disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 6 - 96 | 8.2e-23 | Rx N-terminal domain |
| NB-ARC | PF00931 | 187 - 352 | 1.8e-34 | NB-ARC domain |
| WHD_DRP | PF23559 | 441 - 511 | 5.4e-20 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 563 - 852 | 2e-23 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 701 - 819 | 1.3e-27 | R13L1/DRL21 LRRs |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1683, 2322 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 686, 2557 |
| Acc36I | ACCTGC | 1 cut(s) | 1929 |
| Acc65I | GGTACC | 1 cut(s) | 779 |
| AccB1I | GGYRCC | 2 cut(s) | 779, 2330 |
| AccII | CGCG | 1 cut(s) | 69 |
| AciI | CCGC | 3 cut(s) | 1450, 1795, 2285 |
| AclI | AACGTT | 1 cut(s) | 1297 |
| AclWI | GGATC | 3 cut(s) | 257, 997, 2680 |
| AcoI | YGGCCR | 1 cut(s) | 364 |
| AcsI | RAATTY | 3 cut(s) | 1509, 1723, 1818 |
| AcuI | CTGAAG | 1 cut(s) | 95 |
| AcyI | GRCGYC | 2 cut(s) | 2331, 2429 |
| AfaI | GTAC | 6 cut(s) | 144, 781, 1340, 1524, 1696, 1755 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 58, 629, 1012, 2417 |
| AhlI | ACTAGT | 1 cut(s) | 13 |
| AjiI | CACGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 2 cut(s) | 1902, 2214 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1713, 1745 |
| Alw26I | GTCTC | 4 cut(s) | 730, 1820, 2473, 2594 |
| AlwI | GGATC | 3 cut(s) | 257, 997, 2680 |
| Ama87I | CYCGRG | 1 cut(s) | 1823 |
| AoxI | GGCC | 3 cut(s) | 364, 1732, 2679 |
| ApeKI | GCWGC | 5 cut(s) | 401, 1142, 1908, 2183, 2186 |
| ApoI | RAATTY | 3 cut(s) | 1509, 1723, 1818 |
| AseI | ATTAAT | 2 cut(s) | 905, 2021 |
| Asp718I | GGTACC | 1 cut(s) | 779 |
| AspLEI | GCGC | 2 cut(s) | 1901, 2333 |
| AspS9I | GGNCC | 5 cut(s) | 484, 730, 1733, 2559, 2679 |
| AsuHPI | GGTGA | 9 cut(s) | 94, 106, 961, 1034, 1664, 2096, 2201, 2209, 2681 |
| AvaI | CYCGRG | 1 cut(s) | 1823 |
| AvaII | GGWCC | 3 cut(s) | 484, 730, 2559 |
| BanI | GGYRCC | 2 cut(s) | 779, 2330 |
| BanII | GRGCYC | 1 cut(s) | 881 |
| BbvI | GCAGC | 5 cut(s) | 388, 1129, 1920, 2195, 2198 |
| BccI | CCATC | 6 cut(s) | 166, 628, 1696, 2057, 2075, 2498 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 383, 417 |
| BciT130I | CCWGG | 2 cut(s) | 1904, 2216 |
| BcoDI | GTCTC | 4 cut(s) | 730, 1820, 2473, 2594 |
| BcuI | ACTAGT | 1 cut(s) | 13 |
| BfaI | CTAG | 8 cut(s) | 14, 255, 480, 776, 957, 1587, 2060, 2228 |
| BfmI | CTRYAG | 2 cut(s) | 1707, 2609 |
| BfoI | RGCGCY | 2 cut(s) | 1902, 2334 |
| BfuAI | ACCTGC | 1 cut(s) | 1929 |
| BglII | AGATCT | 2 cut(s) | 2047, 2107 |
| BisI | GCNGC | 6 cut(s) | 402, 1143, 1909, 2184, 2187, 2285 |
| BlpI | GCTNAGC | 1 cut(s) | 2375 |
| BlsI | GCNGC | 6 cut(s) | 403, 1144, 1910, 2185, 2188, 2286 |
| Bme1390I | CCNGG | 2 cut(s) | 1904, 2216 |
| Bme18I | GGWCC | 3 cut(s) | 484, 730, 2559 |
| BmeT110I | CYCGRG | 1 cut(s) | 1823 |
| BmgBI | CACGTC | 1 cut(s) | 235 |
| BmgT120I | GGNCC | 5 cut(s) | 484, 730, 1733, 2559, 2679 |
| BmiI | GGNNCC | 8 cut(s) | 485, 486, 609, 732, 781, 878, 2332, 2560 |
| BmrFI | CCNGG | 2 cut(s) | 1904, 2216 |
| BmsI | GCATC | 5 cut(s) | 277, 804, 1573, 2002, 2296 |
| BpmI | CTGGAG | 2 cut(s) | 167, 1269 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2375 |
| BpuEI | CTTGAG | 3 cut(s) | 2008, 2386, 2402 |
| BsaAI | YACGTR | 2 cut(s) | 920, 1694 |
| BsaHI | GRCGYC | 2 cut(s) | 2331, 2429 |
| BsaJI | CCNNGG | 4 cut(s) | 1647, 1902, 1903, 2461 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1789, 1819 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 58, 629, 1012, 2417 |
| Bse1I | ACTGG | 2 cut(s) | 150, 2430 |
| Bse3DI | GCAATG | 4 cut(s) | 824, 1132, 1452, 2441 |
| BseBI | CCWGG | 2 cut(s) | 1904, 2216 |
| BseDI | CCNNGG | 4 cut(s) | 1647, 1902, 1903, 2461 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 58, 629, 1012, 2417 |
| BseMI | GCAATG | 4 cut(s) | 824, 1132, 1452, 2441 |
| BseMII | CTCAG | 1 cut(s) | 2389 |
| BseNI | ACTGG | 2 cut(s) | 150, 2430 |
| BseRI | GAGGAG | 3 cut(s) | 980, 2506, 2509 |
| BseXI | GCAGC | 5 cut(s) | 388, 1129, 1920, 2195, 2198 |
| BseYI | CCCAGC | 2 cut(s) | 1895, 1947 |
| Bsh1236I | CGCG | 1 cut(s) | 69 |
| BshFI | GGCC | 3 cut(s) | 366, 1734, 2681 |
| BshNI | GGYRCC | 2 cut(s) | 779, 2330 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1823 |
| BsiSI | CCGG | 1 cut(s) | 2585 |
| BsiWI | CGTACG | 1 cut(s) | 1694 |
| BslFI | GGGAC | 3 cut(s) | 470, 1965, 2416 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 58, 629, 1012, 2417 |
| BsmAI | GTCTC | 4 cut(s) | 730, 1820, 2473, 2594 |
| BsmBI | CGTCTC | 1 cut(s) | 1820 |
| BsmFI | GGGAC | 3 cut(s) | 470, 1965, 2416 |
| BsmI | GAATGC | 2 cut(s) | 2185, 2376 |
| BsnI | GGCC | 3 cut(s) | 366, 1734, 2681 |
| BsoBI | CYCGRG | 1 cut(s) | 1823 |
| Bsp1286I | GDGCHC | 1 cut(s) | 881 |
| Bsp1407I | TGTACA | 2 cut(s) | 1338, 1522 |
| Bsp143I | GATC | 5 cut(s) | 249, 1002, 2047, 2107, 2685 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2375 |
| Bsp19I | CCATGG | 1 cut(s) | 2461 |
| BspACI | CCGC | 3 cut(s) | 1450, 1795, 2285 |
| BspANI | GGCC | 3 cut(s) | 366, 1734, 2681 |
| BspCNI | CTCAG | 1 cut(s) | 2388 |
| BspFNI | CGCG | 1 cut(s) | 69 |
| BspHI | TCATGA | 3 cut(s) | 1186, 1273, 1513 |
| BspLI | GGNNCC | 8 cut(s) | 485, 486, 609, 732, 781, 878, 2332, 2560 |
| BspMI | ACCTGC | 1 cut(s) | 1929 |
| BspPI | GGATC | 3 cut(s) | 257, 997, 2680 |
| BspT107I | GGYRCC | 2 cut(s) | 779, 2330 |
| BsrDI | GCAATG | 4 cut(s) | 824, 1132, 1452, 2441 |
| BsrGI | TGTACA | 2 cut(s) | 1338, 1522 |
| BsrI | ACTGG | 2 cut(s) | 150, 2430 |
| BssECI | CCNNGG | 4 cut(s) | 1647, 1902, 1903, 2461 |
| BssMI | GATC | 5 cut(s) | 249, 1002, 2047, 2107, 2685 |
| BssNI | GRCGYC | 2 cut(s) | 2331, 2429 |
| BssT1I | CCWWGG | 1 cut(s) | 2461 |
| Bst2UI | CCWGG | 2 cut(s) | 1904, 2216 |
| Bst4CI | ACNGT | 2 cut(s) | 885, 2695 |
| Bst6I | CTCTTC | 1 cut(s) | 525 |
| BstACI | GRCGYC | 2 cut(s) | 2331, 2429 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1930, 2452 |
| BstAUI | TGTACA | 2 cut(s) | 1338, 1522 |
| BstBAI | YACGTR | 2 cut(s) | 920, 1694 |
| BstC8I | GCNNGC | 7 cut(s) | 48, 71, 181, 1197, 1641, 2008, 2389 |
| BstDEI | CTNAG | 8 cut(s) | 318, 862, 1265, 1441, 1633, 1769, 2278, 2375 |
| BstDSI | CCRYGG | 1 cut(s) | 2461 |
| BstEII | GGTNACC | 1 cut(s) | 949 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 56, 627, 2415 |
| BstFNI | CGCG | 1 cut(s) | 69 |
| BstH2I | RGCGCY | 2 cut(s) | 1902, 2334 |
| BstHHI | GCGC | 2 cut(s) | 1901, 2333 |
| BstKTI | GATC | 5 cut(s) | 252, 1005, 2050, 2110, 2688 |
| BstMAI | GTCTC | 4 cut(s) | 730, 1820, 2473, 2594 |
| BstMBI | GATC | 5 cut(s) | 249, 1002, 2047, 2107, 2685 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 47, 137, 202, 1905, 1930, 2452 |
| BstNI | CCWGG | 2 cut(s) | 1904, 2216 |
| BstNSI | RCATGY | 2 cut(s) | 1506, 1643 |
| BstPI | GGTNACC | 1 cut(s) | 949 |
| BstSCI | CCNGG | 2 cut(s) | 1902, 2214 |
| BstSFI | CTRYAG | 2 cut(s) | 1707, 2609 |
| BstSNI | TACGTA | 2 cut(s) | 920, 1694 |
| BstUI | CGCG | 1 cut(s) | 69 |
| BstV1I | GCAGC | 5 cut(s) | 388, 1129, 1920, 2195, 2198 |
| BstX2I | RGATCY | 3 cut(s) | 2047, 2107, 2685 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1903 |
| BstYI | RGATCY | 3 cut(s) | 2047, 2107, 2685 |
| BsuRI | GGCC | 3 cut(s) | 366, 1734, 2681 |
| BtgI | CCRYGG | 1 cut(s) | 2461 |
| BtrI | CACGTC | 1 cut(s) | 235 |
| BtsI | GCAGTG | 1 cut(s) | 2579 |
| BtsIMutI | CAGTG | 1 cut(s) | 2579 |
| BveI | ACCTGC | 1 cut(s) | 1929 |
| Cac8I | GCNNGC | 7 cut(s) | 48, 71, 181, 1197, 1641, 2008, 2389 |
| CciI | TCATGA | 3 cut(s) | 1186, 1273, 1513 |
| CfoI | GCGC | 2 cut(s) | 1901, 2333 |
| Cfr13I | GGNCC | 5 cut(s) | 484, 730, 1733, 2559, 2679 |
| CseI | GACGC | 2 cut(s) | 161, 2418 |
| Csp6I | GTAC | 6 cut(s) | 143, 780, 1339, 1523, 1695, 1754 |
| CviQI | GTAC | 6 cut(s) | 143, 780, 1339, 1523, 1695, 1754 |
| DdeI | CTNAG | 8 cut(s) | 318, 862, 1265, 1441, 1633, 1769, 2278, 2375 |
| DinI | GGCGCC | 1 cut(s) | 2332 |
| DpnI | GATC | 5 cut(s) | 251, 1004, 2049, 2109, 2687 |
| DpnII | GATC | 5 cut(s) | 249, 1002, 2047, 2107, 2685 |
| DraI | TTTAAA | 3 cut(s) | 1093, 1206, 1386 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 686, 2557 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 686, 2557 |
| EaeI | YGGCCR | 1 cut(s) | 364 |
| Eam1104I | CTCTTC | 1 cut(s) | 525 |
| EarI | CTCTTC | 1 cut(s) | 525 |
| EciI | GGCGGA | 1 cut(s) | 1810 |
| Eco105I | TACGTA | 2 cut(s) | 920, 1694 |
| Eco130I | CCWWGG | 1 cut(s) | 2461 |
| Eco24I | GRGCYC | 1 cut(s) | 881 |
| Eco47I | GGWCC | 3 cut(s) | 484, 730, 2559 |
| Eco57I | CTGAAG | 1 cut(s) | 95 |
| Eco88I | CYCGRG | 1 cut(s) | 1823 |
| Eco91I | GGTNACC | 1 cut(s) | 949 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 56, 627, 2415 |
| EcoO109I | RGGNCCY | 2 cut(s) | 484, 2559 |
| EcoO65I | GGTNACC | 1 cut(s) | 949 |
| EcoRII | CCWGG | 2 cut(s) | 1902, 2214 |
| EcoT14I | CCWWGG | 1 cut(s) | 2461 |
| EcoT22I | ATGCAT | 1 cut(s) | 270 |
| EcoT38I | GRGCYC | 1 cut(s) | 881 |
| EgeI | GGCGCC | 1 cut(s) | 2332 |
| EheI | GGCGCC | 1 cut(s) | 2332 |
| ErhI | CCWWGG | 1 cut(s) | 2461 |
| Esp3I | CGTCTC | 1 cut(s) | 1820 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 317, 349, 2124, 2156 |
| FaqI | GGGAC | 3 cut(s) | 470, 1965, 2416 |
| Fnu4HI | GCNGC | 6 cut(s) | 402, 1143, 1909, 2184, 2187, 2285 |
| FriOI | GRGCYC | 1 cut(s) | 881 |
| Fsp4HI | GCNGC | 6 cut(s) | 402, 1143, 1909, 2184, 2187, 2285 |
| FspBI | CTAG | 8 cut(s) | 14, 255, 480, 776, 957, 1587, 2060, 2228 |
| GlaI | GCGC | 2 cut(s) | 1900, 2332 |
| GluI | GCNGC | 6 cut(s) | 402, 1143, 1909, 2184, 2187, 2285 |
| GsaI | CCCAGC | 2 cut(s) | 1899, 1951 |
| GsuI | CTGGAG | 2 cut(s) | 167, 1269 |
| HaeII | RGCGCY | 2 cut(s) | 1902, 2334 |
| HaeIII | GGCC | 3 cut(s) | 366, 1734, 2681 |
| HapII | CCGG | 1 cut(s) | 2585 |
| HgaI | GACGC | 2 cut(s) | 161, 2418 |
| HhaI | GCGC | 2 cut(s) | 1901, 2333 |
| Hin1I | GRCGYC | 2 cut(s) | 2331, 2429 |
| Hin6I | GCGC | 2 cut(s) | 1899, 2331 |
| HinP1I | GCGC | 2 cut(s) | 1899, 2331 |
| HincII | GTYRAC | 1 cut(s) | 19 |
| HindII | GTYRAC | 1 cut(s) | 19 |
| HindIII | AAGCTT | 1 cut(s) | 1780 |
| HpaII | CCGG | 1 cut(s) | 2585 |
| HphI | GGTGA | 9 cut(s) | 94, 106, 961, 1034, 1664, 2096, 2201, 2209, 2681 |
| Hpy166II | GTNNAC | 2 cut(s) | 19, 1339 |
| Hpy188I | TCNGA | 8 cut(s) | 220, 730, 829, 1720, 1812, 1870, 2078, 2112 |
| Hpy8I | GTNNAC | 2 cut(s) | 19, 1339 |
| Hpy99I | CGWCG | 3 cut(s) | 224, 390, 2699 |
| HpyCH4III | ACNGT | 2 cut(s) | 885, 2695 |
| HpyCH4IV | ACGT | 6 cut(s) | 21, 234, 919, 1297, 1693, 1697 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 47, 137, 202, 1905, 1930, 2452 |
| HpyF3I | CTNAG | 8 cut(s) | 318, 862, 1265, 1441, 1633, 1769, 2278, 2375 |
| HpySE526I | ACGT | 6 cut(s) | 21, 234, 919, 1297, 1693, 1697 |
| Hsp92I | GRCGYC | 2 cut(s) | 2331, 2429 |
| HspAI | GCGC | 2 cut(s) | 1899, 2331 |
| KasI | GGCGCC | 1 cut(s) | 2330 |
| KflI | GGGWCCC | 1 cut(s) | 484 |
| KpnI | GGTACC | 1 cut(s) | 783 |
| Kzo9I | GATC | 5 cut(s) | 249, 1002, 2047, 2107, 2685 |
| LmnI | GCTCC | 1 cut(s) | 876 |
| Lsp1109I | GCAGC | 5 cut(s) | 388, 1129, 1920, 2195, 2198 |
| LweI | GCATC | 5 cut(s) | 277, 804, 1573, 2002, 2296 |
| MaeI | CTAG | 8 cut(s) | 14, 255, 480, 776, 957, 1587, 2060, 2228 |
| MaeII | ACGT | 6 cut(s) | 21, 234, 919, 1297, 1693, 1697 |
| MaeIII | GTNAC | 4 cut(s) | 389, 949, 973, 1315 |
| MalI | GATC | 5 cut(s) | 251, 1004, 2049, 2109, 2687 |
| MboI | GATC | 5 cut(s) | 249, 1002, 2047, 2107, 2685 |
| MboII | GAAGA | 8 cut(s) | 334, 418, 512, 752, 845, 911, 2117, 2639 |
| MfeI | CAATTG | 5 cut(s) | 272, 998, 1757, 2546, 2553 |
| MflI | RGATCY | 3 cut(s) | 2047, 2107, 2685 |
| MhlI | GDGCHC | 1 cut(s) | 881 |
| Mly113I | GGCGCC | 1 cut(s) | 2331 |
| MlyI | GAGTC | 4 cut(s) | 1276, 1947, 2146, 2475 |
| MmeI | TCCRAC | 5 cut(s) | 243, 1560, 1863, 2056, 2082 |
| Mph1103I | ATGCAT | 1 cut(s) | 270 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1998 |
| MspI | CCGG | 1 cut(s) | 2585 |
| MspR9I | CCNGG | 2 cut(s) | 1904, 2216 |
| MunI | CAATTG | 5 cut(s) | 272, 998, 1757, 2546, 2553 |
| Mva1269I | GAATGC | 2 cut(s) | 2185, 2376 |
| MvaI | CCWGG | 2 cut(s) | 1904, 2216 |
| MvnI | CGCG | 1 cut(s) | 69 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 47, 137, 202, 1905, 1930, 2452 |
| NarI | GGCGCC | 1 cut(s) | 2331 |
| NcoI | CCATGG | 1 cut(s) | 2461 |
| NdeII | GATC | 5 cut(s) | 249, 1002, 2047, 2107, 2685 |
| NlaIV | GGNNCC | 8 cut(s) | 485, 486, 609, 732, 781, 878, 2332, 2560 |
| NmeAIII | GCCGAG | 1 cut(s) | 2219 |
| NmuCI | GTSAC | 2 cut(s) | 389, 949 |
| NsiI | ATGCAT | 1 cut(s) | 270 |
| NspI | RCATGY | 2 cut(s) | 1506, 1643 |
| PacI | TTAATTAA | 1 cut(s) | 909 |
| PaeI | GCATGC | 1 cut(s) | 1643 |
| PagI | TCATGA | 3 cut(s) | 1186, 1273, 1513 |
| PasI | CCCWGGG | 1 cut(s) | 1903 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1866 |
| PctI | GAATGC | 2 cut(s) | 2185, 2376 |
| PfeI | GAWTC | 8 cut(s) | 791, 1183, 1234, 1655, 1712, 2300, 2438, 2630 |
| Pfl23II | CGTACG | 1 cut(s) | 1694 |
| PflFI | GACNNNGTC | 1 cut(s) | 59 |
| PfoI | TCCNGGA | 1 cut(s) | 2214 |
| PkrI | GCNGC | 6 cut(s) | 403, 1144, 1910, 2185, 2188, 2286 |
| PleI | GAGTC | 4 cut(s) | 1276, 1947, 2145, 2474 |
| PluTI | GGCGCC | 1 cut(s) | 2334 |
| PpsI | GAGTC | 4 cut(s) | 1276, 1947, 2145, 2474 |
| Ppu21I | YACGTR | 2 cut(s) | 920, 1694 |
| PpuMI | RGGWCCY | 2 cut(s) | 484, 2559 |
| PshBI | ATTAAT | 2 cut(s) | 905, 2021 |
| PsiI | TTATAA | 2 cut(s) | 1683, 2322 |
| Psp1406I | AACGTT | 1 cut(s) | 1297 |
| Psp5II | RGGWCCY | 2 cut(s) | 484, 2559 |
| Psp6I | CCWGG | 2 cut(s) | 1902, 2214 |
| PspEI | GGTNACC | 1 cut(s) | 949 |
| PspFI | CCCAGC | 2 cut(s) | 1895, 1947 |
| PspGI | CCWGG | 2 cut(s) | 1902, 2214 |
| PspLI | CGTACG | 1 cut(s) | 1694 |
| PspN4I | GGNNCC | 8 cut(s) | 485, 486, 609, 732, 781, 878, 2332, 2560 |
| PspPI | GGNCC | 5 cut(s) | 484, 730, 1733, 2559, 2679 |
| PspPPI | RGGWCCY | 2 cut(s) | 484, 2559 |
| PsuI | RGATCY | 3 cut(s) | 2047, 2107, 2685 |
| PsyI | GACNNNGTC | 1 cut(s) | 59 |
| RsaI | GTAC | 6 cut(s) | 144, 781, 1340, 1524, 1696, 1755 |
| RsaNI | GTAC | 6 cut(s) | 143, 780, 1339, 1523, 1695, 1754 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1998 |
| SatI | GCNGC | 6 cut(s) | 402, 1143, 1909, 2184, 2187, 2285 |
| Sau3AI | GATC | 5 cut(s) | 249, 1002, 2047, 2107, 2685 |
| Sau96I | GGNCC | 5 cut(s) | 484, 730, 1733, 2559, 2679 |
| SchI | GAGTC | 4 cut(s) | 1276, 1947, 2146, 2475 |
| ScrFI | CCNGG | 2 cut(s) | 1904, 2216 |
| SduI | GDGCHC | 1 cut(s) | 881 |
| SfaNI | GCATC | 5 cut(s) | 277, 804, 1573, 2002, 2296 |
| SfcI | CTRYAG | 2 cut(s) | 1707, 2609 |
| SfoI | GGCGCC | 1 cut(s) | 2332 |
| SinI | GGWCC | 3 cut(s) | 484, 730, 2559 |
| SmiI | ATTTAAAT | 1 cut(s) | 1386 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1998 |
| SmlI | CTYRAG | 3 cut(s) | 1987, 2365, 2381 |
| SmoI | CTYRAG | 3 cut(s) | 1987, 2365, 2381 |
| SnaBI | TACGTA | 2 cut(s) | 920, 1694 |
| SpeI | ACTAGT | 1 cut(s) | 13 |
| SphI | GCATGC | 1 cut(s) | 1643 |
| SsiI | CCGC | 3 cut(s) | 1450, 1795, 2285 |
| SspDI | GGCGCC | 1 cut(s) | 2330 |
| SspI | AATATT | 2 cut(s) | 1099, 1541 |
| SspMI | CTAG | 8 cut(s) | 14, 255, 480, 776, 957, 1587, 2060, 2228 |
| StyD4I | CCNGG | 2 cut(s) | 1902, 2214 |
| StyI | CCWWGG | 1 cut(s) | 2461 |
| SwaI | ATTTAAAT | 1 cut(s) | 1386 |
| TaaI | ACNGT | 2 cut(s) | 885, 2695 |
| TaiI | ACGT | 6 cut(s) | 24, 237, 922, 1300, 1696, 1700 |
| TaqI | TCGA | 6 cut(s) | 63, 136, 544, 1252, 1860, 2625 |
| TatI | WGTACW | 4 cut(s) | 142, 1338, 1522, 1753 |
| TauI | GCSGC | 1 cut(s) | 2287 |
| TfiI | GAWTC | 8 cut(s) | 791, 1183, 1234, 1655, 1712, 2300, 2438, 2630 |
| TscAI | CASTG | 1 cut(s) | 2586 |
| TseFI | GTSAC | 2 cut(s) | 389, 949 |
| TseI | GCWGC | 5 cut(s) | 401, 1142, 1908, 2183, 2186 |
| Tsp45I | GTSAC | 2 cut(s) | 389, 949 |
| TspGWI | ACGGA | 2 cut(s) | 2189, 2408 |
| TspRI | CASTG | 1 cut(s) | 2586 |
| Tth111I | GACNNNGTC | 1 cut(s) | 59 |
| VpaK11BI | GGWCC | 3 cut(s) | 484, 730, 2559 |
| VspI | ATTAAT | 2 cut(s) | 905, 2021 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 56, 627, 2415 |
| XapI | RAATTY | 3 cut(s) | 1509, 1723, 1818 |
| XceI | RCATGY | 2 cut(s) | 1506, 1643 |
| XspI | CTAG | 8 cut(s) | 14, 255, 480, 776, 957, 1587, 2060, 2228 |
| Zsp2I | ATGCAT | 1 cut(s) | 270 |