Inner membrane component of T3SS, cytoplasmic domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 357 |
| AarI | CACCTGC | 1 cut(s) | 169 |
| AbsI | CCTCGAGG | 1 cut(s) | 1039 |
| Acc36I | ACCTGC | 1 cut(s) | 169 |
| AccB1I | GGYRCC | 3 cut(s) | 181, 281, 1106 |
| AciI | CCGC | 1 cut(s) | 1236 |
| AclWI | GGATC | 3 cut(s) | 653, 734, 1319 |
| AcoI | YGGCCR | 1 cut(s) | 373 |
| AcuI | CTGAAG | 1 cut(s) | 650 |
| AcvI | CACGTG | 1 cut(s) | 818 |
| AfaI | GTAC | 7 cut(s) | 51, 162, 405, 424, 866, 1032, 1153 |
| AfeI | AGCGCT | 1 cut(s) | 148 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 110, 191, 278, 471, 1041, 1430 |
| AflIII | ACRYGT | 2 cut(s) | 817, 961 |
| AgsI | TTSAA | 3 cut(s) | 675, 987, 1430 |
| AjnI | CCWGG | 2 cut(s) | 914, 940 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1278, 1310 |
| AleI | CACNNNNGTG | 1 cut(s) | 1095 |
| AluBI | AGCT | 2 cut(s) | 542, 695 |
| AluI | AGCT | 2 cut(s) | 542, 695 |
| Alw21I | GWGCWC | 1 cut(s) | 711 |
| Alw26I | GTCTC | 1 cut(s) | 269 |
| AlwI | GGATC | 3 cut(s) | 653, 734, 1319 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1424 |
| Ama87I | CYCGRG | 1 cut(s) | 1039 |
| Aor51HI | AGCGCT | 1 cut(s) | 148 |
| AoxI | GGCC | 1 cut(s) | 373 |
| ApeKI | GCWGC | 4 cut(s) | 1064, 1085, 1229, 1232 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 235, 316, 1383, 1425 |
| AspLEI | GCGC | 3 cut(s) | 149, 876, 1123 |
| AspS9I | GGNCC | 1 cut(s) | 1265 |
| AsuHPI | GGTGA | 7 cut(s) | 578, 614, 749, 821, 1042, 1109, 1334 |
| AvaI | CYCGRG | 1 cut(s) | 1039 |
| AvaII | GGWCC | 1 cut(s) | 1265 |
| BaeGI | GKGCMC | 1 cut(s) | 286 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1326, 1359 |
| BalI | TGGCCA | 1 cut(s) | 375 |
| BanI | GGYRCC | 3 cut(s) | 181, 281, 1106 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 648, 680 |
| BbrPI | CACGTG | 1 cut(s) | 818 |
| Bbv12I | GWGCWC | 1 cut(s) | 711 |
| BbvI | GCAGC | 4 cut(s) | 1076, 1097, 1216, 1219 |
| BccI | CCATC | 7 cut(s) | 160, 182, 344, 728, 854, 864, 1396 |
| BceAI | ACGGC | 1 cut(s) | 1119 |
| BciT130I | CCWGG | 2 cut(s) | 916, 942 |
| BclI | TGATCA | 2 cut(s) | 508, 1021 |
| BcoDI | GTCTC | 1 cut(s) | 269 |
| BfaI | CTAG | 4 cut(s) | 11, 324, 729, 1140 |
| BfmI | CTRYAG | 4 cut(s) | 415, 925, 1062, 1361 |
| BfoI | RGCGCY | 1 cut(s) | 150 |
| BfuAI | ACCTGC | 1 cut(s) | 169 |
| BisI | GCNGC | 5 cut(s) | 1065, 1086, 1230, 1233, 1236 |
| BlsI | GCNGC | 5 cut(s) | 1066, 1087, 1231, 1234, 1237 |
| Bme1390I | CCNGG | 2 cut(s) | 916, 942 |
| Bme18I | GGWCC | 1 cut(s) | 1265 |
| BmeT110I | CYCGRG | 1 cut(s) | 1039 |
| BmgT120I | GGNCC | 1 cut(s) | 1265 |
| BmiI | GGNNCC | 4 cut(s) | 183, 283, 1108, 1266 |
| BmrFI | CCNGG | 2 cut(s) | 916, 942 |
| BmsI | GCATC | 5 cut(s) | 47, 920, 935, 1076, 1216 |
| BpmI | CTGGAG | 1 cut(s) | 382 |
| BsaAI | YACGTR | 1 cut(s) | 818 |
| BsaBI | GATNNNNATC | 2 cut(s) | 738, 1257 |
| BsaJI | CCNNGG | 1 cut(s) | 914 |
| BsaWI | WCCGGW | 1 cut(s) | 790 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 110, 191, 278, 471, 1041, 1430 |
| Bse1I | ACTGG | 5 cut(s) | 283, 365, 597, 653, 811 |
| Bse3DI | GCAATG | 3 cut(s) | 173, 203, 260 |
| Bse8I | GATNNNNATC | 2 cut(s) | 738, 1257 |
| BseBI | CCWGG | 2 cut(s) | 916, 942 |
| BseDI | CCNNGG | 1 cut(s) | 914 |
| BseGI | GGATG | 5 cut(s) | 34, 355, 427, 511, 950 |
| BseJI | GATNNNNATC | 2 cut(s) | 738, 1257 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 110, 191, 278, 471, 1041, 1430 |
| BseMI | GCAATG | 3 cut(s) | 173, 203, 260 |
| BseMII | CTCAG | 3 cut(s) | 243, 264, 639 |
| BseNI | ACTGG | 5 cut(s) | 283, 365, 597, 653, 811 |
| BseSI | GKGCMC | 1 cut(s) | 286 |
| BseXI | GCAGC | 4 cut(s) | 1076, 1097, 1216, 1219 |
| BsgI | GTGCAG | 1 cut(s) | 719 |
| BshFI | GGCC | 1 cut(s) | 375 |
| BshNI | GGYRCC | 3 cut(s) | 181, 281, 1106 |
| BsiHKAI | GWGCWC | 1 cut(s) | 711 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1039 |
| BsiSI | CCGG | 1 cut(s) | 791 |
| BslFI | GGGAC | 1 cut(s) | 518 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 110, 191, 278, 471, 1041, 1430 |
| BsmAI | GTCTC | 1 cut(s) | 269 |
| BsmFI | GGGAC | 1 cut(s) | 518 |
| BsmI | GAATGC | 1 cut(s) | 670 |
| BsnI | GGCC | 1 cut(s) | 375 |
| BsoBI | CYCGRG | 1 cut(s) | 1039 |
| Bsp1286I | GDGCHC | 2 cut(s) | 286, 711 |
| Bsp1407I | TGTACA | 1 cut(s) | 422 |
| Bsp143I | GATC | 6 cut(s) | 508, 658, 739, 1021, 1258, 1324 |
| BspACI | CCGC | 1 cut(s) | 1236 |
| BspANI | GGCC | 1 cut(s) | 375 |
| BspCNI | CTCAG | 3 cut(s) | 244, 265, 640 |
| BspHI | TCATGA | 2 cut(s) | 304, 1024 |
| BspLI | GGNNCC | 4 cut(s) | 183, 283, 1108, 1266 |
| BspMAI | CTGCAG | 2 cut(s) | 1066, 1365 |
| BspMI | ACCTGC | 1 cut(s) | 169 |
| BspPI | GGATC | 3 cut(s) | 653, 734, 1319 |
| BspT107I | GGYRCC | 3 cut(s) | 181, 281, 1106 |
| BsrDI | GCAATG | 3 cut(s) | 173, 203, 260 |
| BsrGI | TGTACA | 1 cut(s) | 422 |
| BsrI | ACTGG | 5 cut(s) | 283, 365, 597, 653, 811 |
| BssECI | CCNNGG | 1 cut(s) | 914 |
| BssMI | GATC | 6 cut(s) | 508, 658, 739, 1021, 1258, 1324 |
| Bst2UI | CCWGG | 2 cut(s) | 916, 942 |
| Bst4CI | ACNGT | 4 cut(s) | 342, 490, 556, 1048 |
| Bst6I | CTCTTC | 1 cut(s) | 440 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 706 |
| BstAUI | TGTACA | 1 cut(s) | 422 |
| BstBAI | YACGTR | 1 cut(s) | 818 |
| BstC8I | GCNNGC | 2 cut(s) | 1083, 1125 |
| BstDEI | CTNAG | 4 cut(s) | 252, 273, 527, 648 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1428 |
| BstF5I | GGATG | 5 cut(s) | 34, 355, 427, 511, 950 |
| BstH2I | RGCGCY | 1 cut(s) | 150 |
| BstHHI | GCGC | 3 cut(s) | 149, 876, 1123 |
| BstKTI | GATC | 6 cut(s) | 511, 661, 742, 1024, 1261, 1327 |
| BstMAI | GTCTC | 1 cut(s) | 269 |
| BstMBI | GATC | 6 cut(s) | 508, 658, 739, 1021, 1258, 1324 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 706, 1145, 1235, 1402 |
| BstNI | CCWGG | 2 cut(s) | 916, 942 |
| BstNSI | RCATGY | 4 cut(s) | 965, 1127, 1152, 1308 |
| BstSCI | CCNGG | 2 cut(s) | 914, 940 |
| BstSFI | CTRYAG | 4 cut(s) | 415, 925, 1062, 1361 |
| BstSLI | GKGCMC | 1 cut(s) | 286 |
| BstV1I | GCAGC | 4 cut(s) | 1076, 1097, 1216, 1219 |
| BstX2I | RGATCY | 1 cut(s) | 658 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 793 |
| BstYI | RGATCY | 1 cut(s) | 658 |
| BsuRI | GGCC | 1 cut(s) | 375 |
| BtsCI | GGATG | 5 cut(s) | 34, 355, 427, 511, 950 |
| BtsIMutI | CAGTG | 2 cut(s) | 122, 604 |
| BveI | ACCTGC | 1 cut(s) | 169 |
| Cac8I | GCNNGC | 2 cut(s) | 1083, 1125 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1424 |
| CciI | TCATGA | 2 cut(s) | 304, 1024 |
| CfoI | GCGC | 3 cut(s) | 149, 876, 1123 |
| Cfr13I | GGNCC | 1 cut(s) | 1265 |
| Csp6I | GTAC | 7 cut(s) | 50, 161, 404, 423, 865, 1031, 1152 |
| CviQI | GTAC | 7 cut(s) | 50, 161, 404, 423, 865, 1031, 1152 |
| DdeI | CTNAG | 4 cut(s) | 252, 273, 527, 648 |
| DpnI | GATC | 6 cut(s) | 510, 660, 741, 1023, 1260, 1326 |
| DpnII | GATC | 6 cut(s) | 508, 658, 739, 1021, 1258, 1324 |
| EaeI | YGGCCR | 1 cut(s) | 373 |
| Eam1104I | CTCTTC | 1 cut(s) | 440 |
| EarI | CTCTTC | 1 cut(s) | 440 |
| Eco47I | GGWCC | 1 cut(s) | 1265 |
| Eco47III | AGCGCT | 1 cut(s) | 148 |
| Eco57I | CTGAAG | 1 cut(s) | 650 |
| Eco72I | CACGTG | 1 cut(s) | 818 |
| Eco88I | CYCGRG | 1 cut(s) | 1039 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1428 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1265 |
| EcoRII | CCWGG | 2 cut(s) | 914, 940 |
| FaqI | GGGAC | 1 cut(s) | 518 |
| FauNDI | CATATG | 1 cut(s) | 1006 |
| FbaI | TGATCA | 2 cut(s) | 508, 1021 |
| Fnu4HI | GCNGC | 5 cut(s) | 1065, 1086, 1230, 1233, 1236 |
| FokI | GGATG | 5 cut(s) | 41, 362, 414, 498, 957 |
| Fsp4HI | GCNGC | 5 cut(s) | 1065, 1086, 1230, 1233, 1236 |
| FspBI | CTAG | 4 cut(s) | 11, 324, 729, 1140 |
| GlaI | GCGC | 3 cut(s) | 148, 875, 1122 |
| GluI | GCNGC | 5 cut(s) | 1065, 1086, 1230, 1233, 1236 |
| GsuI | CTGGAG | 1 cut(s) | 382 |
| HaeII | RGCGCY | 1 cut(s) | 150 |
| HaeIII | GGCC | 1 cut(s) | 375 |
| HapII | CCGG | 1 cut(s) | 791 |
| HhaI | GCGC | 3 cut(s) | 149, 876, 1123 |
| Hin6I | GCGC | 3 cut(s) | 147, 874, 1121 |
| HinP1I | GCGC | 3 cut(s) | 147, 874, 1121 |
| HincII | GTYRAC | 1 cut(s) | 594 |
| HindII | GTYRAC | 1 cut(s) | 594 |
| HinfI | GANTC | 5 cut(s) | 910, 983, 1100, 1199, 1253 |
| HpaI | GTTAAC | 1 cut(s) | 594 |
| HpaII | CCGG | 1 cut(s) | 791 |
| HphI | GGTGA | 7 cut(s) | 578, 614, 749, 821, 1042, 1109, 1334 |
| Hpy166II | GTNNAC | 6 cut(s) | 122, 425, 493, 594, 812, 1175 |
| Hpy188I | TCNGA | 8 cut(s) | 43, 133, 253, 831, 909, 1258, 1378, 1393 |
| Hpy188III | TCNNGA | 7 cut(s) | 224, 305, 324, 743, 1025, 1215, 1268 |
| Hpy8I | GTNNAC | 6 cut(s) | 122, 425, 493, 594, 812, 1175 |
| HpyAV | CCTTC | 8 cut(s) | 52, 221, 250, 302, 674, 757, 1163, 1313 |
| HpyCH4III | ACNGT | 4 cut(s) | 342, 490, 556, 1048 |
| HpyCH4IV | ACGT | 1 cut(s) | 817 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 706, 1145, 1235, 1402 |
| HpyF3I | CTNAG | 4 cut(s) | 252, 273, 527, 648 |
| HpySE526I | ACGT | 1 cut(s) | 817 |
| HspAI | GCGC | 3 cut(s) | 147, 874, 1121 |
| Ksp22I | TGATCA | 2 cut(s) | 508, 1021 |
| KspAI | GTTAAC | 1 cut(s) | 594 |
| Kzo9I | GATC | 6 cut(s) | 508, 658, 739, 1021, 1258, 1324 |
| LmnI | GCTCC | 2 cut(s) | 154, 467 |
| Lsp1109I | GCAGC | 4 cut(s) | 1076, 1097, 1216, 1219 |
| LweI | GCATC | 5 cut(s) | 47, 920, 935, 1076, 1216 |
| MaeI | CTAG | 4 cut(s) | 11, 324, 729, 1140 |
| MaeII | ACGT | 1 cut(s) | 817 |
| MaeIII | GTNAC | 5 cut(s) | 22, 410, 920, 1048, 1097 |
| MalI | GATC | 6 cut(s) | 510, 660, 741, 1023, 1260, 1326 |
| MboI | GATC | 6 cut(s) | 508, 658, 739, 1021, 1258, 1324 |
| MboII | GAAGA | 8 cut(s) | 67, 457, 581, 617, 772, 1230, 1298, 1328 |
| MfeI | CAATTG | 2 cut(s) | 209, 1338 |
| MflI | RGATCY | 1 cut(s) | 658 |
| MhlI | GDGCHC | 2 cut(s) | 286, 711 |
| MlsI | TGGCCA | 1 cut(s) | 375 |
| MluCI | AATT | 5 cut(s) | 209, 890, 1221, 1289, 1338 |
| MluNI | TGGCCA | 1 cut(s) | 375 |
| MlyI | GAGTC | 2 cut(s) | 1094, 1208 |
| Mox20I | TGGCCA | 1 cut(s) | 375 |
| MroXI | GAANNNNTTC | 4 cut(s) | 235, 316, 1383, 1425 |
| MscI | TGGCCA | 1 cut(s) | 375 |
| MseI | TTAA | 6 cut(s) | 245, 479, 593, 954, 978, 1435 |
| MslI | CAYNNNNRTG | 4 cut(s) | 675, 791, 1023, 1095 |
| Msp20I | TGGCCA | 1 cut(s) | 375 |
| MspA1I | CMGCKG | 1 cut(s) | 1238 |
| MspI | CCGG | 1 cut(s) | 791 |
| MspR9I | CCNGG | 2 cut(s) | 916, 942 |
| MunI | CAATTG | 2 cut(s) | 209, 1338 |
| Mva1269I | GAATGC | 1 cut(s) | 670 |
| MvaI | CCWGG | 2 cut(s) | 916, 942 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 706, 1145, 1235, 1402 |
| NdeI | CATATG | 1 cut(s) | 1006 |
| NdeII | GATC | 6 cut(s) | 508, 658, 739, 1021, 1258, 1324 |
| NlaIV | GGNNCC | 4 cut(s) | 183, 283, 1108, 1266 |
| NmuCI | GTSAC | 2 cut(s) | 1048, 1097 |
| NspI | RCATGY | 4 cut(s) | 965, 1127, 1152, 1308 |
| OliI | CACNNNNGTG | 1 cut(s) | 1095 |
| PaeI | GCATGC | 1 cut(s) | 1127 |
| PaeR7I | CTCGAG | 1 cut(s) | 1039 |
| PagI | TCATGA | 2 cut(s) | 304, 1024 |
| PaqCI | CACCTGC | 1 cut(s) | 169 |
| PciI | ACATGT | 1 cut(s) | 961 |
| PctI | GAATGC | 1 cut(s) | 670 |
| PdmI | GAANNNNTTC | 4 cut(s) | 235, 316, 1383, 1425 |
| PfeI | GAWTC | 3 cut(s) | 910, 983, 1253 |
| PfoI | TCCNGGA | 1 cut(s) | 940 |
| PkrI | GCNGC | 5 cut(s) | 1066, 1087, 1231, 1234, 1237 |
| PleI | GAGTC | 2 cut(s) | 1094, 1207 |
| PmaCI | CACGTG | 1 cut(s) | 818 |
| PmlI | CACGTG | 1 cut(s) | 818 |
| PpsI | GAGTC | 2 cut(s) | 1094, 1207 |
| Ppu21I | YACGTR | 1 cut(s) | 818 |
| PpuMI | RGGWCCY | 1 cut(s) | 1265 |
| PscI | ACATGT | 1 cut(s) | 961 |
| PsiI | TTATAA | 1 cut(s) | 357 |
| Psp5II | RGGWCCY | 1 cut(s) | 1265 |
| Psp6I | CCWGG | 2 cut(s) | 914, 940 |
| PspCI | CACGTG | 1 cut(s) | 818 |
| PspGI | CCWGG | 2 cut(s) | 914, 940 |
| PspN4I | GGNNCC | 4 cut(s) | 183, 283, 1108, 1266 |
| PspPI | GGNCC | 1 cut(s) | 1265 |
| PspPPI | RGGWCCY | 1 cut(s) | 1265 |
| PspXI | VCTCGAGB | 1 cut(s) | 1039 |
| PstI | CTGCAG | 2 cut(s) | 1066, 1365 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1424 |
| PsuI | RGATCY | 1 cut(s) | 658 |
| RsaI | GTAC | 7 cut(s) | 51, 162, 405, 424, 866, 1032, 1153 |
| RsaNI | GTAC | 7 cut(s) | 50, 161, 404, 423, 865, 1031, 1152 |
| RseI | CAYNNNNRTG | 4 cut(s) | 675, 791, 1023, 1095 |
| SaqAI | TTAA | 6 cut(s) | 245, 479, 593, 954, 978, 1435 |
| SatI | GCNGC | 5 cut(s) | 1065, 1086, 1230, 1233, 1236 |
| Sau3AI | GATC | 6 cut(s) | 508, 658, 739, 1021, 1258, 1324 |
| Sau96I | GGNCC | 1 cut(s) | 1265 |
| SchI | GAGTC | 2 cut(s) | 1094, 1208 |
| ScrFI | CCNGG | 2 cut(s) | 916, 942 |
| SduI | GDGCHC | 2 cut(s) | 286, 711 |
| SfaNI | GCATC | 5 cut(s) | 47, 920, 935, 1076, 1216 |
| SfcI | CTRYAG | 4 cut(s) | 415, 925, 1062, 1361 |
| Sfr274I | CTCGAG | 1 cut(s) | 1039 |
| SinI | GGWCC | 1 cut(s) | 1265 |
| SlaI | CTCGAG | 1 cut(s) | 1039 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 675, 791, 1023, 1095 |
| SmlI | CTYRAG | 1 cut(s) | 1039 |
| SmoI | CTYRAG | 1 cut(s) | 1039 |
| SphI | GCATGC | 1 cut(s) | 1127 |
| Sse9I | AATT | 5 cut(s) | 209, 890, 1221, 1289, 1338 |
| SsiI | CCGC | 1 cut(s) | 1236 |
| SspI | AATATT | 2 cut(s) | 67, 397 |
| SspMI | CTAG | 4 cut(s) | 11, 324, 729, 1140 |
| StyD4I | CCNGG | 2 cut(s) | 914, 940 |
| TaaI | ACNGT | 4 cut(s) | 342, 490, 556, 1048 |
| TaiI | ACGT | 1 cut(s) | 820 |
| TaqI | TCGA | 3 cut(s) | 1040, 1182, 1251 |
| TasI | AATT | 5 cut(s) | 209, 890, 1221, 1289, 1338 |
| TatI | WGTACW | 1 cut(s) | 422 |
| TauI | GCSGC | 1 cut(s) | 1238 |
| TfiI | GAWTC | 3 cut(s) | 910, 983, 1253 |
| Tru1I | TTAA | 6 cut(s) | 245, 479, 593, 954, 978, 1435 |
| Tru9I | TTAA | 6 cut(s) | 245, 479, 593, 954, 978, 1435 |
| TscAI | CASTG | 2 cut(s) | 129, 604 |
| TseFI | GTSAC | 2 cut(s) | 1048, 1097 |
| TseI | GCWGC | 4 cut(s) | 1064, 1085, 1229, 1232 |
| Tsp45I | GTSAC | 2 cut(s) | 1048, 1097 |
| TspDTI | ATGAA | 7 cut(s) | 45, 309, 321, 705, 1182, 1299, 1329 |
| TspGWI | ACGGA | 2 cut(s) | 41, 550 |
| TspRI | CASTG | 2 cut(s) | 129, 604 |
| VpaK11BI | GGWCC | 1 cut(s) | 1265 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1428 |
| XbaI | TCTAGA | 1 cut(s) | 323 |
| XceI | RCATGY | 4 cut(s) | 965, 1127, 1152, 1308 |
| XhoI | CTCGAG | 1 cut(s) | 1039 |
| XmnI | GAANNNNTTC | 4 cut(s) | 235, 316, 1383, 1425 |
| XspI | CTAG | 4 cut(s) | 11, 324, 729, 1140 |