BstC8I GCNNGC 2 cut(s) 122, 2082
BstDEI CTNAG 6 cut(s) 93, 263, 1295, 1793, 2039, 2584
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 8 cut(s) 654, 663, 1404, 1915, 2218, 2293, 2452, 2859
BstFNI CGCG 2 cut(s) 988, 1227
BstHHI GCGC 2 cut(s) 1227, 2038
BstKTI GATC 7 cut(s) 499, 780, 1032, 2001, 2155, 2412, 2790
BstMAI GTCTC 5 cut(s) 220, 745, 1884, 2403, 2421
BstMBI GATC 7 cut(s) 496, 777, 1029, 1998, 2152, 2409, 2787
BstMCI CGRYCG 1 cut(s) 2790
BstMWI GCNNNNNNNGC 4 cut(s) 31, 137, 683, 2385
BstNI CCWGG 2 cut(s) 137, 2285
BstNSI RCATGY 1 cut(s) 1711
BstSCI CCNGG 4 cut(s) 135, 1633, 1765, 2283
BstSLI GKGCMC 1 cut(s) 2729
BstSNI TACGTA 1 cut(s) 1724
BstUI CGCG 2 cut(s) 988, 1227
BstV1I GCAGC 8 cut(s) 129, 430, 514, 1099, 1159, 1613, 2144, 2147
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 2152
BstXI CCANNNNNNTGG 1 cut(s) 1987
BstYI RGATCY 1 cut(s) 2152
BsuRI GGCC 3 cut(s) 489, 558, 2455
BtgZI GCGATG 3 cut(s) 1066, 1242, 2478
BtsCI GGATG 8 cut(s) 654, 663, 1404, 1915, 2218, 2293, 2452, 2859
BtsI GCAGTG 2 cut(s) 2741, 2771
BtsIMutI CAGTG 3 cut(s) 252, 2741, 2771
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 122, 2082
CfoI GCGC 2 cut(s) 1227, 2038
Cfr13I GGNCC 4 cut(s) 488, 1679, 1945, 2167
CseI GACGC 1 cut(s) 161
Csp6I GTAC 4 cut(s) 220, 1670, 1725, 2044
CspCI CAANNNNNGTGG 2 cut(s) 899, 934
CviAII CATG 9 cut(s) 340, 1027, 1541, 1553, 1701, 1708, 2164, 2521, 2629
CviQI GTAC 4 cut(s) 220, 1670, 1725, 2044
DdeI CTNAG 6 cut(s) 93, 263, 1295, 1793, 2039, 2584
DpnI GATC 7 cut(s) 498, 779, 1031, 2000, 2154, 2411, 2789
DpnII GATC 7 cut(s) 496, 777, 1029, 1998, 2152, 2409, 2787
DraI TTTAAA 1 cut(s) 1204
EaeI YGGCCR 2 cut(s) 556, 2453
Eam1104I CTCTTC 3 cut(s) 609, 2292, 2637
EarI CTCTTC 3 cut(s) 609, 2292, 2637
Eco105I TACGTA 1 cut(s) 1724
Eco130I CCWWGG 1 cut(s) 1980
Eco24I GRGCYC 1 cut(s) 749
Eco47I GGWCC 3 cut(s) 1679, 1945, 2167
Eco57I CTGAAG 4 cut(s) 27, 981, 2159, 2700
Eco88I CYCGRG 1 cut(s) 742
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoRI GAATTC 1 cut(s) 2589
EcoRII CCWGG 2 cut(s) 135, 2283
EcoT14I CCWWGG 1 cut(s) 1980
EcoT22I ATGCAT 2 cut(s) 1542, 1589
EcoT38I GRGCYC 1 cut(s) 749
ErhI CCWWGG 1 cut(s) 1980
FaeI CATG 9 cut(s) 343, 1030, 1544, 1556, 1704, 1711, 2167, 2524, 2632
FalI AAGNNNNNCTT 4 cut(s) 1398, 1430, 1668, 1700
FatI CATG 9 cut(s) 339, 1026, 1540, 1552, 1700, 1707, 2163, 2520, 2628
FbaI TGATCA 2 cut(s) 496, 1998
Fnu4HI GCNGC 8 cut(s) 118, 444, 503, 1113, 1173, 1602, 2133, 2136
FokI GGATG 8 cut(s) 661, 670, 1411, 1922, 2225, 2300, 2459, 2846
FriOI GRGCYC 1 cut(s) 749
Fsp4HI GCNGC 8 cut(s) 118, 444, 503, 1113, 1173, 1602, 2133, 2136
FspBI CTAG 8 cut(s) 180, 239, 887, 977, 1193, 1472, 1844, 2087
GlaI GCGC 2 cut(s) 1226, 2037
GluI GCNGC 8 cut(s) 118, 444, 503, 1113, 1173, 1602, 2133, 2136
GsaI CCCAGC 1 cut(s) 1319
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 3 cut(s) 489, 558, 2455
HapII CCGG 3 cut(s) 1634, 1767, 1907
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 1227, 2038
Hin1II CATG 9 cut(s) 343, 1030, 1544, 1556, 1704, 1711, 2167, 2524, 2632
Hin6I GCGC 2 cut(s) 1225, 2036
HinP1I GCGC 2 cut(s) 1225, 2036
HpaII CCGG 3 cut(s) 1634, 1767, 1907
HphI GGTGA 8 cut(s) 85, 1145, 1463, 1622, 1649, 1859, 2126, 2324
Hpy166II GTNNAC 6 cut(s) 477, 900, 1670, 1682, 1829, 1850
Hpy8I GTNNAC 6 cut(s) 477, 900, 1670, 1682, 1829, 1850
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 7 cut(s) 286, 290, 319, 956, 1670, 2645, 2830
HpyCH4III ACNGT 1 cut(s) 2241
HpyCH4IV ACGT 3 cut(s) 102, 858, 1723
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 137, 683, 2385
HpyF3I CTNAG 6 cut(s) 93, 263, 1295, 1793, 2039, 2584
HpySE526I ACGT 3 cut(s) 102, 858, 1723
Hsp92II CATG 9 cut(s) 343, 1030, 1544, 1556, 1704, 1711, 2167, 2524, 2632
HspAI GCGC 2 cut(s) 1225, 2036
Ksp22I TGATCA 2 cut(s) 496, 1998
Kzo9I GATC 7 cut(s) 496, 777, 1029, 1998, 2152, 2409, 2787
LguI GCTCTTC 1 cut(s) 2292
LmnI GCTCC 6 cut(s) 31, 313, 1124, 1627, 2181, 2254
Lsp1109I GCAGC 8 cut(s) 129, 430, 514, 1099, 1159, 1613, 2144, 2147
LweI GCATC 5 cut(s) 166, 1089, 1900, 2020, 2206
MaeI CTAG 8 cut(s) 180, 239, 887, 977, 1193, 1472, 1844, 2087
MaeII ACGT 3 cut(s) 102, 858, 1723
MaeIII GTNAC 8 cut(s) 392, 703, 852, 873, 979, 1401, 1902, 2683
MalI GATC 7 cut(s) 498, 779, 1031, 2000, 2154, 2411, 2789
MboI GATC 7 cut(s) 496, 777, 1029, 1998, 2152, 2409, 2787
MfeI CAATTG 2 cut(s) 35, 167
MflI RGATCY 1 cut(s) 2152
MhlI GDGCHC 3 cut(s) 749, 2259, 2729
MlsI TGGCCA 1 cut(s) 2455
MluNI TGGCCA 1 cut(s) 2455
MlyI GAGTC 3 cut(s) 796, 1477, 2405
MmeI TCCRAC 2 cut(s) 177, 1306
Mox20I TGGCCA 1 cut(s) 2455
Mph1103I ATGCAT 2 cut(s) 1542, 1589
MroXI GAANNNNTTC 1 cut(s) 1854
MscI TGGCCA 1 cut(s) 2455
MseI TTAA 9 cut(s) 105, 431, 762, 861, 1203, 1416, 1661, 1740, 2006
MslI CAYNNNNRTG 2 cut(s) 20, 2016
Msp20I TGGCCA 1 cut(s) 2455
MspI CCGG 3 cut(s) 1634, 1767, 1907
MspR9I CCNGG 4 cut(s) 137, 1635, 1767, 2285
MunI CAATTG 2 cut(s) 35, 167
Mva1269I GAATGC 2 cut(s) 94, 1589
MvaI CCWGG 2 cut(s) 137, 2285
MvnI CGCG 2 cut(s) 988, 1227
MwoI GCNNNNNNNGC 4 cut(s) 31, 137, 683, 2385
NciI CCSGG 2 cut(s) 1635, 1767
NdeII GATC 7 cut(s) 496, 777, 1029, 1998, 2152, 2409, 2787
NlaIII CATG 9 cut(s) 343, 1030, 1544, 1556, 1704, 1711, 2167, 2524, 2632
NlaIV GGNNCC 3 cut(s) 626, 2183, 2389
NmeAIII GCCGAG 1 cut(s) 584
NmuCI GTSAC 3 cut(s) 852, 979, 1401
NsiI ATGCAT 2 cut(s) 1542, 1589
NspI RCATGY 1 cut(s) 1711
PaeR7I CTCGAG 1 cut(s) 742
PciSI GCTCTTC 1 cut(s) 2292
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 2826
PctI GAATGC 2 cut(s) 94, 1589
PdmI GAANNNNTTC 1 cut(s) 1854
PfeI GAWTC 7 cut(s) 1855, 2160, 2357, 2669, 2885, 2891, 2897
Pfl23II CGTACG 2 cut(s) 219, 1724
PfoI TCCNGGA 1 cut(s) 2283
PkrI GCNGC 8 cut(s) 119, 445, 504, 1114, 1174, 1603, 2134, 2137
Ple19I CGATCG 1 cut(s) 2790
PleI GAGTC 3 cut(s) 795, 1476, 2404
PpsI GAGTC 3 cut(s) 795, 1476, 2404
Ppu21I YACGTR 1 cut(s) 1724
PsiI TTATAA 2 cut(s) 690, 1595
Psp6I CCWGG 2 cut(s) 135, 2283
PspFI CCCAGC 1 cut(s) 1315
PspGI CCWGG 2 cut(s) 135, 2283
PspLI CGTACG 2 cut(s) 219, 1724
PspN4I GGNNCC 3 cut(s) 626, 2183, 2389
PspPI GGNCC 4 cut(s) 488, 1679, 1945, 2167
PsuI RGATCY 1 cut(s) 2152
PvuI CGATCG 1 cut(s) 2790
RsaI GTAC 4 cut(s) 221, 1671, 1726, 2045
RsaNI GTAC 4 cut(s) 220, 1670, 1725, 2044
RseI CAYNNNNRTG 2 cut(s) 20, 2016
SapI GCTCTTC 1 cut(s) 2292
SaqAI TTAA 9 cut(s) 105, 431, 762, 861, 1203, 1416, 1661, 1740, 2006
SatI GCNGC 8 cut(s) 118, 444, 503, 1113, 1173, 1602, 2133, 2136
Sau3AI GATC 7 cut(s) 496, 777, 1029, 1998, 2152, 2409, 2787
Sau96I GGNCC 4 cut(s) 488, 1679, 1945, 2167
SchI GAGTC 3 cut(s) 796, 1477, 2405
ScrFI CCNGG 4 cut(s) 137, 1635, 1767, 2285
SduI GDGCHC 3 cut(s) 749, 2259, 2729
SfaNI GCATC 5 cut(s) 166, 1089, 1900, 2020, 2206
Sfr274I CTCGAG 1 cut(s) 742
SinI GGWCC 3 cut(s) 1679, 1945, 2167
SlaI CTCGAG 1 cut(s) 742
SmiMI CAYNNNNRTG 2 cut(s) 20, 2016
SmlI CTYRAG 4 cut(s) 146, 742, 1967, 2186
SmoI CTYRAG 4 cut(s) 146, 742, 1967, 2186
SnaBI TACGTA 1 cut(s) 1724
SpeI ACTAGT 1 cut(s) 976
SsiI CCGC 3 cut(s) 71, 622, 1480
SspI AATATT 1 cut(s) 552
SspMI CTAG 8 cut(s) 180, 239, 887, 977, 1193, 1472, 1844, 2087
StyD4I CCNGG 4 cut(s) 135, 1633, 1765, 2283
StyI CCWWGG 1 cut(s) 1980
TaaI ACNGT 1 cut(s) 2241
TaiI ACGT 3 cut(s) 105, 861, 1726
TaqI TCGA 6 cut(s) 437, 537, 743, 2790, 2808, 2878
TfiI GAWTC 7 cut(s) 1855, 2160, 2357, 2669, 2885, 2891, 2897
Tru1I TTAA 9 cut(s) 105, 431, 762, 861, 1203, 1416, 1661, 1740, 2006
Tru9I TTAA 9 cut(s) 105, 431, 762, 861, 1203, 1416, 1661, 1740, 2006
TscAI CASTG 3 cut(s) 259, 2748, 2778
TseFI GTSAC 3 cut(s) 852, 979, 1401
TseI GCWGC 8 cut(s) 117, 443, 502, 1112, 1172, 1601, 2132, 2135
Tsp45I GTSAC 3 cut(s) 852, 979, 1401
TspGWI ACGGA 2 cut(s) 10, 917
TspRI CASTG 3 cut(s) 259, 2748, 2778
VpaK11BI GGWCC 3 cut(s) 1679, 1945, 2167
XagI CCTNNNNNAGG 1 cut(s) 642
XapI RAATTY 7 cut(s) 258, 925, 1804, 2350, 2436, 2502, 2589
XceI RCATGY 1 cut(s) 1711
XhoI CTCGAG 1 cut(s) 742
XmnI GAANNNNTTC 1 cut(s) 1854
XspI CTAG 8 cut(s) 180, 239, 887, 977, 1193, 1472, 1844, 2087
Zsp2I ATGCAT 2 cut(s) 1542, 1589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.