RchiOBHm_Chr4g0389051

disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
4209671 .. 4212538
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36222

Sequence Viewer

Length: 2868 bp
ATGGCTGCAGCACTGGTTAATGTTCTGCTAGCGCGTTTGGCTACGCTCTCCCTTGGCAAGATCCAACGAGAGCTGAATATGGTGGTCGGGGTTAAGCAAGAAGTCAAAAATCTCACCAAGAAACTCCAAGCTATTCAAGCTGTGCTGGAGGACGCAGAGCAGAGGCAAGAGATGGAAGCCAGCGTGAAACTTTGGCTCAATGAGCTAAATGATGTTTCCCACGACATGGATGACGTGCTCGATGAGTGGATCACTAGAGTTCTGATGCATCAAGTGGAGAAAGAAGAAAAACAAGGTACTAATTCTCTTGTTGCTACTAAGAAGAAGGTATGCTTCCCCTTTCCTTCCTCTTGCTTTCGCTTCAGCCAGGTCAATCAATTATTTCTTCGTCACGAAATTGCTTCGAAGATAAAAGAATTGAATGAAACATTAGCTCAGATTGATGAAAACAAACAAAGGTTTAACTTTCAAAACATCATTACAAGGGTTCCCGAACTACCTCAACGTCAAAAAACTACTTCTCTTCCCAATGCTAAAACATTTGGTCGAGATAATGAAAAAAACCTCATAATTAGCAAGCTGCTAAGTGAGAGTACTGAAGGACAAGAGGTTCCTCTTGTCATCCCTATTGTAGGGATGGGGGGCATAGGAAAAACATCTCTTGTCAACTTAGTCTATAATGATGAAAAGATCAAATCTCATTTTGACGAGAGAATATGGGTATGTGTCTCAGATCCTTTTGAAGAGATAAAAATCGCTAAAGCTATTGTTGAAGGTCTAGAACAAGATAATACCTCAAATGAGTTGGAAACTTTGATGAGAAGCATTAATCAATCGATTGAGGGTAAAAAGTTCCTCCTTGTTTTAGATGATGTGTGGAGCCCAAAGTTAAATCAATGGGAAGAATTAATTAAACCTCTATGTAACGGTGCTATGGGTAGTACAGTATTGGTGACCACTAGAAAAGAGGAAGTTGCTACTTTAATGAAAGCAACAACTCAATTGATCCCTCTGAAGGCGTTGGGTGAAGTATTTTGTTTGTCATTGTTCTATTACTACGCAGACATTAATGAGAGTAGTGTGTCTAAACAATTTTACGACATTGGGTTAGAGATTGTTAAAAGGTGCAATGGGTTGCCTCTAGCTGCAAAGGCGTTAGGAAGCCTCATGCGCAATAAGAAAAAGATTCATGAATGGCGAGCTGTTTTAAATAGCAAGACATGGGAATTGGAAGAGATTCAACAAGATGTTTTTCGGCCTTTATTACTAAGTTATCTTGATTTGTCTCCAGCAATCAAACGTTGCCTTTTATATTGTGCTACATTCCCAAAAGATTTTGAATTTCAGAATGATATGTTGATTGAGTTGTGGATGTCGCAAGATTATTTATATATGGGAAGAAGACAAGAAAAGATAGCAATAGGTCAAAATTATTTTGATGACTTAGTAAGGCGGTCTTTTTTTCAAAATGTTCGTTTATGTGTTGAAGGAGTAATAGCTTGCCAAATTCATGATATTGTACATGACTTTTTGCAATATCTAACCAAGAATGAATCTTTGATTTTGGATTTTGAGTTAGATGGCAGTGATAGAATGAAGGTGCCGAATGATAAACTCCGTCATTTGACTTTAGTTAATGCAACTGAGAGTGATTCTTTGGTATCTTTTTTACTCACTTGTAGAAATTTGCGTAGCTTCACAATTATGGGTCCATCCAGCTATAATTTCATTACTATCTCAATGTTTGAGTTGATAGAACAGTTGAAATGTCTTAGGGCATTAAACTTGTGTAATTCCGATATAAACGATACTGGTGTTGTAAAAATTCCCAAAATTATTGGTGGATTGATACATTTGAGGTATCTTGATTTGTCTGGTAACAGACAGTTGGTGGAATTATCAGGCTCCATAAGTAGCTTATACAACCTGCAAACCTTGCGACTTGCTTACTGTTATTCTCTCGAAAAAATAGATGTGGGAAGCCTGATTAACTTGATGCATCTTCATGTTCAAGACTGTGGTAGGCTAAATTTAATTAAAGGGATTGAGAAATTAACAGAATTGCAAACGCTAGATGAATTTAATATTGGAGTTGGTGATGAACAAAACAAGTTGGAAGATCTGAAAGACTTGAACCAGCTTCAACAGGATCTTAGTATTTGTATTTGCGGACCGCTAGATGCAAATATGGCGGAGAAAGCAAATATACGGAATAAGGCTCACCTCACACATTTGGCCCTGACGTACAGACGGTACAGTGAGAATAATGAAGGAGATGATAGAGAAATTATGAATGCCTTAGAGCCGCATCCAGATTTGGAAGGTTTACAAATCTTTAGTTATGGAGGCGTCACCTTCTCCCATTGGTTGTTGTCTTTGCAGAGCTTGACAAGACTCGACCTTTCTTCTTGCAATAGATGTGAGTTTTTGCCTCCTTTAGGGAAACTGCCTGCCCTTGAATCATTACATATTGAATGCAGTAAGCAAGTGAAAAGGGTAGGAGTTGAGTTACTGGGAATAGAAACAACAACTAGGCAAACCTCGTCGACATTCAACTCATTCCAGAAGCTGAAACAACTTTCCTTCTTCAGCATGACGTTATGGGAAGAGTGGCAAGGAGTGGACGGCTGGAGTAGGGAAGAGGAGAATTCTGAGACTAATAATATTACAATCATGCCATGCCTCTCTAAGTTGAGAATTACTTGCTGCAAGAAGCTAAAAGCACTGCCGGACTTCCTGTGGAAGACACCACTTCAGGAATTGCACATCAAACAATCTCCAATTCTCGAAAACCTTTACAGAGAAGGAACGGGTGAACAGTGGGCCAAGATTTCTCACATCTCAAGCATCAAGATAACAGCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

955

Amino Acids

109.09

Weight (kDa)

5.79

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 96 1e-22 Rx N-terminal domain
NB-ARC PF00931 187 - 353 1.9e-33 NB-ARC domain
WHD_DRP PF23559 442 - 510 6.1e-19 Disease resistance protein Winged helix domain
LRR_14 PF23598 563 - 867 3.6e-24 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 705 - 825 1.3e-30 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000018)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_3g02290 FvH4_5g32191 FvH4_5g32210 FvH4_5g32230 FvH4_5g32420 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g32430 FvH4_5g33110 FvH4_5g33290 FvH4_6g01191 FvH4_6g28061 FvH4_6g29480 FvH4_6g29480 FvH4_6g30331 FvH4_6g32101 FvH4_6g32110 FvH4_6g51140 FvH4_6g51141 FvH4_6g52150 FvH4_7g21941 FvH4_7g22003 FvH4_7g22004 FvH4_7g22140 FvH4_7g22591 FvH4_7g22741 FvH4_7g23500 FvH4_7g23840 FvH4_7g23850 FvH4_7g26370
malus_domestica MD03G1045400.v1.1 MD03G1061200.v1.1 MD03G1061300.v1.1 MD03G1067300.v1.1 MD03G1067700.v1.1 MD03G1067800.v1.1 MD08G1042700.v1.1 MD08G1043000.v1.1 MD08G1045100.v1.1 MD08G1045800.v1.1 MD08G1045900.v1.1 MD08G1047100.v1.1 MD08G1072200.v1.1 MD08G1093300.v1.1 MD08G1094100.v1.1 MD08G1094300.v1.1 MD08G1094800.v1.1 MD08G1096800.v1.1 MD08G1097100.v1.1 MD08G1098600.v1.1 MD08G1099900.v1.1 MD08G1104200.v1.1 MD08G1104300.v1.1 MD11G1063800.v1.1 MD11G1063900.v1.1 MD11G1064300.v1.1 MD11G1064900.v1.1 MD15G1035200.v1.1 MD15G1035600.v1.1 MD15G1042600.v1.1 MD15G1046900.v1.1 MD15G1054600.v1.1 MD15G1054700.v1.1 MD15G1054800.v1.1
prunus_persica Prupe.1G524900_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528800_v2.0.a1 Prupe.1G528900_v2.0.a1 Prupe.1G529000_v2.0.a1 Prupe.1G538500_v2.0.a1 Prupe.1G544800_v2.0.a1 Prupe.1G545000_v2.0.a1 Prupe.1G545100_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545200_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.1G545300_v2.0.a1 Prupe.3G085000_v2.0.a1 Prupe.3G086700_v2.0.a1 Prupe.3G086800_v2.0.a1 Prupe.3G087900_v2.0.a1 Prupe.3G088000_v2.0.a1 Prupe.3G089000_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089100_v2.0.a1 Prupe.3G089200_v2.0.a1 Prupe.3G089400_v2.0.a1 Prupe.3G092700_v2.0.a1 Prupe.3G093000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284000_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284300_v2.0.a1 Prupe.4G284800_v2.0.a1 Prupe.4G285100_v2.0.a1 Prupe.4G285500_v2.0.a1 Prupe.4G285500_v2.0.a1
pyrus_communis pycom03g03500 pycom03g03510 pycom03g03520 pycom03g03530 pycom03g03550 pycom03g05410 pycom08g03690 pycom08g03950 pycom08g07590 pycom08g07680 pycom08g08030 pycom08g08120 pycom11g05380 pycom11g05400 pycom11g05420 pycom11g05440 pycom11g05450 pycom11g05460 pycom15g03240 pycom15g03290 pycom15g04720 pycom15g05170 pycom17g13290
rosa_chinensis RchiOBHm_Chr1g0340771 RchiOBHm_Chr1g0361911 RchiOBHm_Chr1g0366291 RchiOBHm_Chr1g0367821 RchiOBHm_Chr1g0367831 RchiOBHm_Chr1g0368631 RchiOBHm_Chr1g0369581 RchiOBHm_Chr1g0369611 RchiOBHm_Chr2g0120611 RchiOBHm_Chr2g0130951 RchiOBHm_Chr2g0131561 RchiOBHm_Chr2g0131851 RchiOBHm_Chr2g0131891 RchiOBHm_Chr2g0131931 RchiOBHm_Chr2g0134391 RchiOBHm_Chr2g0134631 RchiOBHm_Chr2g0134641 RchiOBHm_Chr2g0134661 RchiOBHm_Chr2g0134991 RchiOBHm_Chr2g0135001 RchiOBHm_Chr2g0135021 RchiOBHm_Chr2g0135051 RchiOBHm_Chr2g0135151 RchiOBHm_Chr2g0135171 RchiOBHm_Chr2g0139781 RchiOBHm_Chr2g0139801 RchiOBHm_Chr2g0139871 RchiOBHm_Chr2g0139881 RchiOBHm_Chr2g0164331 RchiOBHm_Chr2g0164491 RchiOBHm_Chr2g0164561 RchiOBHm_Chr3g0490871 RchiOBHm_Chr3g0492181 RchiOBHm_Chr4g0389051 RchiOBHm_Chr5g0003421 RchiOBHm_Chr5g0003441 RchiOBHm_Chr5g0008141 RchiOBHm_Chr5g0008151 RchiOBHm_Chr5g0048721 RchiOBHm_Chr5g0048731 RchiOBHm_Chr6g0267871 RchiOBHm_Chr6g0275061 RchiOBHm_Chr7g0224961 RchiOBHm_Chr7g0225001 RchiOBHm_Chr7g0225011 RchiOBHm_Chr7g0225081 RchiOBHm_Chr7g0225131 RchiOBHm_Chr7g0227231 RchiOBHm_Chr7g0228261 RchiOBHm_Chr7g0228341 RchiOBHm_Chr7g0228901 RchiOBHm_Chr7g0229271 RchiOBHm_Chr7g0229291 RchiOBHm_Chr7g0229341 RchiOBHm_Chr7g0229361 RchiOBHm_Chr7g0229431 RchiOBHm_Chr7g0229471 RchiOBHm_Chr7g0229521 RchiOBHm_Chr7g0229571 RchiOBHm_Chr7g0229681 RchiOBHm_Chr7g0229691 RchiOBHm_Chr7g0229741 RchiOBHm_Chr7g0229781 RchiOBHm_Chr7g0229831 RchiOBHm_Chr7g0229921 RchiOBHm_Chr7g0229931 RchiOBHm_Chr7g0229941 RchiOBHm_Chr7g0230071 RchiOBHm_Chr7g0230171 RchiOBHm_Chr7g0230181 RchiOBHm_Chr7g0230391 RchiOBHm_Chr7g0230401 RchiOBHm_Chr7g0231561 RchiOBHm_Chr7g0231671 RchiOBHm_Chr7g0231701 RchiOBHm_Chr7g0231731 RchiOBHm_Chr7g0231761 RchiOBHm_Chr7g0231851 RchiOBHm_Chr7g0231871 RchiOBHm_Chr7g0231911 RchiOBHm_Chr7g0231931 RchiOBHm_Chr7g0231961 RchiOBHm_Chr7g0232031 RchiOBHm_Chr7g0232041
rosa_laevigata RLG00000001537 RLG00000018772 RLG00000019159 RLG00000019199 RLG00000019214 RLG00000019218 RLG00000019389 RLG00000019407 RLG00000019418 RLG00000019437 RLG00000019438 RLG00000019445 RLG00000019833 RLG00000019836 RLG00000021454 RLG00000021463 RLG00000021464 RLG00000021465 RLG00000022820
rosa_multiflora Rmu_co8062456.1_g000001 Rmu_co8347363.1_g000001 Rmu_co8390161.1_g000001 Rmu_co8431733.1_g000001 Rmu_co8435525.1_g000001 Rmu_co8458367.1_g000001 Rmu_sc0000100.1_g000006 Rmu_sc0000150.1_g000001 Rmu_sc0000271.1_g000045 Rmu_sc0000322.1_g000040 Rmu_sc0000447.1_g000007 Rmu_sc0000545.1_g000006 Rmu_sc0000545.1_g000017 Rmu_sc0000584.1_g000003 Rmu_sc0000584.1_g000007 Rmu_sc0000693.1_g000035 Rmu_sc0000693.1_g000037 Rmu_sc0000693.1_g000052 Rmu_sc0000693.1_g000057 Rmu_sc0000693.1_g000060 Rmu_sc0000693.1_g000073 Rmu_sc0000718.1_g000040 Rmu_sc0000718.1_g000041 Rmu_sc0000721.1_g000002 Rmu_sc0000851.1_g000006 Rmu_sc0000851.1_g000008 Rmu_sc0001154.1_g000007 Rmu_sc0001154.1_g000012 Rmu_sc0001154.1_g000021 Rmu_sc0001211.1_g000133 Rmu_sc0001336.1_g000041 Rmu_sc0001352.1_g000003 Rmu_sc0001352.1_g000005 Rmu_sc0001352.1_g000009 Rmu_sc0001352.1_g000026 Rmu_sc0001352.1_g000030 Rmu_sc0001385.1_g000011 Rmu_sc0001621.1_g000006 Rmu_sc0001621.1_g000015 Rmu_sc0001621.1_g000016 Rmu_sc0001621.1_g000017 Rmu_sc0001626.1_g000007 Rmu_sc0001626.1_g000009 Rmu_sc0001626.1_g000016 Rmu_sc0001791.1_g000004 Rmu_sc0001791.1_g000006 Rmu_sc0001918.1_g000009 Rmu_sc0001918.1_g000010 Rmu_sc0001918.1_g000012 Rmu_sc0002541.1_g000029 Rmu_sc0002589.1_g000003 Rmu_sc0002589.1_g000004 Rmu_sc0002589.1_g000045 Rmu_sc0002589.1_g000046 Rmu_sc0002666.1_g000004 Rmu_sc0002666.1_g000005 Rmu_sc0002738.1_g000004 Rmu_sc0002792.1_g000002 Rmu_sc0002822.1_g000032 Rmu_sc0002874.1_g000003 Rmu_sc0002874.1_g000004 Rmu_sc0002938.1_g000021 Rmu_sc0003063.1_g000007 Rmu_sc0003063.1_g000013 Rmu_sc0003153.1_g000007 Rmu_sc0003153.1_g000008 Rmu_sc0003327.1_g000001 Rmu_sc0003327.1_g000002 Rmu_sc0003629.1_g000043 Rmu_sc0003646.1_g000001 Rmu_sc0003731.1_g000002 Rmu_sc0003731.1_g000009 Rmu_sc0003731.1_g000010 Rmu_sc0003731.1_g000011 Rmu_sc0003736.1_g000008 Rmu_sc0003786.1_g000001 Rmu_sc0004110.1_g000001 Rmu_sc0004110.1_g000002 Rmu_sc0004216.1_g000003 Rmu_sc0004618.1_g000027 Rmu_sc0004618.1_g000032 Rmu_sc0004842.1_g000008 Rmu_sc0004842.1_g000018 Rmu_sc0004929.1_g000006 Rmu_sc0005400.1_g000012 Rmu_sc0005400.1_g000013 Rmu_sc0006671.1_g000002 Rmu_sc0006926.1_g000019 Rmu_sc0006926.1_g000020 Rmu_sc0007103.1_g000016 Rmu_sc0007108.1_g000007 Rmu_sc0007154.1_g000012 Rmu_sc0008351.1_g000010 Rmu_sc0008778.1_g000001 Rmu_sc0008991.1_g000012 Rmu_sc0009787.1_g000017 Rmu_sc0009986.1_g000010 Rmu_sc0009986.1_g000012 Rmu_sc0010008.1_g000003 Rmu_sc0010008.1_g000004 Rmu_sc0010008.1_g000005 Rmu_sc0010898.1_g000001 Rmu_sc0011233.1_g000001 Rmu_sc0011454.1_g000002 Rmu_sc0011584.1_g000001 Rmu_sc0011584.1_g000002 Rmu_sc0011658.1_g000001 Rmu_sc0011851.1_g000001 Rmu_sc0011851.1_g000002 Rmu_sc0013445.1_g000001 Rmu_sc0014443.1_g000001 Rmu_sc0014759.1_g000001 Rmu_sc0014759.1_g000002 Rmu_sc0016484.1_g000002 Rmu_sc0016837.1_g000004 Rmu_sc0019504.1_g000001 Rmu_sc0020353.1_g000004 Rmu_sc0021533.1_g000001 Rmu_sc0021595.1_g000002 Rmu_sc0029807.1_g000001 Rmu_sc0030896.1_g000001 Rmu_sc0032943.1_g000001 Rmu_sc0037222.1_g000001 Rmu_ssc0000124.1_g000009 Rmu_ssc0000395.1_g000034 Rmu_ssc0000395.1_g000035 Rmu_ssc0000438.1_g000027 Rmu_ssc0000438.1_g000028 Rmu_ssc0000438.1_g000034 Rmu_ssc0000438.1_g000035
rosa_roxburghii Rroxscaffold_1G00028180 Rroxscaffold_1G00072590 Rroxscaffold_2G00097700 Rroxscaffold_2G00105200 Rroxscaffold_2G00109430 Rroxscaffold_2G00109520 Rroxscaffold_2G00109550 Rroxscaffold_2G00109580 Rroxscaffold_2G00109850 Rroxscaffold_2G00109860 Rroxscaffold_2G00109920 Rroxscaffold_2G00109940 Rroxscaffold_2G00110280 Rroxscaffold_2G00112580 Rroxscaffold_2G00112780 Rroxscaffold_2G00112800 Rroxscaffold_3G00228890 Rroxscaffold_3G00228930 Rroxscaffold_3G00230320 Rroxscaffold_3G00231240 Rroxscaffold_3G00232250 Rroxscaffold_4G00287510 Rroxscaffold_4G00289180 Rroxscaffold_4G00290020 Rroxscaffold_4G00290270 Rroxscaffold_4G00311390 Rroxscaffold_4G00315230 Rroxscaffold_4G00321660 Rroxscaffold_7G00193710
rosa_rugosa Rorug01G0292300 Rorug01G0328500 Rorug01G0337100 Rorug01G0343300 Rorug01G0343300 Rorug01G0343300 Rorug01G0351600 Rorug01G0370300 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0232900 Rorug02G0265100 Rorug02G0265400 Rorug02G0265600 Rorug02G0265800 Rorug02G0267000.1 Rorug02G0267700 Rorug02G0268300 Rorug02G0269000 Rorug02G0269600 Rorug02G0292000 Rorug02G0292900 Rorug02G0294100 Rorug02G0297700 Rorug02G0297800.1 Rorug02G0298100.1 Rorug02G0300600 Rorug02G0300600 Rorug02G0300600 Rorug02G0300700 Rorug02G0307200 Rorug02G0316700 Rorug02G0318800 Rorug02G0319500 Rorug02G0319600 Rorug02G0321800 Rorug02G0321900 Rorug02G0322000 Rorug02G0322200 Rorug02G0322300 Rorug02G0322500 Rorug02G0323700 Rorug02G0359900 Rorug02G0508000 Rorug02G0508500 Rorug02G0508800 Rorug03G0247000 Rorug03G0247100 Rorug04G0403100 Rorug04G0403300 Rorug04G0421400 Rorug04G0421500 Rorug04G0433400 Rorug04G0433400 Rorug04G0459100 Rorug04G0459300 Rorug05G0360200 Rorug06G0034600 Rorug06G0060600 Rorug06G0087200 Rorug07G0227300 Rorug07G0227500 Rorug07G0241100 Rorug07G0247500 Rorug07G0247600.1 Rorug07G0247700 Rorug07G0252800 Rorug07G0253300 Rorug07G0253700 Rorug07G0253800 Rorug07G0254000 Rorug07G0254200 Rorug07G0254200 Rorug07G0254200 Rorug07G0254700 Rorug07G0254700 Rorug07G0258300 Rorug07G0258500 Rorug07G0258700 Rorug07G0259100 Rorug07G0259500 Rorug07G0259600 Rorug07G0259800 Rorug07G0260400 Rorug07G0267900 Rorug07G0267900 Rorug07G0268000 Rorug07G0268000 Rorug07G0268400 Rorug07G0268400 Rorug07G0268600 Rorug07G0271600 Rorug07G0271600
rosa_samantha Rh2AG409800 Rh2AG410200 Rh2BG375200 Rh2BG420300 Rh2CG352800 Rh2CG396300 Rh2DG392300 Rh2DG429600 Rh2DG429900 Rh7CG443100 Rh7DG415200
rosa_wichuraiana Rw0G001880 Rw0G004020 Rw0G013400 Rw0G018600 Rw0G022140 Rw1G029850 Rw1G030630 Rw1G031690 Rw2G027580 Rw2G028510 Rw2G028630 Rw2G028660 Rw2G028700 Rw2G028730 Rw2G030070 Rw2G030230 Rw2G030460 Rw2G030480 Rw2G030510 Rw2G030520 Rw2G030540 Rw2G033370 Rw2G033390 Rw2G033580 Rw2G033600 Rw2G033610 Rw2G047700 Rw2G047790 Rw2G047880 Rw5G002800 Rw5G005880 Rw6G013590 Rw7G033310 Rw7G033370 Rw7G033640 Rw7G033690 Rw7G033950 Rw7G033990 Rw7G034000 Rw7G034030 Rw7G034040 Rw7G034160 Rw7G034890 Rw7G034920 Rw7G034990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1172
Acc36I ACCTGC 1 cut(s) 1935
AccB1I GGYRCC 1 cut(s) 1600
AccB7I CCANNNNNTGG 1 cut(s) 226
AccI GTMKAC 1 cut(s) 2546
AccII CGCG 1 cut(s) 34
AciI CCGC 5 cut(s) 1453, 2169, 2174, 2192, 2306
AclI AACGTT 1 cut(s) 1300
AclWI GGATC 5 cut(s) 55, 257, 728, 1000, 2157
AcsI RAATTY 7 cut(s) 1340, 1506, 1684, 1824, 2029, 2078, 2647
AcuI CTGAAG 5 cut(s) 346, 618, 1034, 2572, 2738
AcyI GRCGYC 1 cut(s) 2349
AfaI GTAC 6 cut(s) 298, 595, 943, 1521, 2246, 2255
AfiI CCNNNNNNNGG 4 cut(s) 226, 632, 1015, 2438
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 2 cut(s) 2070, 2102
AloI GAACNNNNNNTCC 2 cut(s) 594, 626
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 3 cut(s) 733, 1290, 2648
AlwI GGATC 5 cut(s) 55, 257, 728, 1000, 2157
AlwNI CAGNNNCTG 1 cut(s) 2569
AoxI GGCC 3 cut(s) 1256, 2235, 2823
ApeKI GCWGC 5 cut(s) 5, 8, 580, 1145, 2706
ApoI RAATTY 7 cut(s) 1340, 1506, 1684, 1824, 2029, 2078, 2647
AseI ATTAAT 3 cut(s) 828, 908, 1068
Asp700I GAANNNNTTC 1 cut(s) 1236
AspLEI GCGC 2 cut(s) 34, 1173
AspS9I GGNCC 4 cut(s) 1709, 2171, 2236, 2823
AsuHPI GGTGA 7 cut(s) 106, 964, 1037, 2108, 2213, 2344, 2825
AsuII TTCGAA 1 cut(s) 404
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 2 cut(s) 1709, 2171
BaeI ACNNNNGTAYC 2 cut(s) 1800, 1833
BanI GGYRCC 1 cut(s) 1600
BanII GRGCYC 1 cut(s) 884
BbsI GAAGAC 2 cut(s) 1408, 2750
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 4 cut(s) 20, 567, 1132, 2693
BccI CCATC 4 cut(s) 166, 631, 1574, 1720
BceAI ACGGC 1 cut(s) 2641
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 3 cut(s) 733, 1290, 2648
BfaI CTAG 8 cut(s) 29, 255, 779, 960, 1142, 2072, 2177, 2532
BfmI CTRYAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 1935
BglII AGATCT 1 cut(s) 2119
BisI GCNGC 6 cut(s) 6, 9, 581, 1146, 2306, 2707
BlsI GCNGC 6 cut(s) 7, 10, 582, 1147, 2307, 2708
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 2 cut(s) 1709, 2171
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 4 cut(s) 1709, 2171, 2236, 2823
BmiI GGNNCC 6 cut(s) 489, 612, 881, 1602, 1710, 1906
BmrFI CCNGG 1 cut(s) 368
BmrI ACTGGG 1 cut(s) 2522
BmsI GCATC 7 cut(s) 255, 277, 1986, 2008, 2170, 2317, 2856
BmtI GCTAGC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 2522
BpiI GAAGAC 2 cut(s) 1408, 2750
BpmI CTGGAG 3 cut(s) 167, 1272, 2650
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 2827
Bsa29I ATCGAT 1 cut(s) 836
BsaBI GATNNNNATC 1 cut(s) 752
BsaHI GRCGYC 1 cut(s) 2349
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 632, 1015, 2438
Bse1I ACTGG 3 cut(s) 18, 1816, 2517
Bse3DI GCAATG 1 cut(s) 1135
Bse8I GATNNNNATC 1 cut(s) 752
BseBI CCWGG 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 836
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 6 cut(s) 235, 621, 642, 1377, 1712, 2308
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 4 cut(s) 226, 632, 1015, 2438
BseMI GCAATG 1 cut(s) 1135
BseMII CTCAG 4 cut(s) 449, 744, 1635, 2643
BseNI ACTGG 3 cut(s) 18, 1816, 2517
BseRI GAGGAG 1 cut(s) 2657
BseXI GCAGC 4 cut(s) 20, 567, 1132, 2693
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 3 cut(s) 1258, 2237, 2825
BshNI GGYRCC 1 cut(s) 1600
BshVI ATCGAT 1 cut(s) 836
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 2729
BslI CCNNNNNNNGG 4 cut(s) 226, 632, 1015, 2438
BsmAI GTCTC 3 cut(s) 733, 1290, 2648
BsmI GAATGC 2 cut(s) 2299, 2480
BsnI GGCC 3 cut(s) 1258, 2237, 2825
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 240, 884
Bsp1407I TGTACA 1 cut(s) 1519
Bsp143I GATC 7 cut(s) 60, 249, 690, 733, 1005, 2119, 2149
BspACI CCGC 5 cut(s) 1453, 2169, 2174, 2192, 2306
BspANI GGCC 3 cut(s) 1258, 2237, 2825
BspCNI CTCAG 4 cut(s) 448, 743, 1636, 2644
BspDI ATCGAT 1 cut(s) 836
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 2 cut(s) 1189, 1510
BspLI GGNNCC 6 cut(s) 489, 612, 881, 1602, 1710, 1906
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 1935
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 5 cut(s) 55, 257, 728, 1000, 2157
BspT104I TTCGAA 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 1600
BsrDI GCAATG 1 cut(s) 1135
BsrGI TGTACA 1 cut(s) 1519
BsrI ACTGG 3 cut(s) 18, 1816, 2517
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 7 cut(s) 60, 249, 690, 733, 1005, 2119, 2149
BssNI GRCGYC 1 cut(s) 2349
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 9 cut(s) 929, 946, 1761, 1887, 1952, 2018, 2253, 2258, 2820
Bst6I CTCTTC 5 cut(s) 528, 738, 1227, 2601, 2634
BstACI GRCGYC 1 cut(s) 2349
BstAPI GCANNNNNTGC 1 cut(s) 1936
BstAUI TGTACA 1 cut(s) 1519
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 6 cut(s) 30, 181, 578, 1200, 1501, 2451
BstEII GGTNACC 1 cut(s) 952
BstENI CCTNNNNNAGG 2 cut(s) 630, 2436
BstF5I GGATG 6 cut(s) 235, 621, 642, 1377, 1712, 2308
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 34, 1173
BstKTI GATC 7 cut(s) 63, 252, 693, 736, 1008, 2122, 2152
BstMAI GTCTC 3 cut(s) 733, 1290, 2648
BstMBI GATC 7 cut(s) 60, 249, 690, 733, 1005, 2119, 2149
BstMWI GCNNNNNNNGC 8 cut(s) 38, 137, 202, 1151, 1170, 1936, 2189, 2198
BstNI CCWGG 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 952
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 20, 567, 1132, 2693
BstV2I GAAGAC 2 cut(s) 1408, 2750
BstX2I RGATCY 4 cut(s) 60, 733, 2119, 2149
BstYI RGATCY 4 cut(s) 60, 733, 2119, 2149
Bsu15I ATCGAT 1 cut(s) 836
BsuRI GGCC 3 cut(s) 1258, 2237, 2825
BsuTUI ATCGAT 1 cut(s) 836
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 6 cut(s) 235, 621, 642, 1377, 1712, 2308
BtsI GCAGTG 2 cut(s) 1591, 2723
BtsIMutI CAGTG 5 cut(s) 11, 1591, 2263, 2723, 2825
BveI ACCTGC 1 cut(s) 1935
Cac8I GCNNGC 6 cut(s) 30, 181, 578, 1200, 1501, 2451
CaiI CAGNNNCTG 1 cut(s) 2569
CciI TCATGA 2 cut(s) 1189, 1510
CfoI GCGC 2 cut(s) 34, 1173
Cfr13I GGNCC 4 cut(s) 1709, 2171, 2236, 2823
ClaI ATCGAT 1 cut(s) 836
CpoI CGGWCCG 1 cut(s) 2171
CseI GACGC 2 cut(s) 161, 2338
Csp6I GTAC 6 cut(s) 297, 594, 942, 1520, 2245, 2254
CspI CGGWCCG 1 cut(s) 2171
CviQI GTAC 6 cut(s) 297, 594, 942, 1520, 2245, 2254
DpnI GATC 7 cut(s) 62, 251, 692, 735, 1007, 2121, 2151
DpnII GATC 7 cut(s) 60, 249, 690, 733, 1005, 2119, 2149
DraI TTTAAA 1 cut(s) 1209
Eam1104I CTCTTC 5 cut(s) 528, 738, 1227, 2601, 2634
EarI CTCTTC 5 cut(s) 528, 738, 1227, 2601, 2634
EciI GGCGGA 1 cut(s) 2207
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 884
Eco47I GGWCC 2 cut(s) 1709, 2171
Eco57I CTGAAG 5 cut(s) 346, 618, 1034, 2572, 2738
Eco91I GGTNACC 1 cut(s) 952
EcoNI CCTNNNNNAGG 2 cut(s) 630, 2436
EcoO65I GGTNACC 1 cut(s) 952
EcoRI GAATTC 1 cut(s) 2647
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 52
EcoT22I ATGCAT 2 cut(s) 270, 2001
EcoT38I GRGCYC 1 cut(s) 884
ErhI CCWWGG 1 cut(s) 52
FalI AAGNNNNNCTT 4 cut(s) 317, 349, 1441, 1473
FblI GTMKAC 1 cut(s) 2546
Fnu4HI GCNGC 6 cut(s) 6, 9, 581, 1146, 2306, 2707
FokI GGATG 6 cut(s) 242, 608, 649, 1384, 1699, 2295
FriOI GRGCYC 1 cut(s) 884
Fsp4HI GCNGC 6 cut(s) 6, 9, 581, 1146, 2306, 2707
FspBI CTAG 8 cut(s) 29, 255, 779, 960, 1142, 2072, 2177, 2532
FspI TGCGCA 1 cut(s) 1172
GlaI GCGC 2 cut(s) 33, 1172
GluI GCNGC 6 cut(s) 6, 9, 581, 1146, 2306, 2707
GsuI CTGGAG 3 cut(s) 167, 1272, 2650
HaeIII GGCC 3 cut(s) 1258, 2237, 2825
HapII CCGG 1 cut(s) 2729
HgaI GACGC 2 cut(s) 161, 2338
HhaI GCGC 2 cut(s) 34, 1173
Hin1I GRCGYC 1 cut(s) 2349
Hin6I GCGC 2 cut(s) 32, 1171
HinP1I GCGC 2 cut(s) 32, 1171
HincII GTYRAC 2 cut(s) 667, 2547
HindII GTYRAC 2 cut(s) 667, 2547
HinfI GANTC 6 cut(s) 1186, 1237, 1553, 1652, 2394, 2459
HpaII CCGG 1 cut(s) 2729
HphI GGTGA 7 cut(s) 106, 964, 1037, 2108, 2213, 2344, 2825
Hpy166II GTNNAC 5 cut(s) 667, 2327, 2547, 2623, 2816
Hpy188I TCNGA 8 cut(s) 264, 438, 733, 1014, 1347, 1798, 2124, 2653
Hpy8I GTNNAC 5 cut(s) 667, 2327, 2547, 2623, 2816
Hpy99I CGWCG 1 cut(s) 2548
HpyCH4III ACNGT 9 cut(s) 929, 946, 1761, 1887, 1952, 2018, 2253, 2258, 2820
HpyCH4IV ACGT 5 cut(s) 234, 505, 1300, 2243, 2597
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 137, 202, 1151, 1170, 1936, 2189, 2198
HpySE526I ACGT 5 cut(s) 234, 505, 1300, 2243, 2597
Hsp92I GRCGYC 1 cut(s) 2349
HspAI GCGC 2 cut(s) 32, 1171
Kzo9I GATC 7 cut(s) 60, 249, 690, 733, 1005, 2119, 2149
LmnI GCTCC 2 cut(s) 879, 1910
Lsp1109I GCAGC 4 cut(s) 20, 567, 1132, 2693
LweI GCATC 7 cut(s) 255, 277, 1986, 2008, 2170, 2317, 2856
MaeI CTAG 8 cut(s) 29, 255, 779, 960, 1142, 2072, 2177, 2532
MaeII ACGT 5 cut(s) 234, 505, 1300, 2243, 2597
MaeIII GTNAC 6 cut(s) 389, 923, 952, 1877, 2350, 2508
MalI GATC 7 cut(s) 62, 251, 692, 735, 1007, 2121, 2151
MboI GATC 7 cut(s) 60, 249, 690, 733, 1005, 2119, 2149
MfeI CAATTG 1 cut(s) 1001
MflI RGATCY 4 cut(s) 60, 733, 2119, 2149
MhlI GDGCHC 2 cut(s) 240, 884
MlyI GAGTC 1 cut(s) 2388
MmeI TCCRAC 3 cut(s) 88, 786, 2094
Mph1103I ATGCAT 2 cut(s) 270, 2001
MroXI GAANNNNTTC 1 cut(s) 1236
MslI CAYNNNNRTG 2 cut(s) 1703, 2004
MspI CCGG 1 cut(s) 2729
MspR9I CCNGG 1 cut(s) 368
MunI CAATTG 1 cut(s) 1001
Mva1269I GAATGC 2 cut(s) 2299, 2480
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 8 cut(s) 38, 137, 202, 1151, 1170, 1936, 2189, 2198
NdeII GATC 7 cut(s) 60, 249, 690, 733, 1005, 2119, 2149
NheI GCTAGC 1 cut(s) 28
NlaIV GGNNCC 6 cut(s) 489, 612, 881, 1602, 1710, 1906
NmuCI GTSAC 3 cut(s) 389, 952, 2350
NsbI TGCGCA 1 cut(s) 1172
NsiI ATGCAT 2 cut(s) 270, 2001
NspV TTCGAA 1 cut(s) 404
PacI TTAATTAA 2 cut(s) 912, 2037
PagI TCATGA 2 cut(s) 1189, 1510
PctI GAATGC 2 cut(s) 2299, 2480
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 5 cut(s) 1186, 1237, 1553, 1652, 2459
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 6 cut(s) 7, 10, 582, 1147, 2307, 2708
PleI GAGTC 1 cut(s) 2388
PpsI GAGTC 1 cut(s) 2388
PshBI ATTAAT 3 cut(s) 828, 908, 1068
Psp1406I AACGTT 1 cut(s) 1300
Psp6I CCWGG 1 cut(s) 366
PspEI GGTNACC 1 cut(s) 952
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 6 cut(s) 489, 612, 881, 1602, 1710, 1906
PspPI GGNCC 4 cut(s) 1709, 2171, 2236, 2823
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 2569
PsuI RGATCY 4 cut(s) 60, 733, 2119, 2149
RsaI GTAC 6 cut(s) 298, 595, 943, 1521, 2246, 2255
RsaNI GTAC 6 cut(s) 297, 594, 942, 1520, 2245, 2254
RseI CAYNNNNRTG 2 cut(s) 1703, 2004
Rsr2I CGGWCCG 1 cut(s) 2171
RsrII CGGWCCG 1 cut(s) 2171
SalI GTCGAC 1 cut(s) 2545
SatI GCNGC 6 cut(s) 6, 9, 581, 1146, 2306, 2707
Sau3AI GATC 7 cut(s) 60, 249, 690, 733, 1005, 2119, 2149
Sau96I GGNCC 4 cut(s) 1709, 2171, 2236, 2823
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 1 cut(s) 2388
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 2 cut(s) 240, 884
SfaNI GCATC 7 cut(s) 255, 277, 1986, 2008, 2170, 2317, 2856
SfcI CTRYAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 2 cut(s) 1709, 2171
SmiMI CAYNNNNRTG 2 cut(s) 1703, 2004
SmlI CTYRAG 1 cut(s) 2842
SmoI CTYRAG 1 cut(s) 2842
SsiI CCGC 5 cut(s) 1453, 2169, 2174, 2192, 2306
SspI AATATT 2 cut(s) 2086, 2665
SspMI CTAG 8 cut(s) 29, 255, 779, 960, 1142, 2072, 2177, 2532
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 9 cut(s) 929, 946, 1761, 1887, 1952, 2018, 2253, 2258, 2820
TaiI ACGT 5 cut(s) 237, 508, 1303, 2246, 2600
TaqI TCGA 8 cut(s) 240, 404, 547, 836, 1962, 2397, 2546, 2787
TatI WGTACW 3 cut(s) 593, 941, 1519
TauI GCSGC 1 cut(s) 2308
TfiI GAWTC 5 cut(s) 1186, 1237, 1553, 1652, 2459
TscAI CASTG 5 cut(s) 18, 1591, 2263, 2730, 2825
TseFI GTSAC 3 cut(s) 389, 952, 2350
TseI GCWGC 5 cut(s) 5, 8, 580, 1145, 2706
Tsp45I GTSAC 3 cut(s) 389, 952, 2350
TspGWI ACGGA 2 cut(s) 1607, 2224
TspRI CASTG 5 cut(s) 18, 1591, 2263, 2730, 2825
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 1709, 2171
VspI ATTAAT 3 cut(s) 828, 908, 1068
XagI CCTNNNNNAGG 2 cut(s) 630, 2436
XapI RAATTY 7 cut(s) 1340, 1506, 1684, 1824, 2029, 2078, 2647
XbaI TCTAGA 1 cut(s) 778
XmiI GTMKAC 1 cut(s) 2546
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 8 cut(s) 29, 255, 779, 960, 1142, 2072, 2177, 2532
ZrmI AGTACT 1 cut(s) 595
Zsp2I ATGCAT 2 cut(s) 270, 2001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.