RchiOBHm_Chr7g0229781

disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
53339620 .. 53342959
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20586

Sequence Viewer

Length: 2979 bp
ATGCTTAGTAGAAGAGAGGCCAGAGCACACTCATCCAACAATTTCATATTCGATCATCTCTTCTTTTTCTCTTACAAATATAATCAAGTTCTAACACGAAAAATGGCTGAGGCACTCATCTCTGTGCTTCTGGAGCAATTGGTTTCAGCAGTATATCAACACACAAATGAAGCGGTGAAACTGGTTTTGAATGCTGACAAAGATGTTAAAAGTTTCAGCAGCAAGCTCAAAGCTATCCAGGCTGTACTTGAGGATGCCGAGAAGAAACAAGTGACAGAGGCCAGCGTGGGCGACTGGTTGCAGAAGCTCAAAGATGTGTCGTACGAGATGGACGACGTGCTAGATGAGTGGAACATTGAACTTCTCAGACAACAAGCGGAGGAGAAGCAAGAGGTGGAAGGAGATAATGCTCTTGTTACCAAGAAGAAGGTACGTTTCCCCATGTCCTCCGGTTGCTTTTGTTTTGGTCAAGTCAATAAGGTCATTCATCATCATAACATAGCTAGAAGGATAAAGGAACTGAATGAGAAGTTAACTTTGATTGCTGCTGAAAGAGAAATGTATGGCTTTCATCAATCCACAATAGGTGACCATCATGAGCGGTTTATTCAACGACAGACTTCATCTTTGGTCGATGTATCTGCGATATTTGGCCGAGAAGAAGAAAAAGAGTATTTGTTGAGCAAGTTGTTGAGAGAGAGTAATCAAGATGGGGGGAGGTTCCTTGTCATCCCTATTGTAGGGATGGGAGGGATGGGGAAAACTACTCTTGCCCAACTGGCCTATAACAATGAAAAGGTTACAGCCCATTTCAACAAGAAAGTATGGGTTTGTGTCTCAGACCCTTTTGATGAGGTTAAGATTGCGAAAGCGATCATTGAAAATCTAGATAGAACCCAAAGCGGTTCAAATGAGTTGGAAATTTTATTGCAATCTATCAAGAGACGTGTGGAGGATGAGAAGTTTCTTCTTGTACTAGATGATGTGTGGACGGAAGACCATAAAAAGTGGGAAAATTTGAAACTACCAATTATAATGCAAAGTTGTGCTAAGGGCAGTACAATACTGGTGACCACGCGAAAAGAAGGGGTTGCTAAAATGATGAGAGCAACCAAAAGCACAATCCATTTGGACAAGTTGAGCGATAAGGATTGTCTCGCATTGTTCAATAGCTTTGCATTTTTGGATAAGGAAGAAGATGAGGCTAACGGGTTTGGAGCTATTGGTGAGGAAATTGTGAAAAAGTGTAAAGGTTTGCCTCTTGCTGCAAAGACTTTGGGCAGTGTAGTGTTGCATAAGAAAACAAGAGAGGAATGGCAGAATGTTCTGAATAGTAAGATATGGGAATTAGAAGAAGTTGAGGAACAAGTTTTCCGACCACTATTACTTAGTTATTATGATTTGGCCCCTGCAGTCAAAAGATGTCTTCTGTATTGTGCAATATTTCCCAAAGATTATGACTTCAAAAAAGATAATTTGATTGAACTTTGGATGTCACAAGATTATCTTAATTCAAAGGGAAAAAAAGAAAAAAGAAGAATAGGTCAATATTATTTTGAGAGTCTAGCAATGCGGTCTTTCTTTCAAGATTTTGAAAAAGATGAGATGGGAAATATTATAGAGTGCAAAATGCATGATATTGTGCATGATTTTGTGCTGTTTCTTAGTAAAAATGAATGCATTATTATAGAAGCGATTGAGGGTATTAATCAAAGAATAGAGCTATCGAGTGATAAGATTCGTCATTTGACCTTAATAAGTGTACCCGAAGGTCCACTTCCTACTTTGTGTTACGGGTGTAAAAATATGCGTAGCCTTATACTCCTTCATTCAAGCATTACAACCATAAGCCGCGGTTCAATTATACAAATGAAATGCCTTAGGACATTGAATTTGAGCGGTAACAAGATATCCGGTAGCATGCTCAATGAAGTTCCAAAAGAGATTGGTGAATTGATTCATTTGAGATATATGGATTTGTCTCATAATTGGAATTTGAAAGAATTACCGGATGCTATGTGTGAATTATACAATCTACAAACTCTGGTCCTTGTGTACACGTGTCTTTGGAAACTACCAAAGGCAATGGGAAAGTTGATTAACTTGAAGCATCTATATGTTGGGGGTTGTGGTAACCTAAGGTACTTACCGAAAGGGATTGGGAGTTTGAAAAGTCTGCAAGTACTAGACTGGTTTAAAGTGTGTGAGGGTGATGATGAAGCATTGAAATTAGGAAATCTCGGAGTCATGGACCAGCTTCAGGGGAGCCTTGACATACGAGGGTTGGGGAAAGATGATGCGAGTGAGATTGAGAAAGCACTGTTGGGGAATAAGGAGCACCTCTCTCATTTGGGAGTAGGTTTCCAGTTTGCACTTGGAGAGCAGAGAAAAGGTGATTCAGAAATAGTGAAAGCATTGCAACCACATCAAAATTTGGAATCTTTAACCATTCGGTGTTGCCATGGCACCACCGAGTCTCTCTATTGGATCAAGTCTCTACACAATTTGAGAAAACTTTATCTCAGTTATTGGGAATTTTGTGAAGTTTTGCCTCCTCTTGGAAAATTGCCATCGCTTGAAATTCTGGATATATGGGAGATGAAGAAAGTGAAAAAAGTGAGAGTTGAATTTCTGGGAATAGAAGAAGAAGAAGAAGAAGAAGAAGTCTCAGGAATTCTATTCCCCAAATTGAAAAAACTCACTTTTTTTGGAATGAAGAACTGGGAAGAGTGGGCCCTTCTTTCTGAAATCACAATAATGCCACGCCTTTCTGAGTTGCGAATTAAGTGGTGCCCAAAGCTAAAAGCACTGCCAAAGTTCCTCTACAAGATACCAGAACTGCGTACTTTGGAGATTAAGGGTTGTCCAATTCTGGAAGGAGAATACGAAAAAGGCGTGGGGAAGGAGTGGCACAACATTTCTCACATCCCAAACCTCACAATCCAATCTGGATGGAAGCGAACTTATGTTGTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

992

Amino Acids

114.02

Weight (kDa)

6.74

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 40 - 130 1.5e-20 Rx N-terminal domain
NB-ARC PF00931 220 - 396 5.6e-36 NB-ARC domain
WHD_DRP PF23559 481 - 552 3.8e-24 Disease resistance protein Winged helix domain
LRR_8 PF13855 598 - 637 3.6e-06 Leucine rich repeat
LRR_14 PF23598 603 - 930 2.2e-35 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 744 - 867 1.5e-23 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1034
AccB1I GGYRCC 2 cut(s) 2465, 2790
AccBSI CCGCTC 2 cut(s) 601, 1899
AccII CGCG 2 cut(s) 1078, 1854
AciI CCGC 8 cut(s) 173, 377, 601, 903, 1573, 1852, 1854, 1899
AclWI GGATC 1 cut(s) 2495
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 9 cut(s) 921, 1015, 1891, 1993, 2431, 2534, 2580, 2627, 2673
AcuI CTGAAG 1 cut(s) 2243
AcvI CACGTG 1 cut(s) 2061
AfiI CCNNNNNNNGG 3 cut(s) 740, 2260, 2558
AflIII ACRYGT 3 cut(s) 946, 2058, 2060
AjiI CACGTC 2 cut(s) 337, 947
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 2306, 2338
AloI GAACNNNNNNTCC 2 cut(s) 1356, 1388
AluBI AGCT 9 cut(s) 226, 233, 307, 503, 1173, 1220, 1723, 2257, 2800
AluI AGCT 9 cut(s) 226, 233, 307, 503, 1173, 1220, 1723, 2257, 2800
Alw21I GWGCWC 2 cut(s) 28, 2340
Alw26I GTCTC 7 cut(s) 841, 937, 1160, 1986, 2481, 2499, 2671
AlwI GGATC 1 cut(s) 2495
AoxI GGCC 6 cut(s) 18, 279, 652, 780, 1404, 2733
ApaI GGGCCC 1 cut(s) 2737
ApeKI GCWGC 3 cut(s) 219, 545, 1265
ApoI RAATTY 9 cut(s) 921, 1015, 1891, 1993, 2431, 2534, 2580, 2627, 2673
ArsI GACNNNNNNTTYG 4 cut(s) 610, 642, 1876, 1908
AseI ATTAAT 1 cut(s) 1707
Asp700I GAANNNNTTC 1 cut(s) 1956
AspS9I GGNCC 6 cut(s) 1405, 1772, 2047, 2251, 2733, 2734
AsuHPI GGTGA 7 cut(s) 187, 599, 1081, 1238, 1961, 2222, 2405
AvaII GGWCC 3 cut(s) 1772, 2047, 2251
AxyI CCTNAGG 2 cut(s) 1880, 2138
BaeGI GKGCMC 2 cut(s) 2737, 2795
BanI GGYRCC 2 cut(s) 2465, 2790
BanII GRGCYC 1 cut(s) 2737
BbrPI CACGTG 1 cut(s) 2061
BbsI GAAGAC 2 cut(s) 1002, 1418
Bbv12I GWGCWC 2 cut(s) 28, 2340
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 3 cut(s) 231, 532, 1252
BccI CCATC 8 cut(s) 322, 600, 704, 739, 748, 1600, 2578, 2946
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 7 cut(s) 841, 937, 1160, 1986, 2481, 2499, 2671
BfaI CTAG 6 cut(s) 341, 504, 887, 977, 1565, 2186
BfmI CTRYAG 1 cut(s) 1410
BglI GCCNNNNNGGC 1 cut(s) 779
BisI GCNGC 4 cut(s) 220, 546, 1266, 1852
BlsI GCNGC 4 cut(s) 221, 547, 1267, 1853
BmcAI AGTACT 1 cut(s) 2184
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 3 cut(s) 1772, 2047, 2251
BmgBI CACGTC 2 cut(s) 337, 947
BmgT120I GGNCC 6 cut(s) 1405, 1772, 2047, 2251, 2733, 2734
BmiI GGNNCC 6 cut(s) 722, 1407, 2267, 2467, 2735, 2792
BmrFI CCNGG 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 2731
BmsI GCATC 4 cut(s) 244, 2002, 2119, 2287
BmuI ACTGGG 1 cut(s) 2731
BpiI GAAGAC 2 cut(s) 1002, 1418
BplI GAGNNNNNCTC 2 cut(s) 2327, 2359
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 2 cut(s) 108, 1050
BpuEI CTTGAG 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 2061
BsaJI CCNNGG 2 cut(s) 1852, 2461
BsaWI WCCGGW 3 cut(s) 449, 1913, 2008
Bsc4I CCNNNNNNNGG 3 cut(s) 740, 2260, 2558
Bse1I ACTGG 7 cut(s) 186, 299, 783, 1071, 2195, 2365, 2726
Bse21I CCTNAGG 2 cut(s) 1880, 2138
Bse3DI GCAATG 3 cut(s) 1575, 2091, 2414
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 1852, 2461
BseLI CCNNNNNNNGG 3 cut(s) 740, 2260, 2558
BseMI GCAATG 3 cut(s) 1575, 2091, 2414
BseMII CTCAG 6 cut(s) 99, 379, 852, 2536, 2682, 2763
BseNI ACTGG 7 cut(s) 186, 299, 783, 1071, 2195, 2365, 2726
BseRI GAGGAG 2 cut(s) 395, 2544
BseSI GKGCMC 2 cut(s) 2737, 2795
BseXI GCAGC 3 cut(s) 231, 532, 1252
Bsh1236I CGCG 2 cut(s) 1078, 1854
BshFI GGCC 6 cut(s) 20, 281, 654, 782, 1406, 2735
BshNI GGYRCC 2 cut(s) 2465, 2790
BsiHKAI GWGCWC 2 cut(s) 28, 2340
BsiSI CCGG 3 cut(s) 450, 1914, 2009
BsiWI CGTACG 1 cut(s) 321
BslI CCNNNNNNNGG 3 cut(s) 740, 2260, 2558
BsmAI GTCTC 7 cut(s) 841, 937, 1160, 1986, 2481, 2499, 2671
BsmBI CGTCTC 1 cut(s) 937
BsmI GAATGC 2 cut(s) 196, 1682
BsnI GGCC 6 cut(s) 20, 281, 654, 782, 1406, 2735
Bsp120I GGGCCC 1 cut(s) 2733
Bsp1286I GDGCHC 4 cut(s) 28, 2340, 2737, 2795
Bsp1407I TGTACA 1 cut(s) 2055
Bsp143I GATC 3 cut(s) 52, 873, 2487
Bsp19I CCATGG 1 cut(s) 2461
BspACI CCGC 8 cut(s) 173, 377, 601, 903, 1573, 1852, 1854, 1899
BspANI GGCC 6 cut(s) 20, 281, 654, 782, 1406, 2735
BspCNI CTCAG 6 cut(s) 100, 378, 851, 2535, 2681, 2764
BspFNI CGCG 2 cut(s) 1078, 1854
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 6 cut(s) 722, 1407, 2267, 2467, 2735, 2792
BspMAI CTGCAG 1 cut(s) 1414
BspPI GGATC 1 cut(s) 2495
BspT107I GGYRCC 2 cut(s) 2465, 2790
BsrBI CCGCTC 2 cut(s) 601, 1899
BsrDI GCAATG 3 cut(s) 1575, 2091, 2414
BsrGI TGTACA 1 cut(s) 2055
BsrI ACTGG 7 cut(s) 186, 299, 783, 1071, 2195, 2365, 2726
BssECI CCNNGG 2 cut(s) 1852, 2461
BssMI GATC 3 cut(s) 52, 873, 2487
BssT1I CCWWGG 1 cut(s) 2461
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 2322
Bst6I CTCTTC 3 cut(s) 7, 65, 2721
BstAUI TGTACA 1 cut(s) 2055
BstBAI YACGTR 1 cut(s) 2061
BstC8I GCNNGC 3 cut(s) 224, 283, 1922
BstDSI CCRYGG 2 cut(s) 1852, 2461
BstEII GGTNACC 3 cut(s) 587, 1069, 2132
BstENI CCTNNNNNAGG 1 cut(s) 738
BstFNI CGCG 2 cut(s) 1078, 1854
BstKTI GATC 3 cut(s) 55, 876, 2490
BstMAI GTCTC 7 cut(s) 841, 937, 1160, 1986, 2481, 2499, 2671
BstMBI GATC 3 cut(s) 52, 873, 2487
BstMWI GCNNNNNNNGC 3 cut(s) 133, 239, 779
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 1924
BstPI GGTNACC 3 cut(s) 587, 1069, 2132
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 1410
BstSLI GKGCMC 2 cut(s) 2737, 2795
BstUI CGCG 2 cut(s) 1078, 1854
BstV1I GCAGC 3 cut(s) 231, 532, 1252
BstV2I GAAGAC 2 cut(s) 1002, 1418
Bsu36I CCTNAGG 2 cut(s) 1880, 2138
BsuRI GGCC 6 cut(s) 20, 281, 654, 782, 1406, 2735
BtgI CCRYGG 2 cut(s) 1852, 2461
BtgZI GCGATG 1 cut(s) 2556
BtrI CACGTC 2 cut(s) 337, 947
BtsI GCAGTG 2 cut(s) 1288, 2807
BtsIMutI CAGTG 3 cut(s) 1288, 2318, 2807
Cac8I GCNNGC 3 cut(s) 224, 283, 1922
CciI TCATGA 1 cut(s) 595
Cfr13I GGNCC 6 cut(s) 1405, 1772, 2047, 2251, 2733, 2734
Cfr42I CCGCGG 1 cut(s) 1855
CviAII CATG 7 cut(s) 442, 596, 1634, 1646, 1921, 2248, 2462
DpnI GATC 3 cut(s) 54, 875, 2489
DpnII GATC 3 cut(s) 52, 873, 2487
DraI TTTAAA 1 cut(s) 2197
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 3 cut(s) 7, 65, 2721
EarI CTCTTC 3 cut(s) 7, 65, 2721
Eco130I CCWWGG 1 cut(s) 2461
Eco24I GRGCYC 1 cut(s) 2737
Eco32I GATATC 1 cut(s) 1911
Eco47I GGWCC 3 cut(s) 1772, 2047, 2251
Eco57I CTGAAG 1 cut(s) 2243
Eco72I CACGTG 1 cut(s) 2061
Eco81I CCTNAGG 2 cut(s) 1880, 2138
Eco91I GGTNACC 3 cut(s) 587, 1069, 2132
EcoNI CCTNNNNNAGG 1 cut(s) 738
EcoO109I RGGNCCY 1 cut(s) 2734
EcoO65I GGTNACC 3 cut(s) 587, 1069, 2132
EcoRI GAATTC 1 cut(s) 2673
EcoRII CCWGG 1 cut(s) 237
EcoRV GATATC 1 cut(s) 1911
EcoT14I CCWWGG 1 cut(s) 2461
EcoT22I ATGCAT 2 cut(s) 1635, 1682
EcoT38I GRGCYC 1 cut(s) 2737
ErhI CCWWGG 1 cut(s) 2461
Esp3I CGTCTC 1 cut(s) 937
FaeI CATG 7 cut(s) 445, 599, 1637, 1649, 1924, 2251, 2465
FalI AAGNNNNNCTT 4 cut(s) 1491, 1523, 1761, 1793
FatI CATG 7 cut(s) 441, 595, 1633, 1645, 1920, 2247, 2461
Fnu4HI GCNGC 4 cut(s) 220, 546, 1266, 1852
FriOI GRGCYC 1 cut(s) 2737
Fsp4HI GCNGC 4 cut(s) 220, 546, 1266, 1852
FspBI CTAG 6 cut(s) 341, 504, 887, 977, 1565, 2186
GluI GCNGC 4 cut(s) 220, 546, 1266, 1852
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 6 cut(s) 20, 281, 654, 782, 1406, 2735
HapII CCGG 3 cut(s) 450, 1914, 2009
Hin1II CATG 7 cut(s) 445, 599, 1637, 1649, 1924, 2251, 2465
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HinfI GANTC 7 cut(s) 1561, 1738, 1957, 2244, 2396, 2438, 2474
HpaI GTTAAC 1 cut(s) 534
HpaII CCGG 3 cut(s) 450, 1914, 2009
HphI GGTGA 7 cut(s) 187, 599, 1081, 1238, 1961, 2222, 2405
Hpy166II GTNNAC 6 cut(s) 534, 990, 1763, 1775, 2056, 2058
Hpy188I TCNGA 8 cut(s) 368, 841, 1329, 1376, 2243, 2401, 2746, 2773
Hpy8I GTNNAC 6 cut(s) 534, 990, 1763, 1775, 2056, 2058
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 9 cut(s) 392, 421, 501, 1079, 1763, 1835, 2747, 2870, 2896
HpyCH4III ACNGT 1 cut(s) 2322
HpyCH4IV ACGT 4 cut(s) 336, 433, 946, 2060
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 239, 779
HpySE526I ACGT 4 cut(s) 336, 433, 946, 2060
Hsp92II CATG 7 cut(s) 445, 599, 1637, 1649, 1924, 2251, 2465
KspAI GTTAAC 1 cut(s) 534
KspI CCGCGG 1 cut(s) 1855
Kzo9I GATC 3 cut(s) 52, 873, 2487
LmnI GCTCC 4 cut(s) 133, 1217, 2265, 2335
Lsp1109I GCAGC 3 cut(s) 231, 532, 1252
LweI GCATC 4 cut(s) 244, 2002, 2119, 2287
MaeI CTAG 6 cut(s) 341, 504, 887, 977, 1565, 2186
MaeII ACGT 4 cut(s) 336, 433, 946, 2060
MaeIII GTNAC 9 cut(s) 271, 415, 587, 799, 1069, 1494, 1790, 1901, 2132
MalI GATC 3 cut(s) 54, 875, 2489
MbiI CCGCTC 2 cut(s) 601, 1899
MboI GATC 3 cut(s) 52, 873, 2487
MfeI CAATTG 1 cut(s) 137
MhlI GDGCHC 4 cut(s) 28, 2340, 2737, 2795
MlyI GAGTC 3 cut(s) 1570, 2253, 2483
MmeI TCCRAC 3 cut(s) 60, 897, 1399
Mph1103I ATGCAT 2 cut(s) 1635, 1682
MroXI GAANNNNTTC 1 cut(s) 1956
MslI CAYNNNNRTG 4 cut(s) 122, 165, 2115, 2756
MspA1I CMGCKG 1 cut(s) 1854
MspI CCGG 3 cut(s) 450, 1914, 2009
MspR9I CCNGG 1 cut(s) 239
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 2 cut(s) 196, 1682
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 2 cut(s) 1078, 1854
MwoI GCNNNNNNNGC 3 cut(s) 133, 239, 779
NcoI CCATGG 1 cut(s) 2461
NdeII GATC 3 cut(s) 52, 873, 2487
NlaIII CATG 7 cut(s) 445, 599, 1637, 1649, 1924, 2251, 2465
NlaIV GGNNCC 6 cut(s) 722, 1407, 2267, 2467, 2735, 2792
NmeAIII GCCGAG 2 cut(s) 283, 680
NmuCI GTSAC 4 cut(s) 271, 587, 1069, 1494
NsiI ATGCAT 2 cut(s) 1635, 1682
NspI RCATGY 1 cut(s) 1924
PaeI GCATGC 1 cut(s) 1924
PagI TCATGA 1 cut(s) 595
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 2892
PctI GAATGC 2 cut(s) 196, 1682
PdmI GAANNNNTTC 1 cut(s) 1956
PfeI GAWTC 4 cut(s) 1738, 1957, 2396, 2438
Pfl23II CGTACG 1 cut(s) 321
PkrI GCNGC 4 cut(s) 221, 547, 1267, 1853
PleI GAGTC 3 cut(s) 1569, 2252, 2482
PmaCI CACGTG 1 cut(s) 2061
PmlI CACGTG 1 cut(s) 2061
PpsI GAGTC 3 cut(s) 1569, 2252, 2482
Ppu21I YACGTR 1 cut(s) 2061
PshBI ATTAAT 1 cut(s) 1707
PsiI TTATAA 1 cut(s) 1034
Psp6I CCWGG 1 cut(s) 237
PspCI CACGTG 1 cut(s) 2061
PspEI GGTNACC 3 cut(s) 587, 1069, 2132
PspGI CCWGG 1 cut(s) 237
PspLI CGTACG 1 cut(s) 321
PspN4I GGNNCC 6 cut(s) 722, 1407, 2267, 2467, 2735, 2792
PspOMI GGGCCC 1 cut(s) 2733
PspPI GGNCC 6 cut(s) 1405, 1772, 2047, 2251, 2733, 2734
PstI CTGCAG 1 cut(s) 1414
RseI CAYNNNNRTG 4 cut(s) 122, 165, 2115, 2756
SacII CCGCGG 1 cut(s) 1855
SatI GCNGC 4 cut(s) 220, 546, 1266, 1852
Sau3AI GATC 3 cut(s) 52, 873, 2487
Sau96I GGNCC 6 cut(s) 1405, 1772, 2047, 2251, 2733, 2734
ScaI AGTACT 1 cut(s) 2184
SchI GAGTC 3 cut(s) 1570, 2253, 2483
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 4 cut(s) 28, 2340, 2737, 2795
SfaNI GCATC 4 cut(s) 244, 2002, 2119, 2287
SfcI CTRYAG 1 cut(s) 1410
Sfr303I CCGCGG 1 cut(s) 1855
SgrBI CCGCGG 1 cut(s) 1855
SinI GGWCC 3 cut(s) 1772, 2047, 2251
SmiMI CAYNNNNRTG 4 cut(s) 122, 165, 2115, 2756
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SphI GCATGC 1 cut(s) 1924
SsiI CCGC 8 cut(s) 173, 377, 601, 903, 1573, 1852, 1854, 1899
SspI AATATT 3 cut(s) 1443, 1550, 1615
SspMI CTAG 6 cut(s) 341, 504, 887, 977, 1565, 2186
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 2461
TaaI ACNGT 1 cut(s) 2322
TaiI ACGT 4 cut(s) 339, 436, 949, 2063
TaqI TCGA 3 cut(s) 51, 633, 1727
TatI WGTACW 5 cut(s) 244, 973, 1058, 2055, 2182
TauI GCSGC 1 cut(s) 1854
TfiI GAWTC 4 cut(s) 1738, 1957, 2396, 2438
TscAI CASTG 3 cut(s) 1288, 2325, 2814
TseFI GTSAC 4 cut(s) 271, 587, 1069, 1494
TseI GCWGC 3 cut(s) 219, 545, 1265
Tsp45I GTSAC 4 cut(s) 271, 587, 1069, 1494
TspGWI ACGGA 1 cut(s) 1007
TspRI CASTG 3 cut(s) 1288, 2325, 2814
VpaK11BI GGWCC 3 cut(s) 1772, 2047, 2251
VspI ATTAAT 1 cut(s) 1707
XagI CCTNNNNNAGG 1 cut(s) 738
XapI RAATTY 9 cut(s) 921, 1015, 1891, 1993, 2431, 2534, 2580, 2627, 2673
XbaI TCTAGA 1 cut(s) 886
XceI RCATGY 1 cut(s) 1924
XcmI CCANNNNNNNNNTGG 1 cut(s) 2372
XmnI GAANNNNTTC 1 cut(s) 1956
XspI CTAG 6 cut(s) 341, 504, 887, 977, 1565, 2186
ZrmI AGTACT 1 cut(s) 2184
Zsp2I ATGCAT 2 cut(s) 1635, 1682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.